Mock Version: 1.4.21 Mock Version: 1.4.21 Mock Version: 1.4.21 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target armv7hl --nodeps /builddir/build/SPECS/gromacs.spec'], chrootPath='/var/lib/mock/f31-build-19598543-1388490/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=201600uid=1000gid=425user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target armv7hl --nodeps /builddir/build/SPECS/gromacs.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False Building target platforms: armv7hl Building for target armv7hl setting SOURCE_DATE_EPOCH=1582848000 Wrote: /builddir/build/SRPMS/gromacs-2019.6-1.fc31.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target armv7hl --nodeps /builddir/build/SPECS/gromacs.spec'], chrootPath='/var/lib/mock/f31-build-19598543-1388490/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=201600uid=1000gid=425user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target armv7hl --nodeps /builddir/build/SPECS/gromacs.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False Building target platforms: armv7hl Building for target armv7hl setting SOURCE_DATE_EPOCH=1582848000 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.Gjh0qt + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf gromacs-2019.6 + /usr/bin/gzip -dc /builddir/build/SOURCES/gromacs-2019.6.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd gromacs-2019.6 + /usr/bin/gzip -dc /builddir/build/SOURCES/regressiontests-2019.6.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + echo 'Patch #0 (gromacs-dssp-path.patch):' + /usr/bin/patch --no-backup-if-mismatch -p1 --fuzz=0 Patch #0 (gromacs-dssp-path.patch): patching file src/gromacs/gmxana/gmx_do_dssp.cpp Hunk #1 succeeded at 501 (offset 56 lines). Hunk #2 succeeded at 640 (offset 50 lines). Patch #1 (gromacs-issue-2366.patch): + echo 'Patch #1 (gromacs-issue-2366.patch):' + /usr/bin/patch --no-backup-if-mismatch -p1 --fuzz=0 patching file src/gromacs/hardware/tests/hardwaretopology.cpp Hunk #1 succeeded at 195 (offset 10 lines). + install -Dpm644 /builddir/build/SOURCES/manual-2019.6.pdf ./serial/docs/manual/gromacs.pdf + rm -r src/external/fftpack src/external/tng_io src/external/lmfit + sed -i 's/set(_timeout [0-9]*)/set(_timeout 900)/' src/testutils/TestMacros.cmake + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.HIAeBr + umask 022 + cd /builddir/build/BUILD + cd gromacs-2019.6 + . /etc/profile.d/modules.sh ++ . /etc/profile.d/00-modulepath.sh +++ '[' -z /etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ']' +++ : ++ '[' -z '' ']' ++ '[' -z /usr/share/modulefiles ']' ++ PS_CMD=/usr/bin/ps ++ '[' '!' -x /usr/bin/ps ']' ++ EXPR_CMD=/usr/bin/expr ++ '[' '!' -x /usr/bin/expr ']' ++ BASENAME_CMD=/usr/bin/basename ++ '[' '!' -x /usr/bin/basename ']' +++ /usr/bin/ps -p 29607 -ocomm= ++ my_shell=sh +++ /usr/bin/expr sh : '-*\(.*\)' ++ my_shell=sh +++ /usr/bin/basename sh ++ my_shell=sh ++ '[' -f /usr/share/lmod/lmod/init/sh ']' ++ . /usr/share/lmod/lmod/init/sh +++ LMOD_ROOT=/usr/share/lmod +++ LMOD_PKG=/usr/share/lmod/lmod +++ LMOD_DIR=/usr/share/lmod/lmod/libexec/ +++ LMOD_CMD=/usr/share/lmod/lmod/libexec/lmod +++ MODULESHOME=/usr/share/lmod/lmod +++ export LMOD_CMD +++ export LMOD_PKG +++ export LMOD_DIR +++ export MODULESHOME +++ export LMOD_DIR ++ unset my_shell PS_CMD EXPR_CMD BASENAME_CMD MODULEPATH_INIT + for p in '' _d + for mpi in '' mpich openmpi + test -n '' + mkdir -p serial ~/build/BUILD/gromacs-2019.6/serial ~/build/BUILD/gromacs-2019.6 + pushd serial + test -z '' + cp -al ../regressiontests-2019.6 tests/ + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -I/usr/lib/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -I/usr/lib/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS ++ test -n '' ++ echo -DGMX_X11=ON ++ test -n '' ++ echo + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_TESTING:BOOL=ON -DCMAKE_SKIP_RPATH:BOOL=ON -DCMAKE_SKIP_BUILD_RPATH:BOOL=ON -DGMX_BLAS_USER=openblas -DGMX_BUILD_UNITTESTS:BOOL=ON -DGMX_EXTERNAL_LMFIT:BOOL=ON -DGMX_USE_LMFIT=external -DGMX_EXTERNAL_TNG:BOOL=ON -DGMX_EXTERNAL_TINYXML2:BOOL=OFF -DGMX_LAPACK_USER=openblas -DGMX_USE_RDTSCP=OFF -DGMX_SIMD=None ' ' -DGMX_X11=ON .. -- The C compiler identification is GNU 9.2.1 -- The CXX compiler identification is GNU 9.2.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Performing Test CXXFLAG_STD_CXX0X -- Performing Test CXXFLAG_STD_CXX0X - Success -- Performing Test CXX11_SUPPORTED -- Performing Test CXX11_SUPPORTED - Success -- Performing Test CXX11_STDLIB_PRESENT -- Performing Test CXX11_STDLIB_PRESENT - Success -- Looking for NVIDIA GPUs present in the system -- Could not detect NVIDIA GPUs -- No compatible CUDA toolkit found (v5.0+), disabling native GPU acceleration -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file regex.h -- Looking for include file regex.h - found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Looking for fedisableexcept in m -- Looking for fedisableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - not found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - not found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - not supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Check if the system is big endian -- Searching 16 bit integer -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- hwloc version: -- Found Hwloc: /usr/lib/libhwloc.so (found suitable version "2.0.4", minimum required is "1.5") -- Found X11: /usr/include -- Looking for XOpenDisplay in /usr/lib/libX11.so -- Looking for XOpenDisplay in /usr/lib/libX11.so - found -- Looking for gethostbyname -- Looking for gethostbyname - found -- Looking for connect -- Looking for connect - found -- Looking for remove -- Looking for remove - found -- Looking for shmat -- Looking for shmat - found -- Looking for C++ include pthread.h -- Looking for C++ include pthread.h - found -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Detected build CPU vendor - ARM -- Detected build CPU brand - ARMv7 Processor rev 2 (v7l) -- Detected build CPU family - 7 -- Detected build CPU model - 3 -- Detected build CPU stepping - 2 -- Detected build CPU features - neon -- Disabling RDTSCP support -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present with _FILE_OFFSET_BITS=64 -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Looking for C++ include regex -- Looking for C++ include regex - found -- Checking for system XDR support -- Checking for system XDR support - not present -- SIMD instructions disabled -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- Checking for module 'fftw3f' -- Found fftw3f, version 3.3.8 -- Looking for fftwf_plan_many_dft in /usr/lib/libfftw3f.so -- Looking for fftwf_plan_many_dft in /usr/lib/libfftw3f.so - found -- Looking for fftwf_plan_many_dft_r2c in /usr/lib/libfftw3f.so -- Looking for fftwf_plan_many_dft_r2c in /usr/lib/libfftw3f.so - found -- Looking for fftwf_plan_many_dft_c2r in /usr/lib/libfftw3f.so -- Looking for fftwf_plan_many_dft_c2r in /usr/lib/libfftw3f.so - found -- Looking for fftwf_have_simd_sse in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_sse in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_sse in /usr/lib/libfftw3f.so -- Looking for fftwf_have_sse in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_sse2 in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_sse2 in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_sse2 in /usr/lib/libfftw3f.so -- Looking for fftwf_have_sse2 in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_avx in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx2 in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_avx2 in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx2_128 in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_avx2_128 in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx512 in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_avx512 in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx_128_fma in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_avx_128_fma in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx_512 in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_avx_512 in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_kcvi in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_kcvi in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_altivec in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_altivec in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_neon in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_neon in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_vsx in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_vsx in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_altivec in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_altivec in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_altivec in /usr/lib/libfftw3f.so -- Looking for fftwf_have_altivec in /usr/lib/libfftw3f.so - not found -- Using external FFT library - FFTW3 -- Checking that user BLAS library openblas works -- Looking for dgemm_ -- Looking for dgemm_ - found -- Checking that user LAPACK library openblas works -- Looking for cheev_ -- Looking for cheev_ - found -- Checking for dlopen -- Performing Test HAVE_DLOPEN -- Performing Test HAVE_DLOPEN - Success -- Checking for dlopen - found -- Using dynamic plugins (e.g VMD-supported file formats) -- Checking for suitable VMD version -- VMD plugins not found. Path to VMD can be set with VMDDIR. -- Using default binary suffix: "" -- Using default library suffix: "" -- Could not convert sample image, ImageMagick convert can not be used -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Can not build documentation with Python 3 -- Performing Test HAS_NO_UNUSED_VARIABLE -- Performing Test HAS_NO_UNUSED_VARIABLE - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Performing Test HAS_NO_MISSING_DECL -- Performing Test HAS_NO_MISSING_DECL - Success -- Performing Test HAS_NO_MISSING_PROTO -- Performing Test HAS_NO_MISSING_PROTO - Failed -- Performing Test HAS_NO_MSVC_UNUSED -- Performing Test HAS_NO_MSVC_UNUSED - Failed -- Performing Test HAS_DECL_IN_SOURCE -- Performing Test HAS_DECL_IN_SOURCE - Failed -- Performing Test LMFIT_LINKS_OK -- Performing Test LMFIT_LINKS_OK - Success -- Found lmfit: /usr/include (found version "8.2") -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE GMX_EXTERNAL_LMFIT INCLUDE_INSTALL_DIR LIB_INSTALL_DIR SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/gromacs-2019.6/serial + /usr/bin/make -O -j5 V=1 VERBOSE=1 /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2019.6 -B/builddir/build/BUILD/gromacs-2019.6/serial --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019.6/serial/CMakeFiles /builddir/build/BUILD/gromacs-2019.6/serial/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/programs /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/programs /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/CMakeFiles/mdrun_objlib.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/CMakeFiles/mdrun_objlib.dir/depend.internal". Scanning dependencies of target mdrun_objlib make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/programs /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/programs /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/CMakeFiles/view_objlib.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/CMakeFiles/view_objlib.dir/depend.internal". Scanning dependencies of target view_objlib make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/CMakeFiles/libgromacs_external.dir/depend.internal". 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cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/fgrid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/view/fgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 1%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/filter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/filter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/view/filter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 1%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/logo.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/logo.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/view/logo.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/gmx_arpack.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/linearalgebra/gmx_arpack.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp In file included from /usr/include/string.h:495, from /usr/include/c++/9/cstring:42, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:41: In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2046:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2050:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2054:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2058:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2022:25: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2074:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2089:25: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4910:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4914:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4918:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4922:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_smake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' trncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4886:25: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4938:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4953:25: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dseupd_(int*, const char*, int*, double*, double*, int*, double*, const char*, int*, const char*, int*, double*, double*, int*, double*, int*, int*, int*, double*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2507:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dseupd_(int*, const char*, int*, double*, double*, int*, double*, const char*, int*, const char*, int*, double*, double*, int*, double*, int*, int*, int*, double*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2503:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dseupd_(int*, const char*, int*, double*, double*, int*, double*, const char*, int*, const char*, int*, double*, double*, int*, double*, int*, int*, int*, double*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2499:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dseupd_(int*, const char*, int*, double*, double*, int*, double*, const char*, int*, const char*, int*, double*, double*, int*, double*, int*, int*, int*, double*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2495:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void sseupd_(int*, const char*, int*, float*, float*, int*, float*, const char*, int*, const char*, int*, float*, float*, int*, float*, int*, int*, int*, float*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:5371:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void sseupd_(int*, const char*, int*, float*, float*, int*, float*, const char*, int*, const char*, int*, float*, float*, int*, float*, int*, int*, int*, float*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:5367:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void sseupd_(int*, const char*, int*, float*, float*, int*, float*, const char*, int*, const char*, int*, float*, float*, int*, float*, int*, int*, int*, float*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:5363:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void sseupd_(int*, const char*, int*, float*, float*, int*, float*, const char*, int*, const char*, int*, float*, float*, int*, float*, int*, int*, int*, float*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:5359:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 1%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/moduletest.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_test_objlib.dir/moduletest.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests/moduletest.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/matrix.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/linearalgebra/matrix.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/matrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 1%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/manager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/manager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/view/manager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 1%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/energycomparison.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_test_objlib.dir/energycomparison.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests/energycomparison.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/nrjac.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/linearalgebra/nrjac.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/nrjac.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/sparsematrix.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/linearalgebra/sparsematrix.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/sparsematrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/errhandler.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/errhandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/tmpi_malloc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 4%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/molps.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/molps.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/view/molps.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/atomic.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/atomic.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/atomic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/lock.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/lock.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/lock.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 4%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/nleg.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/nleg.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/view/nleg.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/pthreads.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/pthreads.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/system_error.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/system_error.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/system_error.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 4%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/terminationhelper.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_test_objlib.dir/terminationhelper.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests/terminationhelper.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/alltoall.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/alltoall.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/alltoall.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 1%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/simulationdatabase.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_test_objlib.dir/simulationdatabase.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests/simulationdatabase.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/p2p_protocol.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/p2p_protocol.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/p2p_protocol.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/barrier.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/barrier.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/barrier.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 4%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/nmol.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/nmol.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/view/nmol.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/p2p_send_recv.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/p2p_send_recv.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/p2p_send_recv.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/bcast.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/bcast.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/bcast.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 5%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/popup.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/popup.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/view/popup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/p2p_wait.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/p2p_wait.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/p2p_wait.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 5%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/pulldown.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/pulldown.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/view/pulldown.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/collective.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/collective.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/collective.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/profile.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/profile.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/profile.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/comm.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/comm.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/comm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/reduce.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/reduce.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/reduce.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/event.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/event.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/event.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/reduce_fast.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/reduce_fast.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/reduce_fast.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 5%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/view.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/view.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/view/view.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 4%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/trajectoryreader.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_test_objlib.dir/trajectoryreader.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests/trajectoryreader.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/scatter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/scatter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/scatter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/gather.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/gather.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/gather.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 5%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/x11.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/x11.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/view/x11.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/group.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/group.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/group.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_init.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_init.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/tmpi_init.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/topology.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/topology.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/topology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/list.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/list.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/list.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 6%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/xdlghi.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/xdlghi.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/view/xdlghi.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 6%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/xdlg.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/xdlg.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/view/xdlg.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 6%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/xdlgitem.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/xdlgitem.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/view/xdlgitem.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 6%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/xmb.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/xmb.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/view/xmb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 6%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/xutil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/xutil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/view/xutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 6%] Built target view_objlib make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/type.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/type.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/type.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/scan.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/scan.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/scan.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/numa_malloc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/numa_malloc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/numa_malloc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/once.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/once.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/once.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 8%] Built target libgromacs_external make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 4%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/trajectorycomparison.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_test_objlib.dir/trajectorycomparison.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests/trajectorycomparison.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 8%] Built target mdrun_test_objlib make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/selection/scanner.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/selection/scanner.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/scanner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/selection/parser.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/selection/parser.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/parser.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 22%] Built target libgromacs_generated make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 22%] Generating baseversion-gen.cpp cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/builddir/build/BUILD/gromacs-2019.6/serial/VersionInfo.cmake -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/baseversion-gen.cpp.cmakein -D VERSION_OUT=utility/baseversion-gen.cpp -D GMX_SOURCE_DOI=10.5281/zenodo.3685922 -P /builddir/build/BUILD/gromacs-2019.6/cmake/gmxConfigureVersionInfo.cmake cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/cmake -E touch utility/baseversion-gen.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 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Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/CMakeFiles/libgromacs.dir/depend.internal". Scanning dependencies of target libgromacs make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlinemodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlineinit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlinehelpcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlineoptionsmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlinehelpwriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlineparser.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/filenm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlinemodulemanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlinehelpmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlineprogramcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/viewit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/shellcompletions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/atomdistribution.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/box.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/box.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/box.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/pargs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/dlb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/dlbtiming.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/cellsizes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/collect.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/collect.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/collect.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_network.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/distribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_setup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_constraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_vsite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_specatomcomm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/localatomset.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/ga2la.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/dump.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/dump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/localatomsetdata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/localatomsetmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/utility.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/utility.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/3dtransforms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/functions.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/functions.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/functions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/do_fit.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/do_fit.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/do_fit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_topology.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_topology.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_topology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/units.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/units.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/units.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/utilities.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/utilities.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/utilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/veccompare.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/veccompare.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/veccompare.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/invertmatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/redistribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/vecdump.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/vecdump.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/vecdump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/md_enums.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/iforceprovider.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/df_history.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/observableshistory.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/inputrec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/helpmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/state.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/state.h:59, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/state.cpp:40: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/state.h:59, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/state.cpp:40: /usr/include/c++/9/bits/stl_vector.h: In function 'void init_gtc_state(t_state*, int, int, int)': /usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 957 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 957 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 957 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 957 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 957 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/helpformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/helptopic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/boxutilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/rstparser.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc-simd.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/pbc-simd.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/pbc-simd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/partition.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/random/seed.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/random/seed.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/seed.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/rmpbc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tabulatednormaldistribution.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/helpwritercontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/pbc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/mshift.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/splineutil.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/splineutil.cpp: In function 'real gmx::internal::findSmallestQuotientOfFunctionAndSecondDerivative(gmx::ArrayRef, double, const std::pair&)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/splineutil.cpp:212:1: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 212 | findSmallestQuotientOfFunctionAndSecondDerivative(ArrayRef function, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/splineutil.cpp: In function 'real gmx::internal::findSmallestQuotientOfFunctionAndThirdDerivative(gmx::ArrayRef, double, const std::pair&)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/splineutil.cpp:290:1: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 290 | findSmallestQuotientOfFunctionAndThirdDerivative(ArrayRef function, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/splineutil.cpp: In function 'void gmx::internal::throwUnlessDerivativeIsConsistentWithFunction(gmx::ArrayRef, gmx::ArrayRef, double, const std::pair&)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/splineutil.cpp:112:1: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 112 | throwUnlessDerivativeIsConsistentWithFunction(ArrayRef function, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/splineutil.cpp:112:1: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/splineutil.cpp: In function 'std::vector gmx::internal::vectorSecondDerivative(gmx::ArrayRef, double)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/splineutil.cpp:309:1: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 309 | vectorSecondDerivative(ArrayRef f, double spacing) | ^~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/forcetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/walltime_accounting.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/wallcycle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/cubicsplinetable.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/cubicsplinetable.cpp: In constructor 'gmx::CubicSplineTable::CubicSplineTable(std::initializer_list, const std::pair&, real)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/cubicsplinetable.cpp:397:1: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 397 | CubicSplineTable::CubicSplineTable(std::initializer_list numericalInputList, | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/cubicsplinetable.cpp:397:1: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/atomprop.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atoms.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/atoms.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/atoms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/quadraticsplinetable.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/quadraticsplinetable.cpp: In constructor 'gmx::QuadraticSplineTable::QuadraticSplineTable(std::initializer_list, const std::pair&, real)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/quadraticsplinetable.cpp:361:1: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 361 | QuadraticSplineTable::QuadraticSplineTable(std::initializer_list numericalInputList, | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/quadraticsplinetable.cpp:170:100: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 170 | std::vector thirdDerivative(internal::vectorSecondDerivative(derivative, inputSpacing)); | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/block.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/block.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/block.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/ifunc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/atomsbuilder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/forcefieldparameters.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/exclusionblocks.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/invblock.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/invblock.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/invblock.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/idef.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/idef.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/idef.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/residuetypes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/symtab.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/symtab.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/symtab.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/alignedallocator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/index.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/index.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/index.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/baseversion.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/topsort.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/topsort.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/topsort.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o cd 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'/builddir/build/BUILD/gromacs-2019.6/serial' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/topology.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/topology.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/topology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/compare.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/compare.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/compare.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/binaryinformation.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/binaryinformation.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/binaryinformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/coolstuff.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/errorcodes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/cstringutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/errorformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/mtop_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/fatalerror.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/fileredirector.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/directoryenumerator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/datafilefinder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/gmxassert.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/exceptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/futil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/futil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/futil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/gmxomp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/filestream.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/filestream.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/filestream.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/init.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/init.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/init.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxregex.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/gmxregex.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/gmxregex.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/int64_to_int.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/ikeyvaluetreeerror.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/inmemoryserializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/logger.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/logger.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/logger.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/messagestringcollector.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/messagestringcollector.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/messagestringcollector.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/keyvaluetree.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/niceheader.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/loggerbuilder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/pleasecite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/programcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/physicalnodecommunicator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/smalloc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/keyvaluetreeserializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/strdb.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/strdb.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/strdb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/path.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/path.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/path.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/strconvert.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/txtdump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/textreader.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/textreader.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/textreader.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/textwriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/variant.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/variant.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/variant.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/stringutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/confio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/confio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/confio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/filetypes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/espio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/espio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/espio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/gmx_internal_xdr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/g96io.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/enxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio-xdr.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmxfio-xdr.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/gmxfio-xdr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/gmxfio.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/gmxfio.h:44, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/gmxfio.cpp:39: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {}; _Tp = gmx_file_position_t; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In function 'std::vector gmx_fio_get_output_file_positions()': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/keyvaluetreetransform.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/md5.cpp.o cd 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Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/groio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/groio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/groio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/libxdrf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/mtxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/oenv.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/matio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/matio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/matio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/timecontrol.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/checkpoint.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/trrio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/tngio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/warninp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops 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-mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/xdrd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/writeps.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 39%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/__/external/vmd_molfile/vmddlopen.c.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/vmd_molfile/vmddlopen.c.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/vmd_molfile/vmddlopen.c make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/xtcio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/xvgr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/readinp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/swap/swapcoords.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/output.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pulling/output.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/output.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/tpxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/essentialdynamics/edsam.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pull.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pull.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pull.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/arrayref.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pull.h:58, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pull.cpp:39: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {t_pull_coord&}; _Tp = pull_coord_work_t; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {t_pull_group&, gmx::LocalAtomSet, const bool&}; _Tp = pull_group_work_t; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const t_pull_group&, const gmx::LocalAtomSet&, bool&}; _Tp = pull_group_work_t; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/include/c++/9/bits/vector.tcc: In function 'pull_t* init_pull(FILE*, const pull_params_t*, const t_inputrec*, const gmx_mtop_t*, const t_commrec*, gmx::LocalAtomSetManager*, real)': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pull.cpp:2259:1: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 2259 | } | ^ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pull.cpp:2259:1: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pullutil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pullutil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pullutil.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/stringutil.h:50, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/network.h:48, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pullutil.cpp:45: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/stringutil.h:50, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/network.h:48, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pullutil.cpp:45: /usr/include/c++/9/bits/stl_vector.h: In function 'void allocStatePrevStepPullCom(t_state*, pull_t*)': /usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 957 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasparams.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasparams.h:53, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasparams.cpp:47: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In constructor 'gmx::BiasParams::BiasParams(const gmx::AwhParams&, const gmx::AwhBiasParams&, const std::vector&, double, double, gmx::BiasParams::DisableUpdateSkips, int, const std::vector&, int)': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/bias.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/bias.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp: In member function 'void gmx::Bias::updateForceCorrelationGrid(gmx::ArrayRef, double)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp:378:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 378 | void Bias::updateForceCorrelationGrid(gmx::ArrayRef probWeightNeighbor, | ^~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp:399:45: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 399 | state_.calcUmbrellaForceAndPotential(dimParams_, grid_, indexNeighbor, forceFromNeighbor); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp:70: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/correlationgrid.h:107:41: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 107 | tensors_[pointIndex].addData(weight, data, blockLengthMeasure == BlockLengthMeasure::Weight, t); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp: In member function 'gmx::ArrayRef gmx::Bias::calcForceAndUpdateBias(const double*, double*, double*, const t_commrec*, const gmx_multisim_t*, double, int64_t, int64_t, FILE*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp:144:39: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 144 | updateForceCorrelationGrid(probWeightNeighbor, t); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp:162:34: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 162 | state_.calcConvolvedForce(dimParams_, grid_, probWeightNeighbor, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 | tempForce_, biasForce_); | ~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp:162:34: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp:162:34: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp:162:34: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp:173:49: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 173 | state_.calcUmbrellaForceAndPotential(dimParams_, grid_, coordState.umbrellaGridpoint(), biasForce_); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp:182:54: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 182 | double newPotential = state_.moveUmbrella(dimParams_, grid_, probWeightNeighbor, biasForce_, step, seed, params_.biasIndex); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp:182:54: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp:182:54: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biassharing.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/biassharing.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biassharing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pull_rotation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/awh.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/awh.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/awh.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/awh.h:69, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/awh.cpp:47: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double&, const double&, const double&}; _Tp = gmx::DimParams; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gmx::Bias, std::vector >&}; _Tp = gmx::BiasCoupledToSystem; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/include/c++/9/bits/vector.tcc: In constructor 'gmx::Awh::Awh(FILE*, const t_inputrec&, const t_commrec*, const gmx_multisim_t*, const gmx::AwhParams&, const string&, pull_t*)': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/coordstate.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/coordstate.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/coordstate.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/coordstate.cpp: In member function 'void gmx::CoordState::sampleUmbrellaGridpoint(const gmx::Grid&, int, gmx::ArrayRef, int64_t, int64_t, int)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/coordstate.cpp:131:1: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 131 | CoordState::sampleUmbrellaGridpoint(const Grid &grid, | ^~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biaswriter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/biaswriter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biaswriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationtensor.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationtensor.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/correlationtensor.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/correlationtensor.cpp: In member function 'void gmx::CorrelationTensor::addData(double, gmx::ArrayRef, bool, double)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/correlationtensor.cpp:226:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 226 | void CorrelationTensor::addData(double weight, | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/correlationtensor.cpp:226:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/correlationtensor.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/correlationtensor.cpp:47: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {int&, double}; _Tp = gmx::CorrelationBlockData; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In constructor 'gmx::CorrelationTensor::CorrelationTensor(int, int, double)': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/correlationhistory.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/pointstate.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/pointstate.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/pointstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationgrid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationgrid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/correlationgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/histogramsize.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/histogramsize.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/histogramsize.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/histogramsize.cpp: In member function 'double gmx::HistogramSize::newHistogramSizeInitialStage(const gmx::BiasParams&, double, bool, gmx::ArrayRef, FILE*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/histogramsize.cpp:78:8: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 78 | double HistogramSize::newHistogramSizeInitialStage(const BiasParams ¶ms, | ^~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/histogramsize.cpp: In member function 'double gmx::HistogramSize::newHistogramSize(const gmx::BiasParams&, double, bool, const std::vector&, gmx::ArrayRef, FILE*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/histogramsize.cpp:210:8: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 210 | double HistogramSize::newHistogramSize(const BiasParams ¶ms, | ^~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/histogramsize.cpp:242:56: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 242 | newHistogramSize = newHistogramSizeInitialStage(params, t, covered, weightsumCovering, fplog); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/histogramsize.cpp:242:56: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/grid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/grid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/grid.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/dimparams.h:52, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/grid.h:60, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/grid.cpp:47: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double&, double&, double&, double&}; _Tp = gmx::GridAxis; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In constructor 'gmx::Grid::Grid(const std::vector&, const gmx::AwhDimParams*)': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&, const double&, double, int&}; _Tp = gmx::GridAxis; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In function 'void gmx::mapGridToDataGrid(std::vector*, const double* const*, int, const string&, const gmx::Grid&, const string&)': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/grid.cpp:830:1: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 830 | } | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/imd/imdsocket.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/simd/support.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/simd/support.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/support.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp: In function 'void gmx::{anonymous}::sumOverSimulations(gmx::ArrayRef, const t_commrec*, const gmx_multisim_t*) [with T = double]': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:128:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 128 | void sumOverSimulations(gmx::ArrayRef arrayRef, | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp: In function 'void gmx::{anonymous}::updateTargetDistribution(gmx::ArrayRef, const gmx::BiasParams&)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:293:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 293 | void updateTargetDistribution(gmx::ArrayRef pointState, | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp: In member function 'double gmx::BiasState::calcUmbrellaForceAndPotential(const std::vector&, const gmx::Grid&, int, gmx::ArrayRef) const': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:423:8: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 423 | double BiasState::calcUmbrellaForceAndPotential(const std::vector &dimParams, | ^~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp: In member function 'void gmx::BiasState::calcConvolvedForce(const std::vector&, const gmx::Grid&, gmx::ArrayRef, gmx::ArrayRef, gmx::ArrayRef) const': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:443:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 443 | void BiasState::calcConvolvedForce(const std::vector &dimParams, | ^~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:443:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:443:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:463:38: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 463 | calcUmbrellaForceAndPotential(dimParams, grid, indexNeighbor, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 | forceFromNeighbor); | ~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp: In member function 'double gmx::BiasState::moveUmbrella(const std::vector&, const gmx::Grid&, gmx::ArrayRef, gmx::ArrayRef, int64_t, int64_t, int)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:474:8: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 474 | double BiasState::moveUmbrella(const std::vector &dimParams, | ^~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:474:8: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:474:8: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:483:40: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 483 | coordState_.sampleUmbrellaGridpoint(grid, coordState_.gridpointIndex(), probWeightNeighbor, step, seed, indexSeed); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:483:40: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:487:38: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 487 | calcUmbrellaForceAndPotential(dimParams, grid, coordState_.umbrellaGridpoint(), newForce); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp: In member function 'void gmx::BiasState::sampleProbabilityWeights(const gmx::Grid&, gmx::ArrayRef)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:1231:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 1231 | void BiasState::sampleProbabilityWeights(const Grid &grid, | ^~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp: In member function 'void gmx::BiasState::sampleCoordAndPmf(const gmx::Grid&, gmx::ArrayRef, double)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:1286:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 1286 | void BiasState::sampleCoordAndPmf(const Grid &grid, | ^~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp: In member function 'void gmx::BiasState::updateFreeEnergyAndAddSamplesToHistogram(const std::vector&, const gmx::Grid&, const gmx::BiasParams&, const t_commrec*, const gmx_multisim_t*, double, int64_t, FILE*, std::vector*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:1074:62: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 1074 | double newHistogramSize = histogramSize_.newHistogramSize(params, t, detectedCovering, points_, weightSumCovering_, fplog); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:1074:62: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:1074:62: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:1074:62: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:1074:62: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:1074:62: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:1074:62: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:1074:62: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/angle_correction.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/angle_correction.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/angle_correction.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/imd/imd.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/dens_filter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/dens_filter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/read-params.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/read-params.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/read-params.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/cmat.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/cmat.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/cmat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/eigio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/eigio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/eigio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/fitahx.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/fitahx.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/fitahx.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/anadih.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/anadih.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/anadih.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dlist.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/dlist.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/dlist.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_anadock.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_anadock.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_anadock.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_angle.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_angle.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_angle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_analyze.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_analyze.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_analyze.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bundle.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_bundle.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_bundle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_anaeig.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_anaeig.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_anaeig.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_awh.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_awh.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_awh.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bar.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_bar.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_bar.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_clustsize.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_clustsize.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_clustsize.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_confrms.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_confrms.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_confrms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_chi.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_chi.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_chi.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_covar.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_covar.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_covar.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_density.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_density.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_density.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_current.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_current.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_current.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densmap.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_densmap.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_densmap.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dielectric.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_dielectric.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_dielectric.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_cluster.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_cluster.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_cluster.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densorder.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_densorder.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_densorder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dos.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_dos.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_dos.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dyecoupl.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_dyecoupl.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_dyecoupl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dipoles.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_dipoles.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_dipoles.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_do_dssp.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_do_dssp.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_do_dssp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dyndom.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_dyndom.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_dyndom.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_disre.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_disre.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_disre.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_eneconv.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_eneconv.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_eneconv.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_enemat.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_enemat.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_enemat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_editconf.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_editconf.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_editconf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_filter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_filter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_filter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_genpr.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_genpr.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_genpr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_gyrate.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_gyrate.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_gyrate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_h2order.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_h2order.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_h2order.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_genion.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_genion.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_genion.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_energy.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_energy.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_energy.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helix.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_helix.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_helix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_lie.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_lie.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_lie.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helixorient.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_helixorient.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_helixorient.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hydorder.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_hydorder.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_hydorder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_make_edi.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_make_edi.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_make_edi.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mk_angndx.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_mk_angndx.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_mk_angndx.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mdmat.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_mdmat.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_mdmat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_make_ndx.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_make_ndx.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_make_ndx.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mindist.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_mindist.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_mindist.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_morph.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_morph.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_morph.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hbond.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_hbond.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_hbond.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmens.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_nmens.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_nmens.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmeig.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_nmeig.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_nmeig.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmtraj.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_nmtraj.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_nmtraj.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_msd.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_msd.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_msd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmr.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_nmr.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_nmr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_polystat.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_polystat.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_polystat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_principal.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_principal.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_principal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_potential.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_potential.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_potential.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_order.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_order.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_order.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rama.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_rama.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_rama.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_pme_error.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_pme_error.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_pme_error.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotacf.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_rotacf.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_rotacf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsf.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_rmsf.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_rmsf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotmat.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_rotmat.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_rotmat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saltbr.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_saltbr.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_saltbr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsdist.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_rmsdist.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_rmsdist.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saxs.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_saxs.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_saxs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sigeps.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_sigeps.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_sigeps.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sans.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_sans.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_sans.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rms.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_rms.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_rms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sorient.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_sorient.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_sorient.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spatial.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_spatial.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_spatial.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spol.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_spol.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_spol.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_tcaf.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_tcaf.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_tcaf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sham.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_sham.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_sham.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_trjorder.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_trjorder.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_trjorder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_traj.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_traj.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_traj.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_trjcat.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_trjcat.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_trjcat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_velacc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_velacc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_velacc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_vanhove.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_vanhove.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_vanhove.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_trjconv.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_trjconv.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_trjconv.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wheel.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_wheel.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_wheel.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_tune_pme.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_tune_pme.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_tune_pme.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nrama.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/nrama.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/nrama.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/hxprops.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/hxprops.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/hxprops.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/powerspect.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/powerspect.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/powerspect.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/pp2shift.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/pp2shift.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/pp2shift.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/princ.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/princ.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/princ.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_xpm2ps.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_xpm2ps.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_xpm2ps.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nsfactor.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/nsfactor.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/nsfactor.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/thermochemistry.cpp.o cd 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'/builddir/build/BUILD/gromacs-2019.6/serial' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/add_par.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/add_par.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/add_par.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/calch.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/calch.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/calch.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/sfactor.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/sfactor.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/sfactor.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wham.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_wham.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_wham.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/convparm.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/convparm.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/convparm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/fflibutil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/fflibutil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/fflibutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_maxwell_velocities.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gen_maxwell_velocities.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/gen_maxwell_velocities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_ad.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gen_ad.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/gen_ad.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genhydro.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/genhydro.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/genhydro.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_bond_atomtype.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_bond_atomtype.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/gpp_bond_atomtype.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genconf.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/genconf.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/genconf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_atomtype.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_atomtype.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/gpp_atomtype.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_nextnb.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_nextnb.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/gpp_nextnb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/h_db.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/h_db.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/h_db.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gmxcpp.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gmxcpp.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/gmxcpp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_vsite.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gen_vsite.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/gen_vsite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hackblock.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/hackblock.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/hackblock.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hizzie.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/hizzie.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/hizzie.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/makeexclusiondistances.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/makeexclusiondistances.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/makeexclusiondistances.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/keyvaluetreemdpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/keyvaluetreemdpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/keyvaluetreemdpwriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/nm2type.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/nm2type.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/nm2type.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pgutil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/pgutil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/pgutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/insert-molecules.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/insert-molecules.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/insert-molecules.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/grompp.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/grompp.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/grompp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2top.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2top.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/pdb2top.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readrot.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/readrot.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/readrot.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readpull.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/readpull.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/readpull.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/resall.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/resall.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/resall.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2gmx.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2gmx.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/pdb2gmx.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/ter_db.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/ter_db.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/ter_db.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/specbond.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/specbond.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/specbond.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/tomorse.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/tomorse.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/tomorse.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topdirs.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/topdirs.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/topdirs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topshake.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/topshake.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/topshake.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/solvate.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/solvate.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/solvate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/toputil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/topio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/topio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toppush.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/toppush.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/toppush.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/x2top.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/x2top.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/x2top.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/crosscorr.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/correlationfunctions/crosscorr.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/correlationfunctions/crosscorr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/xlate.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/xlate.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/xlate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/vsite_parm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/gmx_lmcurve.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/correlationfunctions/gmx_lmcurve.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/correlationfunctions/gmx_lmcurve.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/integrate.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/correlationfunctions/integrate.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/correlationfunctions/integrate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/polynomials.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/correlationfunctions/polynomials.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/correlationfunctions/polynomials.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/expfit.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/correlationfunctions/expfit.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/correlationfunctions/expfit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/autocorr.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/correlationfunctions/autocorr.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/correlationfunctions/autocorr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/manyautocorrelation.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/correlationfunctions/manyautocorrelation.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/correlationfunctions/manyautocorrelation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/statistics/statistics.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/statistics/statistics.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/statistics/statistics.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/abstractdata.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/abstractdata.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/abstractdata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodule.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/datamodule.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/datamodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/analysisdata.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/analysisdata.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/analysisdata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataframe.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/dataframe.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/dataframe.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readir.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/readir.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/readir.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/arraydata.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/arraydata.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/arraydata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataproxy.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/dataproxy.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/dataproxy.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/frameaverager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/modules/frameaverager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/modules/frameaverager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodulemanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/datamodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/datamodulemanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/average.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/modules/average.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/modules/average.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/modules/displacement.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datastorage.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/datastorage.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/datastorage.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/centerofmass.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/centerofmass.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/centerofmass.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/lifetime.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/modules/lifetime.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/modules/lifetime.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/plot.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/modules/plot.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/modules/plot.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/mempool.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/mempool.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/mempool.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/histogram.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/modules/histogram.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/modules/histogram.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/evaluate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/indexutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/nbsearch.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/poscalc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/position.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/position.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/position.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/compiler.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/compiler.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/compiler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/parsetree.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/params.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/params.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/params.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/scanner_internal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selection.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/selection.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/selection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionbehavior.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/selectionoptionbehavior.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/selectionoptionbehavior.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/selectionoptionmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selelem.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/selelem.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/selelem.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/selvalue.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/selectionoption.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/selmethod.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/selectioncollection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/selhelp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_compare.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_compare.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/sm_compare.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/sm_distance.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_merge.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_merge.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/sm_merge.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_insolidangle.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_insolidangle.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/sm_insolidangle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_position.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_position.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/sm_position.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_permute.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_permute.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/sm_permute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_keywords.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_keywords.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/sm_keywords.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_same.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_same.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/sm_same.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_simple.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_simple.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/sm_simple.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysissettings.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/analysissettings.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/analysissettings.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/symrec.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/symrec.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/symrec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/modules.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/cmdlinerunner.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/cmdlinerunner.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/cmdlinerunner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysismodule.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/analysismodule.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/analysismodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/freevolume.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/freevolume.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/modules/freevolume.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/analysismodule.h:49, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/modules/freevolume.h:45, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/modules/freevolume.cpp:44: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/distance.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/distance.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/modules/distance.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/pairdist.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/pairdist.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/modules/pairdist.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/angle.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/angle.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/modules/angle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/rdf.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/rdf.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/modules/rdf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/trajectory.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/trajectory.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/modules/trajectory.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/surfacearea.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/surfacearea.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/modules/surfacearea.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/sasa.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/sasa.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/modules/sasa.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/runnercommon.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/runnercommon.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/runnercommon.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/select.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/select.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/modules/select.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/topologyinformation.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/topologyinformation.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/topologyinformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/check.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/tools/check.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tools/check.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/chargegroup.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/chargegroup.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/chargegroup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/dump.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/tools/dump.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tools/dump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/convert_tpr.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/tools/convert_tpr.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tools/convert_tpr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/conformation-utilities.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/conformation-utilities.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/conformation-utilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/report-methods.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/tools/report-methods.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tools/report-methods.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nrnb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/network.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic_cg.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic_cg.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_generic_cg.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_generic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nonbonded.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nonbonded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_free_energy.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/boxdeformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/calcmu.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/calcvir.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/checkpointhandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/compute_io.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/constraintrange.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/ebin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/calc_verletbuf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/broadcaststructs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/constr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/gmx_omp_nthreads.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/force.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/force.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/force.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/coupling.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/groupcoord.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/expanded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/md_support.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdatoms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/lincs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/forcerec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdebin_bar.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdoutf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdsetup.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdsetup.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdsetup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdebin.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdebin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_atomdata.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_atomdata.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_atomdata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_grid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_grid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_grid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/membed.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nsgrid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nsgrid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nsgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/perf_est.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_tuning.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_tuning.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_tuning.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/qm_gamess.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/qm_mopac.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/qm_orca.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/qm_gaussian.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/rbin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qmmm.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qmmm.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/qmmm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/resethandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ns.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/ns.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/ns.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/rf_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sighandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/shake.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/settle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/simulationsignal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_search.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_search.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_search.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/splitter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/stat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shellfc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/shellfc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/shellfc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/stophandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/tgroup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/trajectory_writing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/vcm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/updategroupscog.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/wall.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wnblist.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/wnblist.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/wnblist.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/updategroups.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/update.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/update.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/disre.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/disre.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/disre.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/gpubonded-impl.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/gpubonded-impl.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/gpubonded-impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/listed-forces.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/listed-forces.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/listed-forces.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/bonded.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/bonded.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/bonded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/vsite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/listed-internal.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/listed-internal.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/listed-internal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied-forces/electricfield.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/applied-forces/electricfield.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/applied-forces/electricfield.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/manage-threading.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/manage-threading.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/manage-threading.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/pairs.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/pairs.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/pairs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/restcbt.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/restcbt.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/restcbt.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/position-restraints.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/position-restraints.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/position-restraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/orires.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/orires.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/orires.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald-utils.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/ewald-utils.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/ewald-utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/calculate-spline-moduli.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/calculate-spline-moduli.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/calculate-spline-moduli.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/ewald.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-gather.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gather.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-gather.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/long-range-correction.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/long-range-correction.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/long-range-correction.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-grid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-grid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-grid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-load-balancing.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-load-balancing.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-load-balancing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-pp.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-pp.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-pp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-redistribute.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-redistribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-spline-work.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-spline-work.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-spline-work.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-gpu-program.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gpu-program.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-gpu-program.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-gpu-program-impl.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gpu-program-impl.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-gpu-program-impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-solve.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-solve.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-solve.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fft/calcgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fft/fft.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-only.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-only.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-only.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fft/parallel_3dfft.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-spread.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-spread.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-spread.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/clfftinitializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fft/fft_fftw3.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/hostallocator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/gpu_hw_info.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/hardware/gpu_hw_info.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/gpu_hw_info.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fft/fft5d.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/gpu_utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/identifyavx512fmaunits.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/detecthardware.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/printhardware.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/integrator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/integrator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/integrator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/legacymdrunoptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/logging.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/logging.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/logging.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/cpuinfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/multisim.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/multisim.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/multisim.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/hardwaretopology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/replicaexchange.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/rerun.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/simulationcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/md.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/md.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/md.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/mimic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrunutility/handlerestart.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/minimize.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/mdmodules.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrunutility/mdmodules.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrunutility/mdmodules.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrunutility/threadaffinity.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/abstractsection.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/abstractsection.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/abstractsection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/behaviorcollection.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/behaviorcollection.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/behaviorcollection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/abstractoption.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/abstractoption.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/abstractoption.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/tpi.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/filenameoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/filenameoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/filenameoptionmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/runner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsection.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsection.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/optionsection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/options.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/options.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/options.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsvisitor.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsvisitor.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/optionsvisitor.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsassigner.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsassigner.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/optionsassigner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/filenameoption.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/filenameoption.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/filenameoption.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/restraint/manager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/restraint/manager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/restraint/manager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/timeunitmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/timeunitmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/timeunitmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/restraint/restraintmdmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [100%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/findallgputasks.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/findallgputasks.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/findallgputasks.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [100%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/reportgpuusage.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/reportgpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/reportgpuusage.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/decidegpuusage.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/decidegpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/decidegpuusage.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/treesupport.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/treesupport.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/treesupport.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [100%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/resourcedivision.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/resourcedivision.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/resourcedivision.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [100%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/usergpuids.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/usergpuids.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/usergpuids.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [100%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/taskassignment.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/taskassignment.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/taskassignment.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [100%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectory/trajectoryframe.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [100%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectory/energyframe.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [100%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/utility/baseversion-gen.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [100%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mimic/MimicUtils.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mimic/MimicUtils.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mimic/MimicUtils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [100%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mimic/MimicCommunicator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mimic/MimicCommunicator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mimic/MimicCommunicator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/hostallocator.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mimic/MimicCommunicator.h:39, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mimic/MimicCommunicator.cpp:37: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/basicoptions.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/basicoptions.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.h:50, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.cpp:44: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.h:50, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.cpp:44: /usr/include/c++/9/bits/stl_vector.h: In member function 'virtual void gmx::DoubleOptionStorage::processSetValues(gmx::OptionStorageTemplate::ValueList*)': /usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 957 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.h:50, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.cpp:44: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.h:50, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.cpp:44: /usr/include/c++/9/bits/stl_vector.h: In member function 'void gmx::OptionStorageTemplate::addValue(const T&) [with T = double]': /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h: In member function 'void gmx::OptionValueStoreNull::append(const T&) [with T = double]': /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h: In member function 'void gmx::OptionValueStoreVector::append(const T&) [with T = double]': /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.h:50, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.cpp:44: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.h:50, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.cpp:44: /usr/include/c++/9/bits/stl_vector.h: In member function 'void gmx::OptionStorageTemplate::addValue(const T&) [with T = long long int]': /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h: In member function 'void gmx::OptionValueStoreVector::append(const T&) [with T = long long int]': /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h: In member function 'void gmx::OptionValueStoreNull::append(const T&) [with T = long long int]': /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [100%] Linking CXX shared library ../../lib/libgromacs.so cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/cmake -E cmake_link_script CMakeFiles/libgromacs.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libgromacs.so.4 -o ../../lib/libgromacs.so.4.0.0 @CMakeFiles/libgromacs.dir/objects1.rsp /usr/lib/libtng_io.so.1.8.2 /usr/lib/libhwloc.so -ldl -lrt /usr/lib/libfftw3f.so -lopenblas -lopenblas -lpthread -fopenmp -lm /usr/lib/liblmfit.so cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/cmake -E cmake_symlink_library ../../lib/libgromacs.so.4.0.0 ../../lib/libgromacs.so.4 ../../lib/libgromacs.so make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [100%] Built target libgromacs make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' /usr/bin/make -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/depend /usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/programs /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/programs /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/CMakeFiles/gmx.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/CMakeFiles/gmx.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/CMakeFiles/gmx.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/CMakeFiles/gmx.dir/depend.internal". Scanning dependencies of target gmx make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' /usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/share/template /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/share/template /builddir/build/BUILD/gromacs-2019.6/serial/share/template/CMakeFiles/template.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/share/template/CMakeFiles/template.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/share/template/CMakeFiles/template.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/share/template/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/share/template/CMakeFiles/template.dir/depend.internal". Scanning dependencies of target template make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' /usr/bin/make -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [100%] Building CXX object src/programs/CMakeFiles/gmx.dir/gmx.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/gmx.dir/gmx.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/gmx.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [100%] Building CXX object src/programs/CMakeFiles/gmx.dir/legacymodules.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/gmx.dir/legacymodules.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/legacymodules.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [100%] Linking CXX executable ../../bin/gmx cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmx.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/gmx.dir/gmx.cpp.o CMakeFiles/gmx.dir/legacymodules.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o CMakeFiles/view_objlib.dir/view/3dview.cpp.o CMakeFiles/view_objlib.dir/view/buttons.cpp.o CMakeFiles/view_objlib.dir/view/dialogs.cpp.o CMakeFiles/view_objlib.dir/view/fgrid.cpp.o CMakeFiles/view_objlib.dir/view/filter.cpp.o CMakeFiles/view_objlib.dir/view/logo.cpp.o CMakeFiles/view_objlib.dir/view/manager.cpp.o CMakeFiles/view_objlib.dir/view/molps.cpp.o CMakeFiles/view_objlib.dir/view/nleg.cpp.o CMakeFiles/view_objlib.dir/view/nmol.cpp.o CMakeFiles/view_objlib.dir/view/popup.cpp.o CMakeFiles/view_objlib.dir/view/pulldown.cpp.o CMakeFiles/view_objlib.dir/view/view.cpp.o CMakeFiles/view_objlib.dir/view/x11.cpp.o CMakeFiles/view_objlib.dir/view/xdlg.cpp.o CMakeFiles/view_objlib.dir/view/xdlghi.cpp.o CMakeFiles/view_objlib.dir/view/xdlgitem.cpp.o CMakeFiles/view_objlib.dir/view/xmb.cpp.o CMakeFiles/view_objlib.dir/view/xutil.cpp.o -o ../../bin/gmx ../../lib/libgromacs.so.4.0.0 -fopenmp /usr/lib/libX11.so -lm make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [100%] Built target gmx make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [100%] Building CXX object share/template/CMakeFiles/template.dir/template.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/share/template && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/template.dir/template.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/share/template/template.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [100%] Linking CXX executable ../../bin/template cd /builddir/build/BUILD/gromacs-2019.6/serial/share/template && /usr/bin/cmake -E cmake_link_script CMakeFiles/template.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/template.dir/template.cpp.o -o ../../bin/template ../../lib/libgromacs.so.4.0.0 -fopenmp -lm make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [100%] Built target template make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019.6/serial/CMakeFiles 0 + popd ~/build/BUILD/gromacs-2019.6 + test -n '' + for mpi in '' mpich openmpi + test -n mpich + module load mpi/mpich-arm ++ /usr/share/lmod/lmod/libexec/lmod sh load mpi/mpich-arm + eval '__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib/mpich/lib:1;' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH=/usr/lib/mpich/lib;' export 'LD_LIBRARY_PATH;' '__LMOD_REF_COUNT_LOADEDMODULES=mpi/mpich-arm:1;' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES=mpi/mpich-arm;' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/man/mpich-arm:1\;/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=:/usr/share/man/mpich-arm:/usr/share/lmod/lmod/share/man;' export 'MANPATH;' '__LMOD_REF_COUNT_MODULEPATH=/etc/modulefiles:1\;/usr/share/modulefiles:1\;/usr/share/modulefiles/Linux:1\;/usr/share/modulefiles/Core:1\;/usr/share/lmod/lmod/modulefiles/Core:1;' export '__LMOD_REF_COUNT_MODULEPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' 'MPI_BIN=/usr/lib/mpich/bin;' export 'MPI_BIN;' 'MPI_COMPILER=mpich-arm;' export 'MPI_COMPILER;' 'MPI_FORTRAN_MOD_DIR=/usr/lib/gfortran/modules/mpich;' export 'MPI_FORTRAN_MOD_DIR;' 'MPI_HOME=/usr/lib/mpich;' export 'MPI_HOME;' 'MPI_INCLUDE=/usr/include/mpich-arm;' export 'MPI_INCLUDE;' 'MPI_LIB=/usr/lib/mpich/lib;' export 'MPI_LIB;' 'MPI_MAN=/usr/share/man/mpich-arm;' export 'MPI_MAN;' 'MPI_PYTHON2_SITEARCH=/usr/lib/python2.7/site-packages/mpich;' export 'MPI_PYTHON2_SITEARCH;' 'MPI_PYTHON3_SITEARCH=/usr/lib/python3.7/site-packages/mpich;' export 'MPI_PYTHON3_SITEARCH;' 'MPI_PYTHON_SITEARCH=/usr/lib/python2.7/site-packages/mpich;' export 'MPI_PYTHON_SITEARCH;' 'MPI_SUFFIX=_mpich;' export 'MPI_SUFFIX;' 'MPI_SYSCONFIG=/etc/mpich-arm;' export 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/lib/mpich/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/lib/mpich/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib/mpich/lib/pkgconfig:1\;/usr/lib/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=/usr/lib/mpich/lib/pkgconfig::/usr/lib/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' '__LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/mpich-arm:1;' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_=/usr/share/modulefiles/mpi/mpich-arm;' export '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=b3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib/mpich/lib:1 ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ LD_LIBRARY_PATH=/usr/lib/mpich/lib ++ export LD_LIBRARY_PATH ++ __LMOD_REF_COUNT_LOADEDMODULES=mpi/mpich-arm:1 ++ export __LMOD_REF_COUNT_LOADEDMODULES ++ LOADEDMODULES=mpi/mpich-arm ++ export LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH='/usr/share/man/mpich-arm:1;/usr/share/lmod/lmod/share/man:1' ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=:/usr/share/man/mpich-arm:/usr/share/lmod/lmod/share/man ++ export MANPATH ++ __LMOD_REF_COUNT_MODULEPATH='/etc/modulefiles:1;/usr/share/modulefiles:1;/usr/share/modulefiles/Linux:1;/usr/share/modulefiles/Core:1;/usr/share/lmod/lmod/modulefiles/Core:1' ++ export __LMOD_REF_COUNT_MODULEPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ MPI_BIN=/usr/lib/mpich/bin ++ export MPI_BIN ++ MPI_COMPILER=mpich-arm ++ export MPI_COMPILER ++ MPI_FORTRAN_MOD_DIR=/usr/lib/gfortran/modules/mpich ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib/mpich ++ export MPI_HOME ++ MPI_INCLUDE=/usr/include/mpich-arm ++ export MPI_INCLUDE ++ MPI_LIB=/usr/lib/mpich/lib ++ export MPI_LIB ++ MPI_MAN=/usr/share/man/mpich-arm ++ export MPI_MAN ++ MPI_PYTHON2_SITEARCH=/usr/lib/python2.7/site-packages/mpich ++ export MPI_PYTHON2_SITEARCH ++ MPI_PYTHON3_SITEARCH=/usr/lib/python3.7/site-packages/mpich ++ export MPI_PYTHON3_SITEARCH ++ MPI_PYTHON_SITEARCH=/usr/lib/python2.7/site-packages/mpich ++ export MPI_PYTHON_SITEARCH ++ MPI_SUFFIX=_mpich ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/mpich-arm ++ export MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/lib/mpich/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ~/build/BUILD/gromacs-2019.6/mpich ~/build/BUILD/gromacs-2019.6 ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/lib/mpich/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib/mpich/lib/pkgconfig:1;/usr/lib/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=/usr/lib/mpich/lib/pkgconfig::/usr/lib/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ __LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/mpich-arm:1 ++ export __LMOD_REF_COUNT__LMFILES_ ++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-arm ++ export _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=b3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ== ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + mkdir -p mpich + pushd mpich + test -z mpich + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -I/usr/lib/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -I/usr/lib/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS ++ test -n mpich ++ echo -DGMX_BUILD_MDRUN_ONLY:BOOL=ON -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_BINARY_SUFFIX=_mpich -DGMX_LIBS_SUFFIX=_mpich -DCMAKE_INSTALL_BINDIR=/usr/lib/mpich/bin ++ test -n '' ++ echo + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_TESTING:BOOL=ON -DCMAKE_SKIP_RPATH:BOOL=ON -DCMAKE_SKIP_BUILD_RPATH:BOOL=ON -DGMX_BLAS_USER=openblas -DGMX_BUILD_UNITTESTS:BOOL=ON -DGMX_EXTERNAL_LMFIT:BOOL=ON -DGMX_USE_LMFIT=external -DGMX_EXTERNAL_TNG:BOOL=ON -DGMX_EXTERNAL_TINYXML2:BOOL=OFF -DGMX_LAPACK_USER=openblas -DGMX_USE_RDTSCP=OFF -DGMX_SIMD=None ' ' -DGMX_BUILD_MDRUN_ONLY:BOOL=ON -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_BINARY_SUFFIX=_mpich -DGMX_LIBS_SUFFIX=_mpich -DCMAKE_INSTALL_BINDIR=/usr/lib/mpich/bin .. -- The C compiler identification is GNU 9.2.1 -- The CXX compiler identification is GNU 9.2.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Performing Test CXXFLAG_STD_CXX0X -- Performing Test CXXFLAG_STD_CXX0X - Success -- Performing Test CXX11_SUPPORTED -- Performing Test CXX11_SUPPORTED - Success -- Performing Test CXX11_STDLIB_PRESENT -- Performing Test CXX11_STDLIB_PRESENT - Success -- Looking for NVIDIA GPUs present in the system -- Could not detect NVIDIA GPUs -- No compatible CUDA toolkit found (v5.0+), disabling native GPU acceleration -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file regex.h -- Looking for include file regex.h - found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Looking for fedisableexcept in m -- Looking for fedisableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - not found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - not found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - not supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Check if the system is big endian -- Searching 16 bit integer -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- Found MPI_C: /usr/lib/mpich/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/mpich/lib/libmpicxx.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Checking for MPI_IN_PLACE -- Performing Test MPI_IN_PLACE_COMPILE_OK -- Performing Test MPI_IN_PLACE_COMPILE_OK - Success -- Checking for MPI_IN_PLACE - yes -- hwloc version: -- Found Hwloc: /usr/lib/libhwloc.so (found suitable version "2.0.4", minimum required is "1.5") -- Looking for C++ include pthread.h -- Looking for C++ include pthread.h - found -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Detected build CPU vendor - ARM -- Detected build CPU brand - ARMv7 Processor rev 2 (v7l) -- Detected build CPU family - 7 -- Detected build CPU model - 3 -- Detected build CPU stepping - 2 -- Detected build CPU features - neon -- Disabling RDTSCP support -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present with _FILE_OFFSET_BITS=64 -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Looking for C++ include regex -- Looking for C++ include regex - found -- Checking for system XDR support -- Checking for system XDR support - not present -- SIMD instructions disabled -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- Checking for module 'fftw3f' -- Found fftw3f, version 3.3.8 -- Looking for fftwf_plan_many_dft in /usr/lib/libfftw3f.so -- Looking for fftwf_plan_many_dft in /usr/lib/libfftw3f.so - found -- Looking for fftwf_plan_many_dft_r2c in /usr/lib/libfftw3f.so -- Looking for fftwf_plan_many_dft_r2c in /usr/lib/libfftw3f.so - found -- Looking for fftwf_plan_many_dft_c2r in /usr/lib/libfftw3f.so -- Looking for fftwf_plan_many_dft_c2r in /usr/lib/libfftw3f.so - found -- Looking for fftwf_have_simd_sse in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_sse in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_sse in /usr/lib/libfftw3f.so -- Looking for fftwf_have_sse in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_sse2 in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_sse2 in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_sse2 in /usr/lib/libfftw3f.so -- Looking for fftwf_have_sse2 in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_avx in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx2 in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_avx2 in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx2_128 in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_avx2_128 in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx512 in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_avx512 in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx_128_fma in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_avx_128_fma in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx_512 in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_avx_512 in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_kcvi in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_kcvi in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_altivec in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_altivec in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_neon in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_neon in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_vsx in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_vsx in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_altivec in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_altivec in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_altivec in /usr/lib/libfftw3f.so -- Looking for fftwf_have_altivec in /usr/lib/libfftw3f.so - not found -- Using external FFT library - FFTW3 -- Checking that user BLAS library openblas works -- Looking for dgemm_ -- Looking for dgemm_ - found -- Checking that user LAPACK library openblas works -- Looking for cheev_ -- Looking for cheev_ - found -- Checking for dlopen -- Performing Test HAVE_DLOPEN -- Performing Test HAVE_DLOPEN - Success -- Checking for dlopen - found -- GROMACS only supports plugins in a build that uses shared libraries, which can be disabled for various reasons. BUILD_SHARED_LIBS=on and a toolchain that supports dynamic linking is required. (Hint: GMX_PREFER_STATIC_LIBS and GMX_BUILD_MDRUN_ONLY can influence the default BUILD_SHARED_LIBS, so if you need plugins, reconsider those choices.) -- Not using dynamic plugins (e.g VMD-supported file formats) -- Using manually set binary suffix: "_mpich" -- Using manually set library suffix: "_mpich" -- Performing Test HAS_NO_UNUSED_VARIABLE -- Performing Test HAS_NO_UNUSED_VARIABLE - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Performing Test HAS_NO_MISSING_DECL -- Performing Test HAS_NO_MISSING_DECL - Success -- Performing Test HAS_NO_MISSING_PROTO -- Performing Test HAS_NO_MISSING_PROTO - Failed -- Performing Test HAS_NO_MSVC_UNUSED -- Performing Test HAS_NO_MSVC_UNUSED - Failed -- Performing Test HAS_DECL_IN_SOURCE -- Performing Test HAS_DECL_IN_SOURCE - Failed -- Performing Test LMFIT_LINKS_OK -- Performing Test LMFIT_LINKS_OK - Success -- Found lmfit: /usr/include (found version "8.2") -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE GMX_EXTERNAL_LMFIT INCLUDE_INSTALL_DIR LIB_INSTALL_DIR SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/gromacs-2019.6/mpich + /usr/bin/make -O -j5 V=1 VERBOSE=1 /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2019.6 -B/builddir/build/BUILD/gromacs-2019.6/mpich --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019.6/mpich/CMakeFiles /builddir/build/BUILD/gromacs-2019.6/mpich/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' cd /builddir/build/BUILD/gromacs-2019.6/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/programs /builddir/build/BUILD/gromacs-2019.6/mpich /builddir/build/BUILD/gromacs-2019.6/mpich/src/programs /builddir/build/BUILD/gromacs-2019.6/mpich/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/programs/CMakeFiles/mdrun_objlib.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/programs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/programs/CMakeFiles/mdrun_objlib.dir/depend.internal". Scanning dependencies of target mdrun_objlib make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' cd /builddir/build/BUILD/gromacs-2019.6/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/mpich /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/CMakeFiles/libgromacs_external.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/CMakeFiles/libgromacs_external.dir/depend.internal". Scanning dependencies of target libgromacs_external make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' cd /builddir/build/BUILD/gromacs-2019.6/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/mpich /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/CMakeFiles/libgromacs_generated.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/CMakeFiles/libgromacs_generated.dir/depend.internal". Scanning dependencies of target libgromacs_generated make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/eigensolver.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/eigensolver.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/eigensolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/matrix.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/matrix.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/matrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/sparsematrix.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/sparsematrix.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/sparsematrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/errhandler.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/errhandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/tmpi_malloc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/atomic.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/atomic.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/atomic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/nrjac.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/nrjac.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/nrjac.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/lock.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/lock.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/lock.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/pthreads.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/pthreads.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/system_error.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/system_error.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/system_error.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 1%] Building CXX object src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/mdrun.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 2%] Built target mdrun_objlib make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 3%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 3%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 3%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 3%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/gmx_arpack.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/gmx_arpack.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' In file included from /usr/include/string.h:495, from /usr/include/c++/9/cstring:42, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:41: In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2046:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2050:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2054:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2058:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2022:25: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2074:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2089:25: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4910:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4914:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4918:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4922:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4886:25: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4938:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4953:25: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dseupd_(int*, const char*, int*, double*, double*, int*, double*, const char*, int*, const char*, int*, double*, double*, int*, double*, int*, int*, int*, double*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2507:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dseupd_(int*, const char*, int*, double*, double*, int*, double*, const char*, int*, const char*, int*, double*, double*, int*, double*, int*, int*, int*, double*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2503:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dseupd_(int*, const char*, int*, double*, double*, int*, double*, const char*, int*, const char*, int*, double*, double*, int*, double*, int*, int*, int*, double*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2499:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dseupd_(int*, const char*, int*, double*, double*, int*, double*, const char*, int*, const char*, int*, double*, double*, int*, double*, int*, int*, int*, double*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2495:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void sseupd_(int*, const char*, int*, float*, float*, int*, float*, const char*, int*, const char*, int*, float*, float*, int*, float*, int*, int*, int*, float*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:5371:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void sseupd_(int*, const char*, int*, float*, float*, int*, float*, const char*, int*, const char*, int*, float*, float*, int*, float*, int*, int*, int*, float*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:5367:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void sseupd_(int*, const char*, int*, float*, float*, int*, float*, const char*, int*, const char*, int*, float*, float*, int*, float*, int*, int*, int*, float*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:5363:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void sseupd_(int*, const char*, int*, float*, float*, int*, float*, const char*, int*, const char*, int*, float*, float*, int*, float*, int*, int*, int*, float*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:5359:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 3%] Built target libgromacs_external make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 3%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 3%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 3%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 3%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 25%] Built target libgromacs_generated make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 25%] Generating baseversion-gen.cpp cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/builddir/build/BUILD/gromacs-2019.6/mpich/VersionInfo.cmake -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/baseversion-gen.cpp.cmakein -D VERSION_OUT=utility/baseversion-gen.cpp -D GMX_SOURCE_DOI=10.5281/zenodo.3685922 -P /builddir/build/BUILD/gromacs-2019.6/cmake/gmxConfigureVersionInfo.cmake cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/cmake -E touch utility/baseversion-gen.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' cd /builddir/build/BUILD/gromacs-2019.6/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/mpich /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/CMakeFiles/libgromacs.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/CMakeFiles/libgromacs.dir/depend.internal". Scanning dependencies of target libgromacs make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlinemodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlinehelpcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlineinit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlineoptionsmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlinehelpwriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlineparser.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/filenm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlinemodulemanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlinehelpmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlineprogramcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/viewit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/shellcompletions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/box.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/box.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/box.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/atomdistribution.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/pargs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/collect.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/collect.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/collect.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/cellsizes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/dlb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/dlbtiming.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_network.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/distribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_setup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_constraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_vsite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/dump.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/dump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_specatomcomm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/ga2la.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/localatomset.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/localatomsetdata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/localatomsetmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/utility.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/utility.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/3dtransforms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/functions.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/functions.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/functions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/do_fit.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/do_fit.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/do_fit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_topology.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_topology.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_topology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/units.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/units.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/units.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/utilities.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/utilities.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/utilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/veccompare.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/veccompare.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/veccompare.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/invertmatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/vecdump.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/vecdump.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/vecdump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/iforceprovider.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/redistribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/df_history.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/md_enums.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/observableshistory.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/helpmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/state.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/state.h:59, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/state.cpp:40: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/state.h:59, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/state.cpp:40: /usr/include/c++/9/bits/stl_vector.h: In function 'void init_gtc_state(t_state*, int, int, int)': /usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 957 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 957 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 957 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 957 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 957 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/inputrec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/helpformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/boxutilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/rstparser.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/helptopic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/partition.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc-simd.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/pbc-simd.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/pbc-simd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/random/seed.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/random/seed.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/seed.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/rmpbc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tabulatednormaldistribution.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/pbc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/mshift.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/helpwritercontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/forcetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/walltime_accounting.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/splineutil.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/splineutil.cpp: In function 'real gmx::internal::findSmallestQuotientOfFunctionAndSecondDerivative(gmx::ArrayRef, double, const std::pair&)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/splineutil.cpp:212:1: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 212 | findSmallestQuotientOfFunctionAndSecondDerivative(ArrayRef function, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/splineutil.cpp: In function 'real gmx::internal::findSmallestQuotientOfFunctionAndThirdDerivative(gmx::ArrayRef, double, const std::pair&)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/splineutil.cpp:290:1: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 290 | findSmallestQuotientOfFunctionAndThirdDerivative(ArrayRef function, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/splineutil.cpp: In function 'void gmx::internal::throwUnlessDerivativeIsConsistentWithFunction(gmx::ArrayRef, gmx::ArrayRef, double, const std::pair&)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/splineutil.cpp:112:1: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 112 | throwUnlessDerivativeIsConsistentWithFunction(ArrayRef function, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/splineutil.cpp:112:1: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/splineutil.cpp: In function 'std::vector gmx::internal::vectorSecondDerivative(gmx::ArrayRef, double)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/splineutil.cpp:309:1: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 309 | vectorSecondDerivative(ArrayRef f, double spacing) | ^~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/cubicsplinetable.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/cubicsplinetable.cpp: In constructor 'gmx::CubicSplineTable::CubicSplineTable(std::initializer_list, const std::pair&, real)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/cubicsplinetable.cpp:397:1: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 397 | CubicSplineTable::CubicSplineTable(std::initializer_list numericalInputList, | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/cubicsplinetable.cpp:397:1: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/wallcycle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/atomprop.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/quadraticsplinetable.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/quadraticsplinetable.cpp: In constructor 'gmx::QuadraticSplineTable::QuadraticSplineTable(std::initializer_list, const std::pair&, real)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/quadraticsplinetable.cpp:361:1: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 361 | QuadraticSplineTable::QuadraticSplineTable(std::initializer_list numericalInputList, | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/quadraticsplinetable.cpp:170:100: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 170 | std::vector thirdDerivative(internal::vectorSecondDerivative(derivative, inputSpacing)); | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atoms.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/atoms.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/atoms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/block.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/block.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/block.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/ifunc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/atomsbuilder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/forcefieldparameters.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/exclusionblocks.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/invblock.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/invblock.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/invblock.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/idef.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/idef.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/idef.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/residuetypes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/symtab.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/symtab.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/symtab.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/alignedallocator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/index.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/index.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/index.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/baseversion.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/topsort.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/topsort.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/topsort.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/basenetwork.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/topology.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/topology.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/topology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/compare.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/compare.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/compare.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/binaryinformation.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/binaryinformation.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/binaryinformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/coolstuff.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/errorcodes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/cstringutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o cd 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'/builddir/build/BUILD/gromacs-2019.6/mpich' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/mtop_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/fatalerror.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/datafilefinder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/directoryenumerator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/exceptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/gmxassert.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/filestream.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/filestream.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/filestream.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/futil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/futil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/futil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/gmxomp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/init.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/init.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/init.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/int64_to_int.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxregex.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/gmxregex.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/gmxregex.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/ikeyvaluetreeerror.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/inmemoryserializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/logger.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/logger.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/logger.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/messagestringcollector.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/messagestringcollector.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/messagestringcollector.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/keyvaluetree.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/loggerbuilder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/niceheader.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/pleasecite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/programcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/physicalnodecommunicator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/smalloc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/keyvaluetreeserializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/strdb.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/strdb.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/strdb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/path.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/path.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/path.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 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-grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/sysinfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/stringstream.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/txtdump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/textreader.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 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src/gromacs/CMakeFiles/libgromacs.dir/utility/variant.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/variant.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/variant.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/textwriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/stringutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/confio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/confio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/confio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/espio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/espio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/espio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/filetypes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/gmx_internal_xdr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/g96io.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/enxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio-xdr.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmxfio-xdr.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/gmxfio-xdr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/keyvaluetreetransform.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/gmxfio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/gmxfio.h:44, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/gmxfio.cpp:39: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {}; _Tp = gmx_file_position_t; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In function 'std::vector gmx_fio_get_output_file_positions()': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/md5.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/md5.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/md5.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/groio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/groio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/groio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/libxdrf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/mtxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/oenv.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/matio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/matio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/matio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/timecontrol.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/checkpoint.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/trrio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/pdbio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/warninp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/tngio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/trxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/writeps.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/xdrd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/xtcio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/xvgr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/readinp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/swap/swapcoords.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/output.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pulling/output.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/output.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/tpxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/essentialdynamics/edsam.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pullutil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pullutil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pullutil.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/stringutil.h:50, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/network.h:48, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pullutil.cpp:45: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/stringutil.h:50, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/network.h:48, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pullutil.cpp:45: /usr/include/c++/9/bits/stl_vector.h: In function 'void allocStatePrevStepPullCom(t_state*, pull_t*)': /usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 957 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pull.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pull.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pull.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/arrayref.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pull.h:58, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pull.cpp:39: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {t_pull_group&, gmx::LocalAtomSet, const bool&}; _Tp = pull_group_work_t; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {t_pull_coord&}; _Tp = pull_coord_work_t; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const t_pull_group&, const gmx::LocalAtomSet&, bool&}; _Tp = pull_group_work_t; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/include/c++/9/bits/vector.tcc: In function 'pull_t* init_pull(FILE*, const pull_params_t*, const t_inputrec*, const gmx_mtop_t*, const t_commrec*, gmx::LocalAtomSetManager*, real)': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pull.cpp:2259:1: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 2259 | } | ^ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pull.cpp:2259:1: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasparams.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasparams.h:53, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasparams.cpp:47: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In constructor 'gmx::BiasParams::BiasParams(const gmx::AwhParams&, const gmx::AwhBiasParams&, const std::vector&, double, double, gmx::BiasParams::DisableUpdateSkips, int, const std::vector&, int)': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/bias.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/bias.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp: In member function 'void gmx::Bias::updateForceCorrelationGrid(gmx::ArrayRef, double)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp:378:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 378 | void Bias::updateForceCorrelationGrid(gmx::ArrayRef probWeightNeighbor, | ^~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp:399:45: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 399 | state_.calcUmbrellaForceAndPotential(dimParams_, grid_, indexNeighbor, forceFromNeighbor); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp:70: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/correlationgrid.h:107:41: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 107 | tensors_[pointIndex].addData(weight, data, blockLengthMeasure == BlockLengthMeasure::Weight, t); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp: In member function 'gmx::ArrayRef gmx::Bias::calcForceAndUpdateBias(const double*, double*, double*, const t_commrec*, const gmx_multisim_t*, double, int64_t, int64_t, FILE*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp:144:39: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 144 | updateForceCorrelationGrid(probWeightNeighbor, t); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp:162:34: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 162 | state_.calcConvolvedForce(dimParams_, grid_, probWeightNeighbor, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 | tempForce_, biasForce_); | ~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp:162:34: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp:162:34: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp:162:34: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp:173:49: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 173 | state_.calcUmbrellaForceAndPotential(dimParams_, grid_, coordState.umbrellaGridpoint(), biasForce_); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp:182:54: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 182 | double newPotential = state_.moveUmbrella(dimParams_, grid_, probWeightNeighbor, biasForce_, step, seed, params_.biasIndex); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp:182:54: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp:182:54: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biassharing.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/biassharing.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biassharing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pull_rotation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/coordstate.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/coordstate.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/coordstate.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/coordstate.cpp: In member function 'void gmx::CoordState::sampleUmbrellaGridpoint(const gmx::Grid&, int, gmx::ArrayRef, int64_t, int64_t, int)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/coordstate.cpp:131:1: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 131 | CoordState::sampleUmbrellaGridpoint(const Grid &grid, | ^~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/awh.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/awh.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/awh.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/awh.h:69, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/awh.cpp:47: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double&, const double&, const double&}; _Tp = gmx::DimParams; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gmx::Bias, std::vector >&}; _Tp = gmx::BiasCoupledToSystem; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/include/c++/9/bits/vector.tcc: In constructor 'gmx::Awh::Awh(FILE*, const t_inputrec&, const t_commrec*, const gmx_multisim_t*, const gmx::AwhParams&, const string&, pull_t*)': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biaswriter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/biaswriter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biaswriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationtensor.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationtensor.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/correlationtensor.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/correlationtensor.cpp: In member function 'void gmx::CorrelationTensor::addData(double, gmx::ArrayRef, bool, double)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/correlationtensor.cpp:226:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 226 | void CorrelationTensor::addData(double weight, | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/correlationtensor.cpp:226:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/correlationtensor.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/correlationtensor.cpp:47: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {int&, double}; _Tp = gmx::CorrelationBlockData; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In constructor 'gmx::CorrelationTensor::CorrelationTensor(int, int, double)': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/correlationhistory.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationgrid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationgrid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/correlationgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/pointstate.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/pointstate.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/pointstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/histogramsize.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/histogramsize.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/histogramsize.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/histogramsize.cpp: In member function 'double gmx::HistogramSize::newHistogramSizeInitialStage(const gmx::BiasParams&, double, bool, gmx::ArrayRef, FILE*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/histogramsize.cpp:78:8: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 78 | double HistogramSize::newHistogramSizeInitialStage(const BiasParams ¶ms, | ^~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/histogramsize.cpp: In member function 'double gmx::HistogramSize::newHistogramSize(const gmx::BiasParams&, double, bool, const std::vector&, gmx::ArrayRef, FILE*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/histogramsize.cpp:210:8: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 210 | double HistogramSize::newHistogramSize(const BiasParams ¶ms, | ^~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/histogramsize.cpp:242:56: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 242 | newHistogramSize = newHistogramSizeInitialStage(params, t, covered, weightsumCovering, fplog); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/histogramsize.cpp:242:56: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/grid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/grid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/grid.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/dimparams.h:52, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/grid.h:60, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/grid.cpp:47: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double&, double&, double&, double&}; _Tp = gmx::GridAxis; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In constructor 'gmx::Grid::Grid(const std::vector&, const gmx::AwhDimParams*)': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&, const double&, double, int&}; _Tp = gmx::GridAxis; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In function 'void gmx::mapGridToDataGrid(std::vector*, const double* const*, int, const string&, const gmx::Grid&, const string&)': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/grid.cpp:830:1: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 830 | } | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/simd/support.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/simd/support.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/support.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/imd/imdsocket.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp: In function 'void gmx::{anonymous}::sumOverSimulations(gmx::ArrayRef, const t_commrec*, const gmx_multisim_t*) [with T = double]': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:128:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 128 | void sumOverSimulations(gmx::ArrayRef arrayRef, | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp: In function 'void gmx::{anonymous}::updateTargetDistribution(gmx::ArrayRef, const gmx::BiasParams&)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:293:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 293 | void updateTargetDistribution(gmx::ArrayRef pointState, | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp: In member function 'double gmx::BiasState::calcUmbrellaForceAndPotential(const std::vector&, const gmx::Grid&, int, gmx::ArrayRef) const': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:423:8: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 423 | double BiasState::calcUmbrellaForceAndPotential(const std::vector &dimParams, | ^~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp: In member function 'void gmx::BiasState::calcConvolvedForce(const std::vector&, const gmx::Grid&, gmx::ArrayRef, gmx::ArrayRef, gmx::ArrayRef) const': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:443:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 443 | void BiasState::calcConvolvedForce(const std::vector &dimParams, | ^~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:443:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:443:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:463:38: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 463 | calcUmbrellaForceAndPotential(dimParams, grid, indexNeighbor, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 | forceFromNeighbor); | ~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp: In member function 'double gmx::BiasState::moveUmbrella(const std::vector&, const gmx::Grid&, gmx::ArrayRef, gmx::ArrayRef, int64_t, int64_t, int)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:474:8: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 474 | double BiasState::moveUmbrella(const std::vector &dimParams, | ^~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:474:8: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:474:8: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:483:40: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 483 | coordState_.sampleUmbrellaGridpoint(grid, coordState_.gridpointIndex(), probWeightNeighbor, step, seed, indexSeed); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:483:40: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:487:38: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 487 | calcUmbrellaForceAndPotential(dimParams, grid, coordState_.umbrellaGridpoint(), newForce); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp: In member function 'void gmx::BiasState::sampleProbabilityWeights(const gmx::Grid&, gmx::ArrayRef)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:1231:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 1231 | void BiasState::sampleProbabilityWeights(const Grid &grid, | ^~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp: In member function 'void gmx::BiasState::sampleCoordAndPmf(const gmx::Grid&, gmx::ArrayRef, double)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:1286:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 1286 | void BiasState::sampleCoordAndPmf(const Grid &grid, | ^~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp: In member function 'void gmx::BiasState::updateFreeEnergyAndAddSamplesToHistogram(const std::vector&, const gmx::Grid&, const gmx::BiasParams&, const t_commrec*, const gmx_multisim_t*, double, int64_t, FILE*, std::vector*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:1074:62: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 1074 | double newHistogramSize = histogramSize_.newHistogramSize(params, t, detectedCovering, points_, weightSumCovering_, fplog); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:1074:62: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:1074:62: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:1074:62: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:1074:62: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:1074:62: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:1074:62: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:1074:62: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/conformation-utilities.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/conformation-utilities.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/conformation-utilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/read-params.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong 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-Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/imd/imd.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/imd/imd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/chargegroup.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem 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src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/network.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_generic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic_cg.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic_cg.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_generic_cg.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 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/builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nonbonded.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nonbonded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_free_energy.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/boxdeformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/calcmu.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/calcvir.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/checkpointhandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/compute_io.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/constraintrange.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/calc_verletbuf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/ebin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 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-grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/broadcaststructs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/gmx_omp_nthreads.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/force.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/force.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/force.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/groupcoord.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/coupling.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/expanded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/md_support.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdatoms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/lincs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/forcerec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdebin_bar.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdsetup.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdsetup.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdsetup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdoutf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdebin.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdebin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_atomdata.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_atomdata.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_atomdata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_grid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_grid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_grid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/membed.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nsgrid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nsgrid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nsgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/perf_est.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/qm_gamess.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_tuning.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_tuning.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_tuning.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/qm_mopac.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/qm_orca.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/qm_gaussian.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/rbin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qmmm.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qmmm.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/qmmm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/resethandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ns.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/ns.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/ns.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/rf_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sighandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/shake.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/simulationsignal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/settle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_search.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_search.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_search.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/stat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/splitter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shellfc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/shellfc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/shellfc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/stophandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/trajectory_writing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/tgroup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/vcm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/updategroupscog.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/updategroups.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/wall.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wnblist.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/wnblist.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/wnblist.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/update.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/update.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/disre.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/disre.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/disre.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/gpubonded-impl.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/gpubonded-impl.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/gpubonded-impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/listed-forces.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/listed-forces.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/listed-forces.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/listed-internal.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/listed-internal.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/listed-internal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/bonded.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/bonded.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/bonded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/vsite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied-forces/electricfield.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/applied-forces/electricfield.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/applied-forces/electricfield.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/manage-threading.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/manage-threading.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/manage-threading.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/pairs.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/pairs.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/pairs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/restcbt.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/restcbt.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/restcbt.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/position-restraints.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/position-restraints.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/position-restraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/orires.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/orires.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/orires.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald-utils.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/ewald-utils.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/ewald-utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/calculate-spline-moduli.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/calculate-spline-moduli.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/calculate-spline-moduli.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/ewald.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/long-range-correction.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/long-range-correction.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/long-range-correction.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-gather.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gather.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-gather.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-grid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-grid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-grid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-load-balancing.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-load-balancing.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-load-balancing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-pp.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-pp.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-pp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-spline-work.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-spline-work.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-spline-work.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-redistribute.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-redistribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-gpu-program.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gpu-program.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-gpu-program.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-gpu-program-impl.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gpu-program-impl.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-gpu-program-impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fft/calcgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-solve.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-solve.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-solve.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fft/fft.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-only.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-only.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-only.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-spread.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-spread.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-spread.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fft/parallel_3dfft.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/clfftinitializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fft/fft_fftw3.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/hostallocator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/gpu_hw_info.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/gpu_hw_info.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/gpu_hw_info.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fft/fft5d.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/gpu_utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/identifyavx512fmaunits.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/detecthardware.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/integrator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/integrator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/integrator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/printhardware.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/legacymdrunoptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/cpuinfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/logging.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/logging.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/logging.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/multisim.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/multisim.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/multisim.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/hardwaretopology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/replicaexchange.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/rerun.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/md.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/md.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/md.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/simulationcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/mimic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrunutility/handlerestart.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/minimize.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrunutility/threadaffinity.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/mdmodules.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrunutility/mdmodules.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrunutility/mdmodules.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/abstractsection.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/abstractsection.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/abstractsection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/behaviorcollection.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/behaviorcollection.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/behaviorcollection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/abstractoption.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/abstractoption.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/abstractoption.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/tpi.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/filenameoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/filenameoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/filenameoptionmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/runner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsection.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsection.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/optionsection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsvisitor.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsvisitor.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/optionsvisitor.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsassigner.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsassigner.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/optionsassigner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/options.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/options.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/options.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/filenameoption.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/filenameoption.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/filenameoption.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/timeunitmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/timeunitmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/timeunitmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/restraint/manager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/restraint/manager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/restraint/manager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/restraint/restraintmdmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/findallgputasks.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/findallgputasks.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/findallgputasks.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/decidegpuusage.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/decidegpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/decidegpuusage.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/reportgpuusage.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/reportgpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/reportgpuusage.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/treesupport.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/treesupport.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/treesupport.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/resourcedivision.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/resourcedivision.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/resourcedivision.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/taskassignment.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/taskassignment.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/taskassignment.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/usergpuids.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/usergpuids.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/usergpuids.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectory/trajectoryframe.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/utility/baseversion-gen.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectory/energyframe.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mimic/MimicUtils.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mimic/MimicUtils.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mimic/MimicUtils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mimic/MimicCommunicator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mimic/MimicCommunicator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mimic/MimicCommunicator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/hostallocator.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mimic/MimicCommunicator.h:39, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mimic/MimicCommunicator.cpp:37: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/basicoptions.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/basicoptions.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.h:50, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.cpp:44: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.h:50, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.cpp:44: /usr/include/c++/9/bits/stl_vector.h: In member function 'virtual void gmx::DoubleOptionStorage::processSetValues(gmx::OptionStorageTemplate::ValueList*)': /usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 957 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.h:50, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.cpp:44: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.h:50, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.cpp:44: /usr/include/c++/9/bits/stl_vector.h: In member function 'void gmx::OptionStorageTemplate::addValue(const T&) [with T = double]': /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h: In member function 'void gmx::OptionValueStoreVector::append(const T&) [with T = double]': /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h: In member function 'void gmx::OptionValueStoreNull::append(const T&) [with T = double]': /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.h:50, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.cpp:44: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.h:50, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.cpp:44: /usr/include/c++/9/bits/stl_vector.h: In member function 'void gmx::OptionStorageTemplate::addValue(const T&) [with T = long long int]': /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h: In member function 'void gmx::OptionValueStoreNull::append(const T&) [with T = long long int]': /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h: In member function 'void gmx::OptionValueStoreVector::append(const T&) [with T = long long int]': /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [100%] Linking CXX static library ../../lib/libgromacs_mdrun_mpich.a cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/cmake -P CMakeFiles/libgromacs.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/cmake -E cmake_link_script CMakeFiles/libgromacs.dir/link.txt --verbose=1 /usr/bin/ar qc 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CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.cpp.o /usr/bin/ranlib ../../lib/libgromacs_mdrun_mpich.a make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [100%] Built target libgromacs make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' cd /builddir/build/BUILD/gromacs-2019.6/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/programs /builddir/build/BUILD/gromacs-2019.6/mpich /builddir/build/BUILD/gromacs-2019.6/mpich/src/programs /builddir/build/BUILD/gromacs-2019.6/mpich/src/programs/CMakeFiles/mdrun.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/programs/CMakeFiles/mdrun.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/programs/CMakeFiles/mdrun.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/programs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/programs/CMakeFiles/mdrun.dir/depend.internal". Scanning dependencies of target mdrun make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [100%] Building CXX object src/programs/CMakeFiles/mdrun.dir/mdrun_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/mdrun.dir/mdrun_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun_main.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [100%] Linking CXX executable ../../bin/mdrun_mpich cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/programs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun.dir/link.txt --verbose=1 /usr/bin/c++ -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrun.dir/mdrun_main.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -o ../../bin/mdrun_mpich ../../lib/libgromacs_mdrun_mpich.a /usr/lib/mpich/lib/libmpi.so -fopenmp /usr/lib/libtng_io.so.1.8.2 /usr/lib/libhwloc.so -lrt /usr/lib/mpich/lib/libmpi.so /usr/lib/libfftw3f.so -lopenblas -lpthread -lm /usr/lib/liblmfit.so make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [100%] Built target mdrun make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019.6/mpich/CMakeFiles 0 + popd ~/build/BUILD/gromacs-2019.6 + test -n mpich + module unload mpi/mpich-arm ++ /usr/share/lmod/lmod/libexec/lmod sh unload mpi/mpich-arm + eval unset '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' unset 'LD_LIBRARY_PATH;' unset '__LMOD_REF_COUNT_LOADEDMODULES;' unset 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' unset 'MPI_BIN;' unset 'MPI_COMPILER;' unset 'MPI_FORTRAN_MOD_DIR;' unset 'MPI_HOME;' unset 'MPI_INCLUDE;' unset 'MPI_LIB;' unset 'MPI_MAN;' unset 'MPI_PYTHON2_SITEARCH;' unset 'MPI_PYTHON3_SITEARCH;' unset 'MPI_PYTHON_SITEARCH;' unset 'MPI_SUFFIX;' unset 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=:/usr/lib/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' unset '__LMOD_REF_COUNT__LMFILES_;' unset '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0=;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ unset __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ unset LD_LIBRARY_PATH ++ unset __LMOD_REF_COUNT_LOADEDMODULES ++ unset LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1 ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ unset MPI_BIN ++ unset MPI_COMPILER ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset MPI_INCLUDE ++ unset MPI_LIB ++ unset MPI_MAN ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_PYTHON_SITEARCH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=:/usr/lib/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset __LMOD_REF_COUNT__LMFILES_ ++ unset _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0= ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + for mpi in '' mpich openmpi + test -n openmpi + module load mpi/openmpi-arm ++ /usr/share/lmod/lmod/libexec/lmod sh load mpi/openmpi-arm + eval '__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib/openmpi/lib:1;' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH=/usr/lib/openmpi/lib;' export 'LD_LIBRARY_PATH;' '__LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-arm:1;' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES=mpi/openmpi-arm;' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/man/openmpi-arm:1\;/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=:/usr/share/man/openmpi-arm:/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' 'MPI_BIN=/usr/lib/openmpi/bin;' export 'MPI_BIN;' 'MPI_COMPILER=openmpi-arm;' export 'MPI_COMPILER;' 'MPI_FORTRAN_MOD_DIR=/usr/lib/gfortran/modules/openmpi;' export 'MPI_FORTRAN_MOD_DIR;' 'MPI_HOME=/usr/lib/openmpi;' export 'MPI_HOME;' 'MPI_INCLUDE=/usr/include/openmpi-arm;' export 'MPI_INCLUDE;' 'MPI_LIB=/usr/lib/openmpi/lib;' export 'MPI_LIB;' 'MPI_MAN=/usr/share/man/openmpi-arm;' export 'MPI_MAN;' 'MPI_PYTHON2_SITEARCH=/usr/lib/python2.7/site-packages/openmpi;' export 'MPI_PYTHON2_SITEARCH;' 'MPI_PYTHON3_SITEARCH=/usr/lib/python3.7/site-packages/openmpi;' export 'MPI_PYTHON3_SITEARCH;' 'MPI_PYTHON_SITEARCH=/usr/lib/python2.7/site-packages/openmpi;' export 'MPI_PYTHON_SITEARCH;' 'MPI_SUFFIX=_openmpi;' export 'MPI_SUFFIX;' 'MPI_SYSCONFIG=/etc/openmpi-arm;' export 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/lib/openmpi/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/lib/openmpi/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib/openmpi/lib/pkgconfig:1\;/usr/lib/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=/usr/lib/openmpi/lib/pkgconfig::/usr/lib/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' '__LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-arm:1;' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_=/usr/share/modulefiles/mpi/openmpi-arm;' export '_LMFILES_;' '_ModuleTable001_=X01vZHVsZVRhYmxlXz17WyJNVHZlcnNpb24iXT0zLFsiY19yZWJ1aWxkVGltZSJdPWZhbHNlLFsiY19zaG9ydFRpbWUiXT1mYWxzZSxkZXB0aFQ9e30sZmFtaWx5PXt9LG1UPXttcGk9e1siZm4iXT0iL3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9tcGkvb3Blbm1waS1hcm0iLFsiZnVsbE5hbWUiXT0ibXBpL29wZW5tcGktYXJtIixbImxvYWRPcmRlciJdPTEscHJvcFQ9e30sWyJzdGFja0RlcHRoIl09MCxbInN0YXR1cyJdPSJhY3RpdmUiLFsidXNlck5hbWUiXT0ibXBpL29wZW5tcGktYXJtIix9LH0sbXBhdGhBPXsiL2V0Yy9tb2R1bGVmaWxlcyIsIi91c3Ivc2hhcmUvbW9kdWxlZmlsZXMiLCIvdXNyL3NoYXJlL21vZHVsZWZpbGVzL0xpbnV4IiwiL3Vzci9zaGFyZS9tb2R1bGVm;' export '_ModuleTable001_;' '_ModuleTable002_=aWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib/openmpi/lib:1 ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ LD_LIBRARY_PATH=/usr/lib/openmpi/lib ++ export LD_LIBRARY_PATH ++ __LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-arm:1 ++ export __LMOD_REF_COUNT_LOADEDMODULES ++ LOADEDMODULES=mpi/openmpi-arm ++ export LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH='/usr/share/man/openmpi-arm:1;/usr/share/lmod/lmod/share/man:1' ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=:/usr/share/man/openmpi-arm:/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ MPI_BIN=/usr/lib/openmpi/bin ++ export MPI_BIN ++ MPI_COMPILER=openmpi-arm ++ export MPI_COMPILER ++ MPI_FORTRAN_MOD_DIR=/usr/lib/gfortran/modules/openmpi ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib/openmpi ++ export MPI_HOME ++ MPI_INCLUDE=/usr/include/openmpi-arm ++ export MPI_INCLUDE ++ MPI_LIB=/usr/lib/openmpi/lib ++ export MPI_LIB ++ MPI_MAN=/usr/share/man/openmpi-arm ++ export MPI_MAN ++ MPI_PYTHON2_SITEARCH=/usr/lib/python2.7/site-packages/openmpi ++ export MPI_PYTHON2_SITEARCH ++ MPI_PYTHON3_SITEARCH=/usr/lib/python3.7/site-packages/openmpi ++ export MPI_PYTHON3_SITEARCH ++ MPI_PYTHON_SITEARCH=/usr/lib/python2.7/site-packages/openmpi ++ export MPI_PYTHON_SITEARCH ++ MPI_SUFFIX=_openmpi ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/openmpi-arm ++ export MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/lib/openmpi/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/lib/openmpi/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ~/build/BUILD/gromacs-2019.6/openmpi ~/build/BUILD/gromacs-2019.6 ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib/openmpi/lib/pkgconfig:1;/usr/lib/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=/usr/lib/openmpi/lib/pkgconfig::/usr/lib/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ __LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-arm:1 ++ export __LMOD_REF_COUNT__LMFILES_ ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-arm ++ export _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=aWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ== ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + mkdir -p openmpi + pushd openmpi + test -z openmpi + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -I/usr/lib/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -I/usr/lib/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS ++ test -n openmpi ++ echo -DGMX_BUILD_MDRUN_ONLY:BOOL=ON -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_BINARY_SUFFIX=_openmpi -DGMX_LIBS_SUFFIX=_openmpi -DCMAKE_INSTALL_BINDIR=/usr/lib/openmpi/bin ++ test -n '' ++ echo + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_TESTING:BOOL=ON -DCMAKE_SKIP_RPATH:BOOL=ON -DCMAKE_SKIP_BUILD_RPATH:BOOL=ON -DGMX_BLAS_USER=openblas -DGMX_BUILD_UNITTESTS:BOOL=ON -DGMX_EXTERNAL_LMFIT:BOOL=ON -DGMX_USE_LMFIT=external -DGMX_EXTERNAL_TNG:BOOL=ON -DGMX_EXTERNAL_TINYXML2:BOOL=OFF -DGMX_LAPACK_USER=openblas -DGMX_USE_RDTSCP=OFF -DGMX_SIMD=None ' ' -DGMX_BUILD_MDRUN_ONLY:BOOL=ON -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_BINARY_SUFFIX=_openmpi -DGMX_LIBS_SUFFIX=_openmpi -DCMAKE_INSTALL_BINDIR=/usr/lib/openmpi/bin .. -- The C compiler identification is GNU 9.2.1 -- The CXX compiler identification is GNU 9.2.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Performing Test CXXFLAG_STD_CXX0X -- Performing Test CXXFLAG_STD_CXX0X - Success -- Performing Test CXX11_SUPPORTED -- Performing Test CXX11_SUPPORTED - Success -- Performing Test CXX11_STDLIB_PRESENT -- Performing Test CXX11_STDLIB_PRESENT - Success -- Looking for NVIDIA GPUs present in the system -- Could not detect NVIDIA GPUs -- No compatible CUDA toolkit found (v5.0+), disabling native GPU acceleration -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file regex.h -- Looking for include file regex.h - found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Looking for fedisableexcept in m -- Looking for fedisableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - not found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - not found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - not supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Check if the system is big endian -- Searching 16 bit integer -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- Found MPI_C: /usr/lib/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/openmpi/lib/libmpi_cxx.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Checking for MPI_IN_PLACE -- Performing Test MPI_IN_PLACE_COMPILE_OK -- Performing Test MPI_IN_PLACE_COMPILE_OK - Success -- Checking for MPI_IN_PLACE - yes -- hwloc version: -- Found Hwloc: /usr/lib/libhwloc.so (found suitable version "2.0.4", minimum required is "1.5") -- Looking for C++ include pthread.h -- Looking for C++ include pthread.h - found -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Detected build CPU vendor - ARM -- Detected build CPU brand - ARMv7 Processor rev 2 (v7l) -- Detected build CPU family - 7 -- Detected build CPU model - 3 -- Detected build CPU stepping - 2 -- Detected build CPU features - neon -- Disabling RDTSCP support -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present with _FILE_OFFSET_BITS=64 -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Looking for C++ include regex -- Looking for C++ include regex - found -- Checking for system XDR support -- Checking for system XDR support - not present -- SIMD instructions disabled -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- Checking for module 'fftw3f' -- Found fftw3f, version 3.3.8 -- Looking for fftwf_plan_many_dft in /usr/lib/libfftw3f.so -- Looking for fftwf_plan_many_dft in /usr/lib/libfftw3f.so - found -- Looking for fftwf_plan_many_dft_r2c in /usr/lib/libfftw3f.so -- Looking for fftwf_plan_many_dft_r2c in /usr/lib/libfftw3f.so - found -- Looking for fftwf_plan_many_dft_c2r in /usr/lib/libfftw3f.so -- Looking for fftwf_plan_many_dft_c2r in /usr/lib/libfftw3f.so - found -- Looking for fftwf_have_simd_sse in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_sse in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_sse in /usr/lib/libfftw3f.so -- Looking for fftwf_have_sse in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_sse2 in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_sse2 in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_sse2 in /usr/lib/libfftw3f.so -- Looking for fftwf_have_sse2 in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_avx in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx2 in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_avx2 in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx2_128 in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_avx2_128 in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx512 in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_avx512 in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx_128_fma in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_avx_128_fma in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx_512 in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_avx_512 in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_kcvi in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_kcvi in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_altivec in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_altivec in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_neon in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_neon in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_vsx in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_vsx in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_altivec in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_altivec in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_altivec in /usr/lib/libfftw3f.so -- Looking for fftwf_have_altivec in /usr/lib/libfftw3f.so - not found -- Using external FFT library - FFTW3 -- Checking that user BLAS library openblas works -- Looking for dgemm_ -- Looking for dgemm_ - found -- Checking that user LAPACK library openblas works -- Looking for cheev_ -- Looking for cheev_ - found -- Checking for dlopen -- Performing Test HAVE_DLOPEN -- Performing Test HAVE_DLOPEN - Success -- Checking for dlopen - found -- GROMACS only supports plugins in a build that uses shared libraries, which can be disabled for various reasons. BUILD_SHARED_LIBS=on and a toolchain that supports dynamic linking is required. (Hint: GMX_PREFER_STATIC_LIBS and GMX_BUILD_MDRUN_ONLY can influence the default BUILD_SHARED_LIBS, so if you need plugins, reconsider those choices.) -- Not using dynamic plugins (e.g VMD-supported file formats) -- Using manually set binary suffix: "_openmpi" -- Using manually set library suffix: "_openmpi" -- Performing Test HAS_NO_UNUSED_VARIABLE -- Performing Test HAS_NO_UNUSED_VARIABLE - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Performing Test HAS_NO_MISSING_DECL -- Performing Test HAS_NO_MISSING_DECL - Success -- Performing Test HAS_NO_MISSING_PROTO -- Performing Test HAS_NO_MISSING_PROTO - Failed -- Performing Test HAS_NO_MSVC_UNUSED -- Performing Test HAS_NO_MSVC_UNUSED - Failed -- Performing Test HAS_DECL_IN_SOURCE -- Performing Test HAS_DECL_IN_SOURCE - Failed -- Performing Test LMFIT_LINKS_OK -- Performing Test LMFIT_LINKS_OK - Success -- Found lmfit: /usr/include (found version "8.2") -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE GMX_EXTERNAL_LMFIT INCLUDE_INSTALL_DIR LIB_INSTALL_DIR SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/gromacs-2019.6/openmpi + /usr/bin/make -O -j5 V=1 VERBOSE=1 /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2019.6 -B/builddir/build/BUILD/gromacs-2019.6/openmpi --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019.6/openmpi/CMakeFiles /builddir/build/BUILD/gromacs-2019.6/openmpi/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' cd /builddir/build/BUILD/gromacs-2019.6/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/openmpi /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs/CMakeFiles/libgromacs_external.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs/CMakeFiles/libgromacs_external.dir/depend.internal". Scanning dependencies of target libgromacs_external make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' cd /builddir/build/BUILD/gromacs-2019.6/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/programs /builddir/build/BUILD/gromacs-2019.6/openmpi /builddir/build/BUILD/gromacs-2019.6/openmpi/src/programs /builddir/build/BUILD/gromacs-2019.6/openmpi/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/openmpi/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/openmpi/src/programs/CMakeFiles/mdrun_objlib.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/openmpi/src/programs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/openmpi/src/programs/CMakeFiles/mdrun_objlib.dir/depend.internal". Scanning dependencies of target mdrun_objlib make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' cd /builddir/build/BUILD/gromacs-2019.6/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/openmpi /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs/CMakeFiles/libgromacs_generated.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs/CMakeFiles/libgromacs_generated.dir/depend.internal". Scanning dependencies of target libgromacs_generated make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 0%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/eigensolver.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/eigensolver.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/eigensolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 0%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/matrix.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/matrix.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/matrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/nrjac.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/nrjac.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/nrjac.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/sparsematrix.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/sparsematrix.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/sparsematrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 1%] Building CXX object src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/mdrun.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 1%] Built target mdrun_objlib make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/errhandler.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/errhandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/tmpi_malloc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/atomic.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/atomic.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/atomic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/lock.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/lock.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/lock.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 3%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/pthreads.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/pthreads.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 3%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/system_error.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/system_error.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/system_error.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 3%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 3%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 3%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 3%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 0%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/gmx_arpack.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/gmx_arpack.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp In file included from /usr/include/string.h:495, from /usr/include/c++/9/cstring:42, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:41: In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2046:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2050:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2054:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2058:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2022:25: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2074:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2089:25: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4910:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4914:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4918:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4922:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_smake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' trncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4886:25: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4938:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4953:25: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dseupd_(int*, const char*, int*, double*, double*, int*, double*, const char*, int*, const char*, int*, double*, double*, int*, double*, int*, int*, int*, double*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2507:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dseupd_(int*, const char*, int*, double*, double*, int*, double*, const char*, int*, const char*, int*, double*, double*, int*, double*, int*, int*, int*, double*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2503:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dseupd_(int*, const char*, int*, double*, double*, int*, double*, const char*, int*, const char*, int*, double*, double*, int*, double*, int*, int*, int*, double*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2499:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dseupd_(int*, const char*, int*, double*, double*, int*, double*, const char*, int*, const char*, int*, double*, double*, int*, double*, int*, int*, int*, double*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2495:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void sseupd_(int*, const char*, int*, float*, float*, int*, float*, const char*, int*, const char*, int*, float*, float*, int*, float*, int*, int*, int*, float*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:5371:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void sseupd_(int*, const char*, int*, float*, float*, int*, float*, const char*, int*, const char*, int*, float*, float*, int*, float*, int*, int*, int*, float*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:5367:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void sseupd_(int*, const char*, int*, float*, float*, int*, float*, const char*, int*, const char*, int*, float*, float*, int*, float*, int*, int*, int*, float*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:5363:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void sseupd_(int*, const char*, int*, float*, float*, int*, float*, const char*, int*, const char*, int*, float*, float*, int*, float*, int*, int*, int*, float*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:5359:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 3%] Built target libgromacs_external make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 3%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 3%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 3%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 3%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 25%] Built target libgromacs_generated make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 25%] Generating baseversion-gen.cpp cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/builddir/build/BUILD/gromacs-2019.6/openmpi/VersionInfo.cmake -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/baseversion-gen.cpp.cmakein -D VERSION_OUT=utility/baseversion-gen.cpp -D GMX_SOURCE_DOI=10.5281/zenodo.3685922 -P /builddir/build/BUILD/gromacs-2019.6/cmake/gmxConfigureVersionInfo.cmake cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/cmake -E touch utility/baseversion-gen.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' cd /builddir/build/BUILD/gromacs-2019.6/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/openmpi /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs/CMakeFiles/libgromacs.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs/CMakeFiles/libgromacs.dir/depend.internal". Scanning dependencies of target libgromacs make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlinemodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlinehelpcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlineinit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlinehelpwriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlineoptionsmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlineparser.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/filenm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlinemodulemanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlineprogramcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlinehelpmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/viewit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/shellcompletions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/atomdistribution.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/box.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/box.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/box.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/pargs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/dlb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/dlbtiming.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/collect.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/collect.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/collect.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/cellsizes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_network.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_setup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/distribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_constraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_specatomcomm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_vsite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/localatomset.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/ga2la.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/dump.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/dump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/localatomsetdata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/localatomsetmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/utility.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/utility.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/3dtransforms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/do_fit.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/do_fit.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/do_fit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/functions.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/functions.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/functions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/units.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/units.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/units.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/redistribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_topology.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_topology.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_topology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/invertmatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/utilities.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/utilities.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/utilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/veccompare.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/veccompare.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/veccompare.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/vecdump.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/vecdump.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/vecdump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/md_enums.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/iforceprovider.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/df_history.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/observableshistory.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/inputrec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/helpmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/state.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/state.h:59, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/state.cpp:40: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/state.h:59, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/state.cpp:40: /usr/include/c++/9/bits/stl_vector.h: In function 'void init_gtc_state(t_state*, int, int, int)': /usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 957 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 957 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 957 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 957 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 957 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/helpformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/helptopic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/boxutilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/rstparser.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/partition.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc-simd.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/pbc-simd.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/pbc-simd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/random/seed.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/random/seed.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/seed.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/rmpbc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tabulatednormaldistribution.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/helpwritercontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/pbc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/mshift.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/forcetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/walltime_accounting.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/cubicsplinetable.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/cubicsplinetable.cpp: In constructor 'gmx::CubicSplineTable::CubicSplineTable(std::initializer_list, const std::pair&, real)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/cubicsplinetable.cpp:397:1: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 397 | CubicSplineTable::CubicSplineTable(std::initializer_list numericalInputList, | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/cubicsplinetable.cpp:397:1: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/splineutil.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/splineutil.cpp: In function 'real gmx::internal::findSmallestQuotientOfFunctionAndSecondDerivative(gmx::ArrayRef, double, const std::pair&)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/splineutil.cpp:212:1: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 212 | findSmallestQuotientOfFunctionAndSecondDerivative(ArrayRef function, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/splineutil.cpp: In function 'real gmx::internal::findSmallestQuotientOfFunctionAndThirdDerivative(gmx::ArrayRef, double, const std::pair&)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/splineutil.cpp:290:1: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 290 | findSmallestQuotientOfFunctionAndThirdDerivative(ArrayRef function, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/splineutil.cpp: In function 'void gmx::internal::throwUnlessDerivativeIsConsistentWithFunction(gmx::ArrayRef, gmx::ArrayRef, double, const std::pair&)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/splineutil.cpp:112:1: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 112 | throwUnlessDerivativeIsConsistentWithFunction(ArrayRef function, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/splineutil.cpp:112:1: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/splineutil.cpp: In function 'std::vector gmx::internal::vectorSecondDerivative(gmx::ArrayRef, double)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/splineutil.cpp:309:1: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 309 | vectorSecondDerivative(ArrayRef f, double spacing) | ^~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/wallcycle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/atomprop.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/block.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/block.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/block.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atoms.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/atoms.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/atoms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/quadraticsplinetable.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/quadraticsplinetable.cpp: In constructor 'gmx::QuadraticSplineTable::QuadraticSplineTable(std::initializer_list, const std::pair&, real)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/quadraticsplinetable.cpp:361:1: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 361 | QuadraticSplineTable::QuadraticSplineTable(std::initializer_list numericalInputList, | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/quadraticsplinetable.cpp:170:100: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 170 | std::vector thirdDerivative(internal::vectorSecondDerivative(derivative, inputSpacing)); | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/ifunc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/atomsbuilder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/forcefieldparameters.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/exclusionblocks.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/invblock.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/invblock.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/invblock.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/idef.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/idef.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/idef.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/residuetypes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/symtab.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/symtab.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/symtab.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/index.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/index.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/index.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/alignedallocator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/baseversion.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/topsort.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/topsort.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/topsort.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/basenetwork.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/topology.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/topology.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/topology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/compare.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/compare.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/compare.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/binaryinformation.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/binaryinformation.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/binaryinformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/coolstuff.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/errorcodes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/cstringutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/errorformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/mtop_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/fileredirector.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/fatalerror.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/directoryenumerator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/datafilefinder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/gmxassert.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && 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src/gromacs/CMakeFiles/libgromacs.dir/utility/futil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/futil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/futil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/filestream.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/filestream.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/filestream.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/gmxomp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/init.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/init.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/init.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxregex.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/gmxregex.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/gmxregex.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/int64_to_int.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/ikeyvaluetreeerror.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/logger.cpp.o cd 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'/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/inmemoryserializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/messagestringcollector.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/messagestringcollector.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/messagestringcollector.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/keyvaluetree.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/loggerbuilder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/niceheader.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/pleasecite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/programcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/physicalnodecommunicator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/smalloc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/keyvaluetreeserializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/strdb.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/strdb.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/strdb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/path.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/path.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/path.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/strconvert.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/stringstream.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/sysinfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/txtdump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/textreader.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/textreader.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/textreader.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/variant.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/variant.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/variant.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/textwriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/stringutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/confio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/confio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/confio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o -c 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-funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/espio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/espio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/gmx_internal_xdr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/g96io.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio-xdr.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmxfio-xdr.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/gmxfio-xdr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/keyvaluetreetransform.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/enxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/gmxfio.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/gmxfio.h:44, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/gmxfio.cpp:39: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {}; _Tp = gmx_file_position_t; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In function 'std::vector gmx_fio_get_output_file_positions()': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/md5.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/md5.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/md5.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/groio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/groio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/groio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/libxdrf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/mtxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/oenv.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/matio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/matio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/matio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/timecontrol.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/checkpoint.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/pdbio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o cd 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'/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/warninp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/tngio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/xdrd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/trxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/writeps.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/xtcio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/xvgr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/readinp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/swap/swapcoords.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/output.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pulling/output.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/output.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/tpxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/essentialdynamics/edsam.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pull.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pull.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pull.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/arrayref.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pull.h:58, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pull.cpp:39: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {t_pull_group&, gmx::LocalAtomSet, const bool&}; _Tp = pull_group_work_t; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {t_pull_coord&}; _Tp = pull_coord_work_t; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const t_pull_group&, const gmx::LocalAtomSet&, bool&}; _Tp = pull_group_work_t; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/include/c++/9/bits/vector.tcc: In function 'pull_t* init_pull(FILE*, const pull_params_t*, const t_inputrec*, const gmx_mtop_t*, const t_commrec*, gmx::LocalAtomSetManager*, real)': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pull.cpp:2259:1: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 2259 | } | ^ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pull.cpp:2259:1: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pullutil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pullutil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pullutil.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/stringutil.h:50, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/network.h:48, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pullutil.cpp:45: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/stringutil.h:50, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/network.h:48, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pullutil.cpp:45: /usr/include/c++/9/bits/stl_vector.h: In function 'void allocStatePrevStepPullCom(t_state*, pull_t*)': /usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 957 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasparams.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasparams.h:53, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasparams.cpp:47: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In constructor 'gmx::BiasParams::BiasParams(const gmx::AwhParams&, const gmx::AwhBiasParams&, const std::vector&, double, double, gmx::BiasParams::DisableUpdateSkips, int, const std::vector&, int)': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biassharing.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/biassharing.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biassharing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/bias.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/bias.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp: In member function 'void gmx::Bias::updateForceCorrelationGrid(gmx::ArrayRef, double)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp:378:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 378 | void Bias::updateForceCorrelationGrid(gmx::ArrayRef probWeightNeighbor, | ^~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp:399:45: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 399 | state_.calcUmbrellaForceAndPotential(dimParams_, grid_, indexNeighbor, forceFromNeighbor); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp:70: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/correlationgrid.h:107:41: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 107 | tensors_[pointIndex].addData(weight, data, blockLengthMeasure == BlockLengthMeasure::Weight, t); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp: In member function 'gmx::ArrayRef gmx::Bias::calcForceAndUpdateBias(const double*, double*, double*, const t_commrec*, const gmx_multisim_t*, double, int64_t, int64_t, FILE*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp:144:39: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 144 | updateForceCorrelationGrid(probWeightNeighbor, t); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp:162:34: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 162 | state_.calcConvolvedForce(dimParams_, grid_, probWeightNeighbor, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 | tempForce_, biasForce_); | ~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp:162:34: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp:162:34: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp:162:34: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp:173:49: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 173 | state_.calcUmbrellaForceAndPotential(dimParams_, grid_, coordState.umbrellaGridpoint(), biasForce_); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp:182:54: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 182 | double newPotential = state_.moveUmbrella(dimParams_, grid_, probWeightNeighbor, biasForce_, step, seed, params_.biasIndex); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp:182:54: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp:182:54: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pull_rotation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/awh.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/awh.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/awh.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/awh.h:69, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/awh.cpp:47: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double&, const double&, const double&}; _Tp = gmx::DimParams; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gmx::Bias, std::vector >&}; _Tp = gmx::BiasCoupledToSystem; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/include/c++/9/bits/vector.tcc: In constructor 'gmx::Awh::Awh(FILE*, const t_inputrec&, const t_commrec*, const gmx_multisim_t*, const gmx::AwhParams&, const string&, pull_t*)': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/coordstate.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/coordstate.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/coordstate.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/coordstate.cpp: In member function 'void gmx::CoordState::sampleUmbrellaGridpoint(const gmx::Grid&, int, gmx::ArrayRef, int64_t, int64_t, int)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/coordstate.cpp:131:1: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 131 | CoordState::sampleUmbrellaGridpoint(const Grid &grid, | ^~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biaswriter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/biaswriter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biaswriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationtensor.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationtensor.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/correlationtensor.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/correlationtensor.cpp: In member function 'void gmx::CorrelationTensor::addData(double, gmx::ArrayRef, bool, double)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/correlationtensor.cpp:226:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 226 | void CorrelationTensor::addData(double weight, | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/correlationtensor.cpp:226:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/correlationtensor.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/correlationtensor.cpp:47: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {int&, double}; _Tp = gmx::CorrelationBlockData; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In constructor 'gmx::CorrelationTensor::CorrelationTensor(int, int, double)': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationgrid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationgrid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/correlationgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/correlationhistory.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/pointstate.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/pointstate.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/pointstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/histogramsize.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/histogramsize.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/histogramsize.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/histogramsize.cpp: In member function 'double gmx::HistogramSize::newHistogramSizeInitialStage(const gmx::BiasParams&, double, bool, gmx::ArrayRef, FILE*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/histogramsize.cpp:78:8: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 78 | double HistogramSize::newHistogramSizeInitialStage(const BiasParams ¶ms, | ^~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/histogramsize.cpp: In member function 'double gmx::HistogramSize::newHistogramSize(const gmx::BiasParams&, double, bool, const std::vector&, gmx::ArrayRef, FILE*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/histogramsize.cpp:210:8: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 210 | double HistogramSize::newHistogramSize(const BiasParams ¶ms, | ^~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/histogramsize.cpp:242:56: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 242 | newHistogramSize = newHistogramSizeInitialStage(params, t, covered, weightsumCovering, fplog); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/histogramsize.cpp:242:56: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/grid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/grid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/grid.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/dimparams.h:52, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/grid.h:60, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/grid.cpp:47: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double&, double&, double&, double&}; _Tp = gmx::GridAxis; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In constructor 'gmx::Grid::Grid(const std::vector&, const gmx::AwhDimParams*)': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&, const double&, double, int&}; _Tp = gmx::GridAxis; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In function 'void gmx::mapGridToDataGrid(std::vector*, const double* const*, int, const string&, const gmx::Grid&, const string&)': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/grid.cpp:830:1: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 830 | } | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/simd/support.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/simd/support.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/support.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp: In function 'void gmx::{anonymous}::sumOverSimulations(gmx::ArrayRef, const t_commrec*, const gmx_multisim_t*) [with T = double]': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:128:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 128 | void sumOverSimulations(gmx::ArrayRef arrayRef, | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp: In function 'void gmx::{anonymous}::updateTargetDistribution(gmx::ArrayRef, const gmx::BiasParams&)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:293:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 293 | void updateTargetDistribution(gmx::ArrayRef pointState, | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp: In member function 'double gmx::BiasState::calcUmbrellaForceAndPotential(const std::vector&, const gmx::Grid&, int, gmx::ArrayRef) const': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:423:8: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 423 | double BiasState::calcUmbrellaForceAndPotential(const std::vector &dimParams, | ^~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp: In member function 'void gmx::BiasState::calcConvolvedForce(const std::vector&, const gmx::Grid&, gmx::ArrayRef, gmx::ArrayRef, gmx::ArrayRef) const': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:443:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 443 | void BiasState::calcConvolvedForce(const std::vector &dimParams, | ^~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:443:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:443:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:463:38: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 463 | calcUmbrellaForceAndPotential(dimParams, grid, indexNeighbor, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 | forceFromNeighbor); | ~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp: In member function 'double gmx::BiasState::moveUmbrella(const std::vector&, const gmx::Grid&, gmx::ArrayRef, gmx::ArrayRef, int64_t, int64_t, int)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:474:8: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 474 | double BiasState::moveUmbrella(const std::vector &dimParams, | ^~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:474:8: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:474:8: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:483:40: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 483 | coordState_.sampleUmbrellaGridpoint(grid, coordState_.gridpointIndex(), probWeightNeighbor, step, seed, indexSeed); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:483:40: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:487:38: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 487 | calcUmbrellaForceAndPotential(dimParams, grid, coordState_.umbrellaGridpoint(), newForce); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp: In member function 'void gmx::BiasState::sampleProbabilityWeights(const gmx::Grid&, gmx::ArrayRef)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:1231:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 1231 | void BiasState::sampleProbabilityWeights(const Grid &grid, | ^~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp: In member function 'void gmx::BiasState::sampleCoordAndPmf(const gmx::Grid&, gmx::ArrayRef, double)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:1286:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 1286 | void BiasState::sampleCoordAndPmf(const Grid &grid, | ^~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp: In member function 'void gmx::BiasState::updateFreeEnergyAndAddSamplesToHistogram(const std::vector&, const gmx::Grid&, const gmx::BiasParams&, const t_commrec*, const gmx_multisim_t*, double, int64_t, FILE*, std::vector*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:1074:62: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 1074 | double newHistogramSize = histogramSize_.newHistogramSize(params, t, detectedCovering, points_, weightSumCovering_, fplog); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:1074:62: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:1074:62: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:1074:62: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:1074:62: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:1074:62: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:1074:62: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:1074:62: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/imd/imdsocket.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/conformation-utilities.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 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-I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_free_energy.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o cd 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'/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/calcmu.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/calcvir.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/checkpointhandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/compute_io.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/constraintrange.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/calc_verletbuf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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'/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/broadcaststructs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/gmx_omp_nthreads.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/force.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/force.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/force.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/coupling.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/groupcoord.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/expanded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/md_support.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdatoms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/lincs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/forcerec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdebin_bar.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdsetup.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdsetup.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdsetup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdoutf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdebin.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdebin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_atomdata.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_atomdata.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_atomdata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_grid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_grid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_grid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/membed.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/perf_est.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nsgrid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nsgrid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nsgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_tuning.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_tuning.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_tuning.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/qm_gamess.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/qm_mopac.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/qm_orca.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/qm_gaussian.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/rbin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qmmm.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qmmm.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/qmmm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ns.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/ns.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/ns.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/resethandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/rf_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sighandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/shake.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/settle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/simulationsignal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/splitter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_search.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_search.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_search.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shellfc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/shellfc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/shellfc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/stat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/stophandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/tgroup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/trajectory_writing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/vcm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/updategroupscog.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/updategroups.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/wall.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wnblist.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/wnblist.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/wnblist.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/update.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/update.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/disre.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/disre.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/disre.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/gpubonded-impl.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/gpubonded-impl.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/gpubonded-impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/listed-internal.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/listed-internal.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/listed-internal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/listed-forces.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/listed-forces.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/listed-forces.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/bonded.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/bonded.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/bonded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/vsite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied-forces/electricfield.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/applied-forces/electricfield.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/applied-forces/electricfield.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/manage-threading.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/manage-threading.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/manage-threading.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/pairs.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/pairs.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/pairs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/restcbt.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/restcbt.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/restcbt.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/orires.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/orires.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/orires.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/position-restraints.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/position-restraints.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/position-restraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald-utils.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/ewald-utils.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/ewald-utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/calculate-spline-moduli.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/calculate-spline-moduli.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/calculate-spline-moduli.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/ewald.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/long-range-correction.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/long-range-correction.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/long-range-correction.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-gather.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gather.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-gather.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-grid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-grid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-grid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-load-balancing.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-load-balancing.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-load-balancing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-pp.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-pp.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-pp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-redistribute.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-redistribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-spline-work.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-spline-work.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-spline-work.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-gpu-program.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gpu-program.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-gpu-program.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-gpu-program-impl.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gpu-program-impl.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-gpu-program-impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fft/fft.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-solve.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-solve.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-solve.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fft/calcgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-only.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-only.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-only.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fft/parallel_3dfft.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/clfftinitializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fft/fft_fftw3.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-spread.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-spread.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-spread.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/hostallocator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/gpu_hw_info.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/gpu_hw_info.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/gpu_hw_info.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/gpu_utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fft/fft5d.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/identifyavx512fmaunits.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/detecthardware.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/integrator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/integrator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/integrator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/printhardware.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/legacymdrunoptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/cpuinfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/logging.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/logging.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/logging.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/multisim.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/multisim.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/multisim.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/hardwaretopology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/replicaexchange.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/rerun.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/simulationcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/md.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/md.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/md.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/mimic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 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-Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/minimize.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrunutility/threadaffinity.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/mdmodules.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrunutility/mdmodules.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrunutility/mdmodules.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/abstractsection.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/abstractsection.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/abstractsection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/behaviorcollection.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/behaviorcollection.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/behaviorcollection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/abstractoption.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/abstractoption.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/abstractoption.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/tpi.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/filenameoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/filenameoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/filenameoptionmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/runner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsection.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsection.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/optionsection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsvisitor.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsvisitor.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/optionsvisitor.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsassigner.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsassigner.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/optionsassigner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/filenameoption.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/filenameoption.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/filenameoption.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/options.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/options.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/options.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/timeunitmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/timeunitmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/timeunitmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/restraint/manager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/restraint/manager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/restraint/manager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/restraint/restraintmdmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/findallgputasks.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/findallgputasks.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/findallgputasks.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/decidegpuusage.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/decidegpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/decidegpuusage.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/reportgpuusage.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/reportgpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/reportgpuusage.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/treesupport.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/treesupport.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/treesupport.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/resourcedivision.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/resourcedivision.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/resourcedivision.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/usergpuids.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/usergpuids.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/usergpuids.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/taskassignment.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/taskassignment.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/taskassignment.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectory/trajectoryframe.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectory/energyframe.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs/utility/baseversion-gen.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mimic/MimicUtils.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mimic/MimicUtils.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mimic/MimicUtils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mimic/MimicCommunicator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mimic/MimicCommunicator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mimic/MimicCommunicator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/hostallocator.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mimic/MimicCommunicator.h:39, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mimic/MimicCommunicator.cpp:37: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/basicoptions.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/basicoptions.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.h:50, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.cpp:44: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.h:50, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.cpp:44: /usr/include/c++/9/bits/stl_vector.h: In member function 'virtual void gmx::DoubleOptionStorage::processSetValues(gmx::OptionStorageTemplate::ValueList*)': /usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 957 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.h:50, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.cpp:44: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.h:50, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.cpp:44: /usr/include/c++/9/bits/stl_vector.h: In member function 'void gmx::OptionStorageTemplate::addValue(const T&) [with T = double]': /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h: In member function 'void gmx::OptionValueStoreVector::append(const T&) [with T = double]': /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h: In member function 'void gmx::OptionValueStoreNull::append(const T&) [with T = double]': /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.h:50, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.cpp:44: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.h:50, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.cpp:44: /usr/include/c++/9/bits/stl_vector.h: In member function 'void gmx::OptionStorageTemplate::addValue(const T&) [with T = long long int]': /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h: In member function 'void gmx::OptionValueStoreNull::append(const T&) [with T = long long int]': /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h: In member function 'void gmx::OptionValueStoreVector::append(const T&) [with T = long long int]': /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [100%] Linking CXX static library ../../lib/libgromacs_mdrun_openmpi.a cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/cmake -P CMakeFiles/libgromacs.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/cmake -E cmake_link_script CMakeFiles/libgromacs.dir/link.txt --verbose=1 /usr/bin/ar qc 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CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.cpp.o /usr/bin/ranlib ../../lib/libgromacs_mdrun_openmpi.a make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [100%] Built target libgromacs make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' cd /builddir/build/BUILD/gromacs-2019.6/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/programs /builddir/build/BUILD/gromacs-2019.6/openmpi /builddir/build/BUILD/gromacs-2019.6/openmpi/src/programs /builddir/build/BUILD/gromacs-2019.6/openmpi/src/programs/CMakeFiles/mdrun.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/openmpi/src/programs/CMakeFiles/mdrun.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/openmpi/src/programs/CMakeFiles/mdrun.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/openmpi/src/programs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/openmpi/src/programs/CMakeFiles/mdrun.dir/depend.internal". Scanning dependencies of target mdrun make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [100%] Building CXX object src/programs/CMakeFiles/mdrun.dir/mdrun_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/mdrun.dir/mdrun_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun_main.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [100%] Linking CXX executable ../../bin/mdrun_openmpi cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/programs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun.dir/link.txt --verbose=1 /usr/bin/c++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrun.dir/mdrun_main.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -o ../../bin/mdrun_openmpi ../../lib/libgromacs_mdrun_openmpi.a /usr/lib/openmpi/lib/libmpi.so -fopenmp /usr/lib/libtng_io.so.1.8.2 /usr/lib/libhwloc.so -lrt /usr/lib/openmpi/lib/libmpi.so /usr/lib/libfftw3f.so -lopenblas -lpthread -lm /usr/lib/liblmfit.so make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [100%] Built target mdrun make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019.6/openmpi/CMakeFiles 0 + popd ~/build/BUILD/gromacs-2019.6 + test -n openmpi + module unload mpi/openmpi-arm ++ /usr/share/lmod/lmod/libexec/lmod sh unload mpi/openmpi-arm + eval unset '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' unset 'LD_LIBRARY_PATH;' unset '__LMOD_REF_COUNT_LOADEDMODULES;' unset 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' unset 'MPI_BIN;' unset 'MPI_COMPILER;' unset 'MPI_FORTRAN_MOD_DIR;' unset 'MPI_HOME;' unset 'MPI_INCLUDE;' unset 'MPI_LIB;' unset 'MPI_MAN;' unset 'MPI_PYTHON2_SITEARCH;' unset 'MPI_PYTHON3_SITEARCH;' unset 'MPI_PYTHON_SITEARCH;' unset 'MPI_SUFFIX;' unset 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=:/usr/lib/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' unset '__LMOD_REF_COUNT__LMFILES_;' unset '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0=;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ unset __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ unset LD_LIBRARY_PATH ++ unset __LMOD_REF_COUNT_LOADEDMODULES ++ unset LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1 ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ unset MPI_BIN ++ unset MPI_COMPILER ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset MPI_INCLUDE ++ unset MPI_LIB ++ unset MPI_MAN ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_PYTHON_SITEARCH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ~/build/BUILD/gromacs-2019.6/serial_d ~/build/BUILD/gromacs-2019.6 ++ PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=:/usr/lib/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset __LMOD_REF_COUNT__LMFILES_ ++ unset _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0= ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + for p in '' _d + for mpi in '' mpich openmpi + test -n '' + mkdir -p serial_d + pushd serial_d + test -z '' + cp -al ../regressiontests-2019.6 tests/ + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -I/usr/lib/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -I/usr/lib/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS ++ test -n '' ++ echo -DGMX_X11=ON ++ test -n _d ++ echo -DGMX_DOUBLE:BOOL=ON + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_TESTING:BOOL=ON -DCMAKE_SKIP_RPATH:BOOL=ON -DCMAKE_SKIP_BUILD_RPATH:BOOL=ON -DGMX_BLAS_USER=openblas -DGMX_BUILD_UNITTESTS:BOOL=ON -DGMX_EXTERNAL_LMFIT:BOOL=ON -DGMX_USE_LMFIT=external -DGMX_EXTERNAL_TNG:BOOL=ON -DGMX_EXTERNAL_TINYXML2:BOOL=OFF -DGMX_LAPACK_USER=openblas -DGMX_USE_RDTSCP=OFF -DGMX_SIMD=None ' ' -DGMX_X11=ON -DGMX_DOUBLE:BOOL=ON .. -- The C compiler identification is GNU 9.2.1 -- The CXX compiler identification is GNU 9.2.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Performing Test CXXFLAG_STD_CXX0X -- Performing Test CXXFLAG_STD_CXX0X - Success -- Performing Test CXX11_SUPPORTED -- Performing Test CXX11_SUPPORTED - Success -- Performing Test CXX11_STDLIB_PRESENT -- Performing Test CXX11_STDLIB_PRESENT - Success CMake Warning at cmake/gmxManageGPU.cmake:53 (message): GPU acceleration is not available in double precision, disabled! Call Stack (most recent call first): CMakeLists.txt:226 (include) -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file regex.h -- Looking for include file regex.h - found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Looking for fedisableexcept in m -- Looking for fedisableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - not found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - not found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - not supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Check if the system is big endian -- Searching 16 bit integer -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- hwloc version: -- Found Hwloc: /usr/lib/libhwloc.so (found suitable version "2.0.4", minimum required is "1.5") -- Found X11: /usr/include -- Looking for XOpenDisplay in /usr/lib/libX11.so -- Looking for XOpenDisplay in /usr/lib/libX11.so - found -- Looking for gethostbyname -- Looking for gethostbyname - found -- Looking for connect -- Looking for connect - found -- Looking for remove -- Looking for remove - found -- Looking for shmat -- Looking for shmat - found -- Looking for C++ include pthread.h -- Looking for C++ include pthread.h - found -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Detected build CPU vendor - ARM -- Detected build CPU brand - ARMv7 Processor rev 2 (v7l) -- Detected build CPU family - 7 -- Detected build CPU model - 3 -- Detected build CPU stepping - 2 -- Detected build CPU features - neon -- Disabling RDTSCP support -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present with _FILE_OFFSET_BITS=64 -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Looking for C++ include regex -- Looking for C++ include regex - found -- Checking for system XDR support -- Checking for system XDR support - not present -- SIMD instructions disabled -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- Checking for module 'fftw3' -- Found fftw3, version 3.3.8 -- Looking for fftw_plan_many_dft in /usr/lib/libfftw3.so -- Looking for fftw_plan_many_dft in /usr/lib/libfftw3.so - found -- Looking for fftw_plan_many_dft_r2c in /usr/lib/libfftw3.so -- Looking for fftw_plan_many_dft_r2c in /usr/lib/libfftw3.so - found -- Looking for fftw_plan_many_dft_c2r in /usr/lib/libfftw3.so -- Looking for fftw_plan_many_dft_c2r in /usr/lib/libfftw3.so - found -- Looking for fftw_have_simd_sse in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_sse in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_sse in /usr/lib/libfftw3.so -- Looking for fftw_have_sse in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_simd_sse2 in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_sse2 in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_sse2 in /usr/lib/libfftw3.so -- Looking for fftw_have_sse2 in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_simd_avx in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_avx in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_simd_avx2 in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_avx2 in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_simd_avx2_128 in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_avx2_128 in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_simd_avx512 in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_avx512 in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_simd_avx_128_fma in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_avx_128_fma in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_simd_avx_512 in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_avx_512 in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_simd_kcvi in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_kcvi in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_simd_altivec in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_altivec in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_simd_neon in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_neon in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_simd_vsx in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_vsx in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_simd_altivec in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_altivec in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_altivec in /usr/lib/libfftw3.so -- Looking for fftw_have_altivec in /usr/lib/libfftw3.so - not found -- Using external FFT library - FFTW3 -- Checking that user BLAS library openblas works -- Looking for dgemm_ -- Looking for dgemm_ - found -- Checking that user LAPACK library openblas works -- Looking for cheev_ -- Looking for cheev_ - found -- Checking for dlopen -- Performing Test HAVE_DLOPEN -- Performing Test HAVE_DLOPEN - Success -- Checking for dlopen - found -- Using dynamic plugins (e.g VMD-supported file formats) -- Checking for suitable VMD version -- VMD plugins not found. Path to VMD can be set with VMDDIR. -- Using default binary suffix: "_d" -- Using default library suffix: "_d" -- Could not convert sample image, ImageMagick convert can not be used -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Can not build documentation with Python 3 -- Performing Test HAS_NO_UNUSED_VARIABLE -- Performing Test HAS_NO_UNUSED_VARIABLE - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Performing Test HAS_NO_MISSING_DECL -- Performing Test HAS_NO_MISSING_DECL - Success -- Performing Test HAS_NO_MISSING_PROTO -- Performing Test HAS_NO_MISSING_PROTO - Failed -- Performing Test HAS_NO_MSVC_UNUSED -- Performing Test HAS_NO_MSVC_UNUSED - Failed -- Performing Test HAS_DECL_IN_SOURCE -- Performing Test HAS_DECL_IN_SOURCE - Failed -- Performing Test LMFIT_LINKS_OK -- Performing Test LMFIT_LINKS_OK - Success -- Found lmfit: /usr/include (found version "8.2") -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE GMX_EXTERNAL_LMFIT INCLUDE_INSTALL_DIR LIB_INSTALL_DIR SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/gromacs-2019.6/serial_d + /usr/bin/make -O -j5 V=1 VERBOSE=1 /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2019.6 -B/builddir/build/BUILD/gromacs-2019.6/serial_d --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019.6/serial_d/CMakeFiles /builddir/build/BUILD/gromacs-2019.6/serial_d/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/programs /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/CMakeFiles/mdrun_objlib.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/CMakeFiles/mdrun_objlib.dir/depend.internal". Scanning dependencies of target mdrun_objlib make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/depend.internal". 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-I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/buttons.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/view/buttons.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && 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/builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 1%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/fgrid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/fgrid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/view/fgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 1%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/filter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/filter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/view/filter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 1%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/logo.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/logo.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/view/logo.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 1%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/moduletest.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_test_objlib.dir/moduletest.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests/moduletest.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/gmx_arpack.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/linearalgebra/gmx_arpack.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp In file included from /usr/include/string.h:495, from /usr/include/c++/9/cstring:42, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:41: In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2046:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2050:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2054:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2058:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2022:25: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2074:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2089:25: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4910:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4914:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4918:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4922:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_smake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' trncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4886:25: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4938:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4953:25: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dseupd_(int*, const char*, int*, double*, double*, int*, double*, const char*, int*, const char*, int*, double*, double*, int*, double*, int*, int*, int*, double*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2507:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dseupd_(int*, const char*, int*, double*, double*, int*, double*, const char*, int*, const char*, int*, double*, double*, int*, double*, int*, int*, int*, double*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2503:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dseupd_(int*, const char*, int*, double*, double*, int*, double*, const char*, int*, const char*, int*, double*, double*, int*, double*, int*, int*, int*, double*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2499:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dseupd_(int*, const char*, int*, double*, double*, int*, double*, const char*, int*, const char*, int*, double*, double*, int*, double*, int*, int*, int*, double*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2495:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void sseupd_(int*, const char*, int*, float*, float*, int*, float*, const char*, int*, const char*, int*, float*, float*, int*, float*, int*, int*, int*, float*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:5371:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void sseupd_(int*, const char*, int*, float*, float*, int*, float*, const char*, int*, const char*, int*, float*, float*, int*, float*, int*, int*, int*, float*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:5367:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void sseupd_(int*, const char*, int*, float*, float*, int*, float*, const char*, int*, const char*, int*, float*, float*, int*, float*, int*, int*, int*, float*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:5363:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void sseupd_(int*, const char*, int*, float*, float*, int*, float*, const char*, int*, const char*, int*, float*, float*, int*, float*, int*, int*, int*, float*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:5359:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/matrix.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/linearalgebra/matrix.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/matrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 1%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/energycomparison.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_test_objlib.dir/energycomparison.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests/energycomparison.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 1%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/manager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/manager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/view/manager.cpp /builddir/build/BUILD/gromacs-2019.6/src/programs/view/manager.cpp: In function 'bool ManCallBack(t_x11*, XEvent*, Window, void*)': /builddir/build/BUILD/gromacs-2019.6/src/programs/view/manager.cpp:371:46: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 371 | put_atoms_in_compact_unitcell(man->molw->ePBC, ecenterDEF, man->box, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 | atomsArrayRef); | ~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/programs/view/manager.cpp:371:46: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/nrjac.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/linearalgebra/nrjac.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/nrjac.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/sparsematrix.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/errhandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/tmpi_malloc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 4%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/molps.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/molps.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/view/molps.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/atomic.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/atomic.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/atomic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/lock.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/lock.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/lock.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 4%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/nleg.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/nleg.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/view/nleg.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 1%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/terminationhelper.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_test_objlib.dir/terminationhelper.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests/terminationhelper.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/pthreads.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/pthreads.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/system_error.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/system_error.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/system_error.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/alltoall.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/alltoall.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/alltoall.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/barrier.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/barrier.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/barrier.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/p2p_send_recv.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/p2p_send_recv.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/p2p_send_recv.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/p2p_protocol.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/p2p_protocol.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/p2p_protocol.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/bcast.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/bcast.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/bcast.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 1%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/simulationdatabase.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_test_objlib.dir/simulationdatabase.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests/simulationdatabase.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/collective.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/collective.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/collective.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/p2p_wait.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/p2p_wait.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/p2p_wait.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 4%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/nmol.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/nmol.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/view/nmol.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/profile.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/profile.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/profile.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/reduce.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/reduce.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/reduce.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/event.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/event.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/event.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/reduce_fast.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/reduce_fast.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/reduce_fast.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/comm.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/comm.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/comm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 5%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/popup.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/popup.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/view/popup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/scatter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/scatter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/scatter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/gather.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/gather.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/gather.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/group.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/group.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/group.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 5%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/pulldown.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/pulldown.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/view/pulldown.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 6%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/x11.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/x11.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/view/x11.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_init.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_init.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/tmpi_init.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/topology.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/topology.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/topology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/list.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/list.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/list.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 5%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/view.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/view.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/view/view.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 6%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/xdlghi.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/xdlghi.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/view/xdlghi.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 6%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/xdlg.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/xdlg.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/view/xdlg.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 6%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/xdlgitem.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/xdlgitem.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/view/xdlgitem.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 6%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/xmb.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/xmb.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/view/xmb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 6%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/xutil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/xutil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/view/xutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 6%] Built target view_objlib make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/type.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/type.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/type.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/scan.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/scan.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/scan.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/numa_malloc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/numa_malloc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/numa_malloc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/once.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/once.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/once.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 6%] Built target libgromacs_external make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 5%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/trajectorycomparison.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_test_objlib.dir/trajectorycomparison.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests/trajectorycomparison.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 8%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/trajectoryreader.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_test_objlib.dir/trajectoryreader.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests/trajectoryreader.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 8%] Built target mdrun_test_objlib make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/selection/scanner.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/selection/scanner.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/scanner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/selection/parser.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/selection/parser.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/parser.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 22%] Built target libgromacs_generated make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 22%] Generating baseversion-gen.cpp cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/builddir/build/BUILD/gromacs-2019.6/serial_d/VersionInfo.cmake -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/baseversion-gen.cpp.cmakein -D VERSION_OUT=utility/baseversion-gen.cpp -D GMX_SOURCE_DOI=10.5281/zenodo.3685922 -P /builddir/build/BUILD/gromacs-2019.6/cmake/gmxConfigureVersionInfo.cmake cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/cmake -E touch utility/baseversion-gen.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/CMakeFiles/libgromacs.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/CMakeFiles/libgromacs.dir/depend.internal". Scanning dependencies of target libgromacs make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlinemodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlineinit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlinehelpcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlinehelpwriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlineoptionsmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlineparser.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/filenm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlinemodulemanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlinehelpmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlineprogramcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/viewit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/shellcompletions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/atomdistribution.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/box.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/box.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/box.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/box.cpp: In function 'void low_set_ddbox(int, int, const int (*)[3], const real (*)[3], bool, gmx::ArrayRef >, tmpi_comm_* const*, gmx_ddbox_t*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/box.cpp:235:13: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 235 | static void low_set_ddbox(int numPbcDimensions, | ^~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/box.cpp: In function 'void set_ddbox(const gmx_domdec_t&, bool, const real (*)[3], bool, gmx::ArrayRef >, gmx_ddbox_t*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/box.cpp:282:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 282 | void set_ddbox(const gmx_domdec_t &dd, | ^~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/box.cpp:296:22: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 296 | low_set_ddbox(dd.npbcdim, dd.numBoundedDimensions, | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 | &dd.nc, box, calculateUnboundedSize, xRef, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 | needToReduceCoordinateData ? &dd.mpi_comm_all : nullptr, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 | ddbox); | ~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/box.cpp:296:22: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/box.cpp: In function 'void set_ddbox_cr(const t_commrec&, const int (*)[3], const t_inputrec&, const real (*)[3], gmx::ArrayRef >, gmx_ddbox_t*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/box.cpp:308:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 308 | void set_ddbox_cr(const t_commrec &cr, | ^~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/box.cpp:317:22: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 317 | low_set_ddbox(ePBC2npbcdim(ir.ePBC), inputrec2nboundeddim(&ir), | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 | dd_nc, box, true, x, nullptr, ddbox); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/pargs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/dlb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/dlbtiming.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/collect.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/collect.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/collect.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/collect.cpp: In function 'void dd_collect_vec(gmx_domdec_t*, const t_state*, gmx::ArrayRef >, gmx::ArrayRef >)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/collect.cpp:247:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 247 | void dd_collect_vec(gmx_domdec_t *dd, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/collect.cpp:247:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/collect.cpp: In function 'void dd_collect_state(gmx_domdec_t*, const t_state*, t_state*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/collect.cpp:310:23: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 310 | dd_collect_vec(dd, state_local, makeConstArrayRef(state_local->x), globalXRef); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/collect.cpp:315:23: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 315 | dd_collect_vec(dd, state_local, makeConstArrayRef(state_local->v), globalVRef); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/collect.cpp:320:23: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 320 | dd_collect_vec(dd, state_local, makeConstArrayRef(state_local->cg_p), globalCgpRef); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/cellsizes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_network.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_network.cpp: In function 'void ddSendrecv(const gmx_domdec_t*, int, int, gmx::ArrayRef, gmx::ArrayRef) [with T = double]': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_network.cpp:128:1: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 128 | ddSendrecv(const gmx_domdec_t *dd, | ^~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_network.cpp:128:1: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_network.cpp:128:1: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_network.cpp: In function 'void ddSendrecv(const gmx_domdec_t*, int, int, gmx::ArrayRef, gmx::ArrayRef) [with T = gmx::BasicVector]': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_network.cpp:128:1: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_network.cpp:128:1: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_network.cpp:128:1: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/distribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_setup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_constraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_specatomcomm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_vsite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/localatomset.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/ga2la.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/dump.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/dump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/localatomsetdata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/localatomsetmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp: In function 'gmx_bool test_dd_cutoff(t_commrec*, const t_state&, real)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp:3015:14: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 3015 | set_ddbox(*dd, false, state.box, true, state.x, &ddbox); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp: In function 'void set_dd_limits_and_grid(const gmx::MDLogger&, t_commrec*, gmx_domdec_t*, const DomdecOptions&, const MdrunOptions&, const gmx_mtop_t*, const t_inputrec*, const real (*)[3], gmx::ArrayRef >, gmx_ddbox_t*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp:2137:13: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 2137 | static void set_dd_limits_and_grid(const gmx::MDLogger &mdlog, | ^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp:2358:21: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 2358 | set_ddbox_cr(*cr, &dd->nc, *ir, box, xGlobal, ddbox); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp:2383:21: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 2383 | set_ddbox_cr(*cr, nullptr, *ir, box, xGlobal, ddbox); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp: In function 'gmx_domdec_t* init_domain_decomposition(const gmx::MDLogger&, t_commrec*, const DomdecOptions&, const MdrunOptions&, const gmx_mtop_t*, const t_inputrec*, const real (*)[3], gmx::ArrayRef >, gmx::LocalAtomSetManager*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp:2953:15: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 2953 | gmx_domdec_t *init_domain_decomposition(const gmx::MDLogger &mdlog, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp:2979:27: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 2979 | set_dd_limits_and_grid(mdlog, cr, dd, options, mdrunOptions, | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2980 | mtop, ir, | ~~~~~~~~~ 2981 | box, xGlobal, | ~~~~~~~~~~~~~ 2982 | &ddbox); | ~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp: In function 'void dd_atom_spread_real(gmx_domdec_t*, real*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp:598:23: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 598 | ddSendrecv(dd, d, dddirBackward, | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 599 | sendBuffer, receiveBuffer); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp:598:23: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp:598:23: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp: In function 'void dd_atom_sum_real(gmx_domdec_t*, real*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp:664:23: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 664 | ddSendrecv(dd, d, dddirForward, | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 665 | sendBuffer, receiveBuffer); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp:664:23: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp:664:23: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp: In function 'void dd_move_x(gmx_domdec_t*, real (*)[3], gmx::ArrayRef >, gmx_wallcycle*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp:296:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 296 | void dd_move_x(gmx_domdec_t *dd, | ^~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp:386:23: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 386 | ddSendrecv(dd, d, dddirBackward, | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 387 | sendBuffer, receiveBuffer); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp:386:23: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp:386:23: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp: In function 'void dd_move_f(gmx_domdec_t*, gmx::ArrayRef >, real (*)[3], gmx_wallcycle*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp:408:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 408 | void dd_move_f(gmx_domdec_t *dd, | ^~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp:472:23: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 472 | ddSendrecv(dd, d, dddirForward, | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 473 | sendBuffer, receiveBuffer); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp:472:23: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp:472:23: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/utility.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/utility.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/utility.h:45, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/utility.cpp:45: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = gmx::BasicVector; _Alloc = gmx::Allocator, gmx::AlignedAllocationPolicy>]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/utility.h:45, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/utility.cpp:45: /usr/include/c++/9/bits/stl_vector.h: In function 'void dd_resize_state(t_state*, gmx::PaddedVector >*, int)': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_topology.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_topology.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_topology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/3dtransforms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/do_fit.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/do_fit.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/do_fit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/functions.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/functions.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/functions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/invertmatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/redistribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/units.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/units.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/units.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/utilities.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/utilities.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/utilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/veccompare.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/veccompare.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/veccompare.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/vecdump.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/vecdump.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/vecdump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/md_enums.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/df_history.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/iforceprovider.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/observableshistory.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/inputrec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/helpmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/state.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/state.cpp: In function 'real (* makeRvecArray(gmx::ArrayRef >, gmx::index))[3]': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/state.cpp:207:7: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 207 | rvec *makeRvecArray(gmx::ArrayRef v, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/state.h:59, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/state.cpp:40: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/state.h:59, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/state.cpp:40: /usr/include/c++/9/bits/stl_vector.h: In function 'void init_gtc_state(t_state*, int, int, int)': /usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 957 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 957 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 957 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 957 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 957 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/state.h:59, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/state.cpp:40: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = gmx::BasicVector; _Alloc = gmx::Allocator, gmx::HostAllocationPolicy>]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector, gmx::Allocator, gmx::HostAllocationPolicy> >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::HostAllocationPolicy> > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = gmx::BasicVector; _Alloc = gmx::Allocator, gmx::AlignedAllocationPolicy>]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >'} changed in GCC 7.1 In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/state.h:59, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/state.cpp:40: /usr/include/c++/9/bits/stl_vector.h: In function 'void state_change_natoms(t_state*, int)': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::HostAllocationPolicy> > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/helpformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/boxutilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/helptopic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/rstparser.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc-simd.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/pbc-simd.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/pbc-simd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/partition.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.cpp: In function 'void dd_move_cellx(gmx_domdec_t*, const gmx_ddbox_t*, real*, real*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.cpp:259:23: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 259 | ddSendrecv(dd, d, dddirBackward, | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 260 | gmx::arrayRefFromArray(&buf_s[0].min0, numReals), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 | gmx::arrayRefFromArray(&buf_r[0].min0, numReals)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.cpp:259:23: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.cpp:259:23: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.h:48, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.cpp:46: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Tp = gmx::BasicVector; _Alloc = std::allocator >]': /usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 721 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.h:48, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.cpp:46: /usr/include/c++/9/bits/stl_vector.h: In function 'void setup_dd_communication(gmx_domdec_t*, real (*)[3], gmx_ddbox_t*, t_forcerec*, t_state*, gmx::PaddedVector >*)': /usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 1662 | _M_range_insert(__pos, __first, __last, | ^~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.cpp:2236:34: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 2236 | ddSendrecv(dd, dim_ind, dddirBackward, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2237 | work.positionBuffer, rvecBufferRef); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.cpp:2236:34: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.cpp:2236:34: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.cpp: In function 'void dd_partition_system(FILE*, const gmx::MDLogger&, int64_t, const t_commrec*, gmx_bool, int, t_state*, const gmx_mtop_t*, const t_inputrec*, t_state*, gmx::PaddedVector >*, gmx::MDAtoms*, gmx_localtop_t*, t_forcerec*, gmx_vsite_t*, gmx::Constraints*, t_nrnb*, gmx_wallcycle*, gmx_bool)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.cpp:3244:18: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 3244 | set_ddbox(*dd, true, | ~~~~~~~~~^~~~~~~~~~~ 3245 | DDMASTER(dd) ? state_global->box : nullptr, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3246 | true, xGlobal, | ~~~~~~~~~~~~~~ 3247 | &ddbox); | ~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.cpp:3297:18: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 3297 | set_ddbox(*dd, bMasterState, state_local->box, | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3298 | true, state_local->x, &ddbox); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.cpp:3316:18: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 3316 | set_ddbox(*dd, bMasterState, state_local->box, | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3317 | bNStGlobalComm, state_local->x, &ddbox); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.cpp:3336:39: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 3336 | comm->updateGroupsCog->addCogs(gmx::arrayRefFromArray(dd->globalAtomGroupIndices.data(), dd->ncg_home), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3337 | state_local->x); | ~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.cpp:3336:39: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.cpp:3364:43: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 3364 | comm->updateGroupsCog->addCogs(gmx::arrayRefFromArray(dd->globalAtomGroupIndices.data(), dd->ncg_home), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3365 | state_local->x); | ~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.cpp:3364:43: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.cpp:3419:34: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 3419 | nbnxn_put_on_grid(fr->nbv->nbs.get(), fr->ePBC, state_local->box, | make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3420 | 0, | ~~ 3421 | comm->zones.size[0].bb_x0, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 3422 | comm->zones.size[0].bb_x1, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 3423 | comm->updateGroupsCog.get(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3424 | 0, dd->ncg_home, | ~~~~~~~~~~~~~~~~ 3425 | comm->zones.dens_zone0, | ~~~~~~~~~~~~~~~~~~~~~~~ 3426 | fr->cginfo, | ~~~~~~~~~~~ 3427 | state_local->x, | ~~~~~~~~~~~~~~~ 3428 | ncg_moved, bRedist ? comm->movedBuffer.data() : nullptr, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3429 | fr->nbv->grp[eintLocal].kernel_type, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3430 | fr->nbv->nbat); | ~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/random/seed.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/random/seed.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/seed.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/rmpbc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tabulatednormaldistribution.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/helpwritercontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/mshift.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/pbc.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/pbc.cpp: In function 'void put_atoms_in_box(int, const real (*)[3], gmx::ArrayRef >)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/pbc.cpp:1413:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 1413 | void put_atoms_in_box(int ePBC, const matrix box, gmx::ArrayRef x) | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/pbc.cpp: In function 'void put_atoms_in_triclinic_unitcell(int, const real (*)[3], gmx::ArrayRef >)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/pbc.cpp:1473:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 1473 | void put_atoms_in_triclinic_unitcell(int ecenter, const matrix box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/pbc.cpp: In function 'void put_atoms_in_compact_unitcell(int, int, const real (*)[3], gmx::ArrayRef >)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/pbc.cpp:1531:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 1531 | void put_atoms_in_compact_unitcell(int ePBC, int ecenter, const matrix box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/pbc.cpp:1531:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/forcetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/walltime_accounting.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/splineutil.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/splineutil.cpp: In function 'real gmx::internal::findSmallestQuotientOfFunctionAndSecondDerivative(gmx::ArrayRef, double, const std::pair&)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/splineutil.cpp:212:1: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 212 | findSmallestQuotientOfFunctionAndSecondDerivative(ArrayRef function, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/splineutil.cpp: In function 'real gmx::internal::findSmallestQuotientOfFunctionAndThirdDerivative(gmx::ArrayRef, double, const std::pair&)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/splineutil.cpp:290:1: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 290 | findSmallestQuotientOfFunctionAndThirdDerivative(ArrayRef function, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/splineutil.cpp: In function 'void gmx::internal::throwUnlessDerivativeIsConsistentWithFunction(gmx::ArrayRef, gmx::ArrayRef, double, const std::pair&)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/splineutil.cpp:112:1: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 112 | throwUnlessDerivativeIsConsistentWithFunction(ArrayRef function, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/splineutil.cpp:112:1: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/splineutil.cpp: In function 'std::vector gmx::internal::vectorSecondDerivative(gmx::ArrayRef, double)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/splineutil.cpp:309:1: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 309 | vectorSecondDerivative(ArrayRef f, double spacing) | ^~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/wallcycle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/cubicsplinetable.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/cubicsplinetable.cpp: In constructor 'gmx::CubicSplineTable::CubicSplineTable(std::initializer_list, const std::pair&, real)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/cubicsplinetable.cpp:397:1: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 397 | CubicSplineTable::CubicSplineTable(std::initializer_list numericalInputList, | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/cubicsplinetable.cpp:397:1: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/atomprop.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/quadraticsplinetable.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/quadraticsplinetable.cpp: In constructor 'gmx::QuadraticSplineTable::QuadraticSplineTable(std::initializer_list, const std::pair&, real)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/quadraticsplinetable.cpp:361:1: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 361 | QuadraticSplineTable::QuadraticSplineTable(std::initializer_list numericalInputList, | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/quadraticsplinetable.cpp:170:100: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 170 | std::vector thirdDerivative(internal::vectorSecondDerivative(derivative, inputSpacing)); | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/block.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/block.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/block.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atoms.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/atoms.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/atoms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/ifunc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/atomsbuilder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/exclusionblocks.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/forcefieldparameters.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/idef.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/idef.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/idef.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/invblock.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/invblock.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/invblock.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/residuetypes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/symtab.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/symtab.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/symtab.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/index.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/index.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/index.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/alignedallocator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/baseversion.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/topsort.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/topsort.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/topsort.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/basenetwork.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/topology.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/topology.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/topology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/compare.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/compare.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/compare.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/binaryinformation.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/binaryinformation.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/binaryinformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o cd 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'/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/errorcodes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/cstringutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/errorformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/mtop_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/fatalerror.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/fileredirector.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/directoryenumerator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/datafilefinder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/gmxassert.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/exceptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/futil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/futil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/futil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/gmxomp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/filestream.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/filestream.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/filestream.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/init.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/init.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/init.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/int64_to_int.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxregex.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/gmxregex.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/gmxregex.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/ikeyvaluetreeerror.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/logger.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/logger.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/logger.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/inmemoryserializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/messagestringcollector.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/messagestringcollector.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/messagestringcollector.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/keyvaluetree.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H 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'/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/pleasecite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/programcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/physicalnodecommunicator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/smalloc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/keyvaluetreeserializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/strdb.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/strdb.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/strdb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/strconvert.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/path.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/path.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/path.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/stringstream.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/sysinfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/txtdump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/textreader.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/textreader.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/textreader.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/textwriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/variant.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/variant.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/variant.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o cd 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'/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/confio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/confio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/confio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/filetypes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/espio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/espio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/espio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/gmx_internal_xdr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/g96io.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/enxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio-xdr.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmxfio-xdr.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/gmxfio-xdr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/keyvaluetreetransform.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/gmxfio.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/gmxfio.h:44, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/gmxfio.cpp:39: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {}; _Tp = gmx_file_position_t; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In function 'std::vector gmx_fio_get_output_file_positions()': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/md5.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/md5.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/md5.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/groio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/groio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/groio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/libxdrf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/mtxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/oenv.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/matio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/matio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/matio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/timecontrol.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/checkpoint.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/pdbio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/trrio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/tngio.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/arrayref.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/tngio.h:42, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/tngio.cpp:37: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/arrayref.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/tngio.h:42, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/tngio.cpp:37: /usr/include/c++/9/bits/stl_vector.h: In function 'void gmx_tng_add_mtop(gmx_tng_trajectory_t, const gmx_mtop_t*)': /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/vmdio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/vmdio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/vmdio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/trxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/warninp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/writeps.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/xdrd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 39%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/__/external/vmd_molfile/vmddlopen.c.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/vmd_molfile/vmddlopen.c.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/vmd_molfile/vmddlopen.c make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/xtcio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/xvgr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/readinp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/swap/swapcoords.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/swap/swapcoords.cpp:51: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gmx::LocalAtomSet}; _Tp = swap_group; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/include/c++/9/bits/vector.tcc: In function 'void init_swapcoords(FILE*, t_inputrec*, const char*, gmx_mtop_t*, const t_state*, ObservablesHistory*, t_commrec*, gmx::LocalAtomSetManager*, const gmx_output_env_t*, const MdrunOptions&)': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/output.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pulling/output.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/output.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/tpxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/essentialdynamics/edsam.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/filenm.h:48, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/essentialdynamics/edsam.cpp:46: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {edpar&}; _Tp = edpar; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In function 'std::unique_ptr init_edsam(const gmx::MDLogger&, const char*, const char*, const gmx_mtop_t*, const t_inputrec*, const t_commrec*, gmx::Constraints*, const t_state*, ObservablesHistory*, const gmx_output_env_t*, gmx_bool)': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pull.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pull.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pull.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/arrayref.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pull.h:58, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pull.cpp:39: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {t_pull_coord&}; _Tp = pull_coord_work_t; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {t_pull_group&, gmx::LocalAtomSet, const bool&}; _Tp = pull_group_work_t; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const t_pull_group&, const gmx::LocalAtomSet&, bool&}; _Tp = pull_group_work_t; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/include/c++/9/bits/vector.tcc: In function 'pull_t* init_pull(FILE*, const pull_params_t*, const t_inputrec*, const gmx_mtop_t*, const t_commrec*, gmx::LocalAtomSetManager*, real)': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/arrayref.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pull.h:58, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pull.cpp:39: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/arrayref.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pull.h:58, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pull.cpp:39: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pull.cpp:2259:1: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 2259 | } | ^ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pull.cpp:2259:1: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pull.cpp:2259:1: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pullutil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pullutil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pullutil.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pullutil.cpp: In function 'bool pullCheckPbcWithinGroup(const pull_t&, gmx::ArrayRef >, const t_pbc&, int, real)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pullutil.cpp:963:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 963 | bool pullCheckPbcWithinGroup(const pull_t &pull, | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/stringutil.h:50, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/network.h:48, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pullutil.cpp:45: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/stringutil.h:50, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/network.h:48, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pullutil.cpp:45: /usr/include/c++/9/bits/stl_vector.h: In function 'void allocStatePrevStepPullCom(t_state*, pull_t*)': /usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 957 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasparams.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasparams.h:53, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasparams.cpp:47: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In constructor 'gmx::BiasParams::BiasParams(const gmx::AwhParams&, const gmx::AwhBiasParams&, const std::vector&, double, double, gmx::BiasParams::DisableUpdateSkips, int, const std::vector&, int)': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biassharing.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/biassharing.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biassharing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/bias.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/bias.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp: In member function 'void gmx::Bias::updateForceCorrelationGrid(gmx::ArrayRef, double)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp:378:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 378 | void Bias::updateForceCorrelationGrid(gmx::ArrayRef probWeightNeighbor, | ^~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp:399:45: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 399 | state_.calcUmbrellaForceAndPotential(dimParams_, grid_, indexNeighbor, forceFromNeighbor); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp:70: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/correlationgrid.h:107:41: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 107 | tensors_[pointIndex].addData(weight, data, blockLengthMeasure == BlockLengthMeasure::Weight, t); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp: In member function 'gmx::ArrayRef gmx::Bias::calcForceAndUpdateBias(const double*, double*, double*, const t_commrec*, const gmx_multisim_t*, double, int64_t, int64_t, FILE*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp:144:39: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 144 | updateForceCorrelationGrid(probWeightNeighbor, t); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp:162:34: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 162 | state_.calcConvolvedForce(dimParams_, grid_, probWeightNeighbor, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 | tempForce_, biasForce_); | ~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp:162:34: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp:162:34: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp:162:34: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp:173:49: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 173 | state_.calcUmbrellaForceAndPotential(dimParams_, grid_, coordState.umbrellaGridpoint(), biasForce_); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp:182:54: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 182 | double newPotential = state_.moveUmbrella(dimParams_, grid_, probWeightNeighbor, biasForce_, step, seed, params_.biasIndex); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp:182:54: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp:182:54: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/awh.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/awh.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/awh.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/awh.h:69, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/awh.cpp:47: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double&, const double&, const double&}; _Tp = gmx::DimParams; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gmx::Bias, std::vector >&}; _Tp = gmx::BiasCoupledToSystem; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/include/c++/9/bits/vector.tcc: In constructor 'gmx::Awh::Awh(FILE*, const t_inputrec&, const t_commrec*, const gmx_multisim_t*, const gmx::AwhParams&, const string&, pull_t*)': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pull_rotation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/coordstate.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/coordstate.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/coordstate.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/coordstate.cpp: In member function 'void gmx::CoordState::sampleUmbrellaGridpoint(const gmx::Grid&, int, gmx::ArrayRef, int64_t, int64_t, int)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/coordstate.cpp:131:1: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 131 | CoordState::sampleUmbrellaGridpoint(const Grid &grid, | ^~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biaswriter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/biaswriter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biaswriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationtensor.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationtensor.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/correlationtensor.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/correlationtensor.cpp: In member function 'void gmx::CorrelationTensor::addData(double, gmx::ArrayRef, bool, double)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/correlationtensor.cpp:226:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 226 | void CorrelationTensor::addData(double weight, | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/correlationtensor.cpp:226:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/correlationtensor.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/correlationtensor.cpp:47: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {int&, double}; _Tp = gmx::CorrelationBlockData; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In constructor 'gmx::CorrelationTensor::CorrelationTensor(int, int, double)': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/correlationhistory.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationgrid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationgrid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/correlationgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/pointstate.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/pointstate.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/pointstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/histogramsize.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/histogramsize.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/histogramsize.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/histogramsize.cpp: In member function 'double gmx::HistogramSize::newHistogramSizeInitialStage(const gmx::BiasParams&, double, bool, gmx::ArrayRef, FILE*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/histogramsize.cpp:78:8: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 78 | double HistogramSize::newHistogramSizeInitialStage(const BiasParams ¶ms, | ^~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/histogramsize.cpp: In member function 'double gmx::HistogramSize::newHistogramSize(const gmx::BiasParams&, double, bool, const std::vector&, gmx::ArrayRef, FILE*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/histogramsize.cpp:210:8: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 210 | double HistogramSize::newHistogramSize(const BiasParams ¶ms, | ^~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/histogramsize.cpp:242:56: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 242 | newHistogramSize = newHistogramSizeInitialStage(params, t, covered, weightsumCovering, fplog); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/histogramsize.cpp:242:56: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/grid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/grid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/grid.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/dimparams.h:52, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/grid.h:60, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/grid.cpp:47: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double&, double&, double&, double&}; _Tp = gmx::GridAxis; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In constructor 'gmx::Grid::Grid(const std::vector&, const gmx::AwhDimParams*)': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&, const double&, double, int&}; _Tp = gmx::GridAxis; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In function 'void gmx::mapGridToDataGrid(std::vector*, const double* const*, int, const string&, const gmx::Grid&, const string&)': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/grid.cpp:830:1: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 830 | } | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp: In function 'void gmx::{anonymous}::sumOverSimulations(gmx::ArrayRef, const t_commrec*, const gmx_multisim_t*) [with T = double]': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:128:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 128 | void sumOverSimulations(gmx::ArrayRef arrayRef, | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp: In function 'void gmx::{anonymous}::updateTargetDistribution(gmx::ArrayRef, const gmx::BiasParams&)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:293:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 293 | void updateTargetDistribution(gmx::ArrayRef pointState, | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp: In member function 'double gmx::BiasState::calcUmbrellaForceAndPotential(const std::vector&, const gmx::Grid&, int, gmx::ArrayRef) const': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:423:8: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 423 | double BiasState::calcUmbrellaForceAndPotential(const std::vector &dimParams, | ^~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp: In member function 'void gmx::BiasState::calcConvolvedForce(const std::vector&, const gmx::Grid&, gmx::ArrayRef, gmx::ArrayRef, gmx::ArrayRef) const': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:443:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 443 | void BiasState::calcConvolvedForce(const std::vector &dimParams, | ^~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:443:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:443:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:463:38: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 463 | calcUmbrellaForceAndPotential(dimParams, grid, indexNeighbor, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 | forceFromNeighbor); | ~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp: In member function 'double gmx::BiasState::moveUmbrella(const std::vector&, const gmx::Grid&, gmx::ArrayRef, gmx::ArrayRef, int64_t, int64_t, int)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:474:8: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 474 | double BiasState::moveUmbrella(const std::vector &dimParams, | ^~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:474:8: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:474:8: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:483:40: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 483 | coordState_.sampleUmbrellaGridpoint(grid, coordState_.gridpointIndex(), probWeightNeighbor, step, seed, indexSeed); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:483:40: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:487:38: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 487 | calcUmbrellaForceAndPotential(dimParams, grid, coordState_.umbrellaGridpoint(), newForce); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp: In member function 'void gmx::BiasState::sampleProbabilityWeights(const gmx::Grid&, gmx::ArrayRef)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:1231:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 1231 | void BiasState::sampleProbabilityWeights(const Grid &grid, | ^~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp: In member function 'void gmx::BiasState::sampleCoordAndPmf(const gmx::Grid&, gmx::ArrayRef, double)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:1286:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 1286 | void BiasState::sampleCoordAndPmf(const Grid &grid, | ^~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp: In member function 'void gmx::BiasState::updateFreeEnergyAndAddSamplesToHistogram(const std::vector&, const gmx::Grid&, const gmx::BiasParams&, const t_commrec*, const gmx_multisim_t*, double, int64_t, FILE*, std::vector*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:1074:62: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 1074 | double newHistogramSize = histogramSize_.newHistogramSize(params, t, detectedCovering, points_, weightSumCovering_, fplog); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:1074:62: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:1074:62: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:1074:62: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:1074:62: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:1074:62: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:1074:62: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:1074:62: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/simd/support.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/simd/support.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/support.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/imd/imdsocket.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/angle_correction.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/angle_correction.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/angle_correction.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/binsearch.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/binsearch.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/binsearch.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dens_filter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/dens_filter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/dens_filter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/imd/imd.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/imd/imd.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/imd/imd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/read-params.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/read-params.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/read-params.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/cmat.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/cmat.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/cmat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/fitahx.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/fitahx.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/fitahx.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/eigio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/eigio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/eigio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/anadih.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/anadih.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/anadih.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dlist.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/dlist.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/dlist.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_anadock.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_anadock.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_anadock.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_angle.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_angle.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_angle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_analyze.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_analyze.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_analyze.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bundle.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_bundle.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_bundle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_anaeig.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_anaeig.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_anaeig.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_awh.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_awh.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_awh.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/filenm.h:48, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/pargs.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_awh.cpp:54: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/filenm.h:48, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/pargs.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_awh.cpp:54: /usr/include/c++/9/bits/stl_vector.h: In function 'int gmx_awh(int, char**)': /usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 957 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 957 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bar.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_bar.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_bar.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_clustsize.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_clustsize.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_clustsize.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_chi.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_chi.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_chi.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_confrms.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_confrms.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_confrms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_covar.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_covar.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_covar.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_density.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_density.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_density.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densmap.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_densmap.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_densmap.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_current.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_current.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_current.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dielectric.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_dielectric.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_dielectric.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densorder.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_densorder.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_densorder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_cluster.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_cluster.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_cluster.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dos.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_dos.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_dos.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_disre.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_disre.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_disre.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dyecoupl.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_dyecoupl.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_dyecoupl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_do_dssp.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_do_dssp.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_do_dssp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dipoles.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_dipoles.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_dipoles.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dyndom.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_dyndom.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_dyndom.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_enemat.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_enemat.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_enemat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_eneconv.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_eneconv.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_eneconv.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_filter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_filter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_filter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_editconf.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_editconf.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_editconf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_genpr.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_genpr.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_genpr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_energy.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_energy.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_energy.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_h2order.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_h2order.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_h2order.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_gyrate.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_gyrate.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_gyrate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_genion.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_genion.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_genion.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helix.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_helix.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_helix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_lie.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_lie.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_lie.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helixorient.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_helixorient.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_helixorient.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_make_edi.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_make_edi.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_make_edi.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hydorder.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_hydorder.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_hydorder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mk_angndx.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_mk_angndx.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_mk_angndx.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mdmat.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_mdmat.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_mdmat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_make_ndx.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_make_ndx.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_make_ndx.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mindist.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_mindist.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_mindist.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_morph.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_morph.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_morph.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hbond.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_hbond.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_hbond.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmeig.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_nmeig.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_nmeig.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmens.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_nmens.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_nmens.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_msd.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_msd.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_msd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmtraj.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_nmtraj.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_nmtraj.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_potential.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_potential.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_potential.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmr.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_nmr.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_nmr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_polystat.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_polystat.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_polystat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_order.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_order.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_order.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_principal.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_principal.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_principal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rama.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_rama.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_rama.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_pme_error.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_pme_error.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_pme_error.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotacf.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_rotacf.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_rotacf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotmat.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_rotmat.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_rotmat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsf.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_rmsf.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_rmsf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsdist.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_rmsdist.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_rmsdist.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saxs.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_saxs.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_saxs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rms.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_rms.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_rms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saltbr.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_saltbr.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_saltbr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sigeps.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_sigeps.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_sigeps.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sans.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_sans.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_sans.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spatial.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_spatial.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_spatial.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sorient.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_sorient.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_sorient.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spol.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_spol.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_spol.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_tcaf.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_tcaf.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_tcaf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sham.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_sham.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_sham.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_trjorder.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_trjorder.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_trjorder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_trjcat.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_trjcat.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_trjcat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_traj.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_traj.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_traj.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_vanhove.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_vanhove.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_vanhove.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_velacc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_velacc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_velacc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_trjconv.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_trjconv.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_trjconv.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_trjconv.cpp: In function 'int gmx_trjconv(int, char**)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_trjconv.cpp:1702:66: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 1702 | put_atoms_in_compact_unitcell(ePBC, ecenter, fr.box, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ 1703 | positionsArrayRef); | ~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_trjconv.cpp:1702:66: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_trjconv.cpp:373:50: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 373 | put_atoms_in_compact_unitcell(ePBC, ecenter, box, newComArrayRef); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_trjconv.cpp:373:50: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_trjconv.cpp:316:46: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 316 | put_atoms_in_compact_unitcell(ePBC, ecenter, box, newComArrayRef); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_trjconv.cpp:316:46: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wheel.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_wheel.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_wheel.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_tune_pme.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_tune_pme.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_tune_pme.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/hxprops.cpp.o cd 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'/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nrama.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/nrama.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/nrama.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/powerspect.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/powerspect.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/powerspect.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/pp2shift.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/pp2shift.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/pp2shift.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nsfactor.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/nsfactor.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/nsfactor.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/princ.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/princ.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/princ.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_xpm2ps.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_xpm2ps.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_xpm2ps.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/calch.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/calch.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/calch.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/thermochemistry.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/thermochemistry.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/thermochemistry.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/thermochemistry.cpp: In function 'double calcZeroPointEnergy(gmx::ArrayRef, real)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/thermochemistry.cpp:53:8: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 53 | double calcZeroPointEnergy(gmx::ArrayRef eigval, | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/thermochemistry.cpp: In function 'double calcVibrationalInternalEnergy(gmx::ArrayRef, real, gmx_bool, real)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/thermochemistry.cpp:67:8: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 67 | double calcVibrationalInternalEnergy(gmx::ArrayRef eigval, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/thermochemistry.cpp: In function 'double calcVibrationalHeatCapacity(gmx::ArrayRef, real, gmx_bool, real)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/thermochemistry.cpp:99:8: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 99 | double calcVibrationalHeatCapacity(gmx::ArrayRef eigval, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/thermochemistry.cpp: In function 'double calcQuasiHarmonicEntropy(gmx::ArrayRef, real, gmx_bool, real)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/thermochemistry.cpp:174:8: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 174 | double calcQuasiHarmonicEntropy(gmx::ArrayRef eigval, | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/thermochemistry.cpp: In function 'double calcSchlitterEntropy(gmx::ArrayRef, real, gmx_bool)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/thermochemistry.cpp:206:8: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 206 | double calcSchlitterEntropy(gmx::ArrayRef eigval, | ^~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/add_par.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/add_par.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/add_par.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/sfactor.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/sfactor.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/sfactor.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/convparm.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/convparm.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/convparm.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/block.h:42, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/grompp-impl.h:42, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/convparm.h:41, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/convparm.cpp:40: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const t_iparams&}; _Tp = t_iparams; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/block.h:42, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/grompp-impl.h:42, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/convparm.h:41, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/convparm.cpp:40: /usr/include/c++/9/bits/stl_vector.h: In function 'void enter_function(t_params*, t_functype, int, real, gmx_ffparams_t*, InteractionList*, bool, bool)': /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/fflibutil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/fflibutil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/fflibutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wham.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_wham.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_wham.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_maxwell_velocities.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gen_maxwell_velocities.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/gen_maxwell_velocities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_ad.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gen_ad.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/gen_ad.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genhydro.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/genhydro.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/genhydro.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_bond_atomtype.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_bond_atomtype.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/gpp_bond_atomtype.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genconf.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/genconf.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/genconf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_atomtype.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_atomtype.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/gpp_atomtype.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_nextnb.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_nextnb.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/gpp_nextnb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/h_db.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/h_db.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/h_db.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_vsite.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gen_vsite.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/gen_vsite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hackblock.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/hackblock.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/hackblock.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gmxcpp.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gmxcpp.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/gmxcpp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hizzie.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/hizzie.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/hizzie.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/makeexclusiondistances.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/makeexclusiondistances.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/makeexclusiondistances.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/makeexclusiondistances.h:38, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/makeexclusiondistances.cpp:37: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/makeexclusiondistances.h:38, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/makeexclusiondistances.cpp:37: /usr/include/c++/9/bits/stl_vector.h: In function 'std::vector makeExclusionDistances(const t_atoms*, gmx_atomprop_t, real, real)': /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/keyvaluetreemdpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/keyvaluetreemdpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/keyvaluetreemdpwriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/nm2type.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/nm2type.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/nm2type.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pgutil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/pgutil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/pgutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/grompp.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/grompp.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/grompp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2top.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2top.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/pdb2top.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/insert-molecules.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/insert-molecules.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/insert-molecules.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/insert-molecules.cpp:45: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Tp = gmx::BasicVector; _Alloc = std::allocator >]': /usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 721 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/insert-molecules.cpp:45: /usr/include/c++/9/bits/stl_vector.h: In member function 'virtual int gmx::{anonymous}::InsertMolecules::run()': /usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 1662 | _M_range_insert(__pos, __first, __last, | ^~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 1662 | _M_range_insert(__pos, __first, __last, | ^~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readpull.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/readpull.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/readpull.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/readpull.cpp: In function 'pull_t* set_pull_init(t_inputrec*, const gmx_mtop_t*, real (*)[3], real (*)[3], real, warninp_t)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/readpull.cpp:537:36: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 537 | pullCheckPbcWithinGroup(*pull_work, | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 538 | gmx::arrayRefFromArray(reinterpret_cast(x), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 | mtop->natoms), | ~~~~~~~~~~~~~~ 540 | pbc, g, c_pullGroupSmallGroupThreshold); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/readpull.cpp:564:40: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 564 | pullCheckPbcWithinGroup(*pull_work, | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 565 | gmx::arrayRefFromArray(reinterpret_cast(x), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 | mtop->natoms), | ~~~~~~~~~~~~~~ 567 | pbc, g, c_pullGroupPbcMargin); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readrot.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/readrot.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/readrot.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/resall.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/resall.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/resall.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/specbond.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/specbond.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/specbond.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/ter_db.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/ter_db.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/ter_db.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2gmx.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2gmx.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/pdb2gmx.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/tomorse.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/tomorse.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/tomorse.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topdirs.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/topdirs.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/topdirs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topshake.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/topshake.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/topshake.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/solvate.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/solvate.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/solvate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/solvate.cpp:44: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Tp = gmx::BasicVector; _Alloc = std::allocator >]': /usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 721 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/solvate.cpp:44: /usr/include/c++/9/bits/stl_vector.h: In function 'int gmx_solvate(int, char**)': /usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 1662 | _M_range_insert(__pos, __first, __last, | ^~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 1662 | _M_range_insert(__pos, __first, __last, | ^~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/toputil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toppush.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/toppush.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/toppush.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/topio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/topio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/x2top.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/x2top.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/x2top.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/xlate.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/xlate.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/xlate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/vsite_parm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/crosscorr.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/correlationfunctions/crosscorr.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/correlationfunctions/crosscorr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/gmx_lmcurve.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/correlationfunctions/gmx_lmcurve.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/correlationfunctions/gmx_lmcurve.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/integrate.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/correlationfunctions/integrate.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/correlationfunctions/integrate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/polynomials.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/correlationfunctions/polynomials.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/correlationfunctions/polynomials.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/expfit.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/correlationfunctions/expfit.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/correlationfunctions/expfit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/autocorr.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/correlationfunctions/autocorr.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/correlationfunctions/autocorr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/filenm.h:48, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/pargs.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/correlationfunctions/autocorr.h:53, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/correlationfunctions/autocorr.cpp:46: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/filenm.h:48, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/pargs.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/correlationfunctions/autocorr.h:53, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/correlationfunctions/autocorr.cpp:46: /usr/include/c++/9/bits/stl_vector.h: In function 'void low_do_four_core(int, real*, real*, int)': /usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 957 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readir.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/readir.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/readir.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/statistics/statistics.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/statistics/statistics.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/statistics/statistics.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/manyautocorrelation.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/correlationfunctions/manyautocorrelation.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/correlationfunctions/manyautocorrelation.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/correlationfunctions/manyautocorrelation.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/correlationfunctions/manyautocorrelation.cpp:44: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/correlationfunctions/manyautocorrelation.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/correlationfunctions/manyautocorrelation.cpp:44: /usr/include/c++/9/bits/stl_vector.h: In function '_Z16many_auto_correlPSt6vectorIS_IdSaIdEESaIS1_EE._omp_fn.0': /usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 957 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 957 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h: In function 'int many_auto_correl(std::vector >*)': /usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 957 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodule.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/datamodule.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/datamodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/abstractdata.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/abstractdata.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/abstractdata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataframe.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/dataframe.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/dataframe.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/analysisdata.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/analysisdata.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/analysisdata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/arraydata.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/arraydata.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/arraydata.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/arraydata.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/arraydata.cpp:44: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In constructor 'gmx::AbstractAnalysisArrayData::AbstractAnalysisArrayData()': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataproxy.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/dataproxy.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/dataproxy.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodulemanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/datamodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/datamodulemanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/frameaverager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/modules/frameaverager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/modules/frameaverager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/average.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/modules/average.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/modules/average.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/modules/displacement.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datastorage.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/datastorage.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/datastorage.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/datastorage.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/datastorage.cpp:44: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gmx::AnalysisDataValue&}; _Tp = gmx::AnalysisDataValue; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/datastorage.cpp: In member function 'void gmx::internal::AnalysisDataStorageFrameData::addPointSet(int, int, gmx::ArrayRef)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/datastorage.cpp:610:1: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 610 | AnalysisDataStorageFrameData::addPointSet(int dataSetIndex, int firstColumn, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/datastorage.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/datastorage.cpp:44: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/datastorage.cpp: In member function 'void gmx::AnalysisDataStorageFrame::finishPointSet()': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/datastorage.cpp:750:27: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 750 | data_->addPointSet(currentDataSet_, firstColumn, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 751 | makeConstArrayRef(values_). | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 752 | subArray(begin, end-begin)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/datastorage.cpp:750:27: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/centerofmass.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/centerofmass.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/centerofmass.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/lifetime.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/modules/lifetime.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/modules/lifetime.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/plot.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/modules/plot.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/modules/plot.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/histogram.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/modules/histogram.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/modules/histogram.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/mempool.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/mempool.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/mempool.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/evaluate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/indexutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/nbsearch.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/poscalc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/position.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/position.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/position.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/parsetree.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/compiler.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/compiler.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/compiler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/params.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/params.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/params.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/scanner_internal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selection.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/selection.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/selection.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/selection.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/selection.cpp:44: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/selection.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/selection.cpp:44: /usr/include/c++/9/bits/stl_vector.h: In function 'void gmx::internal::{anonymous}::computeMassesAndCharges(const gmx_mtop_t*, const gmx_ana_pos_t&, std::vector*, std::vector*)': /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/selection.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/selection.cpp:44: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/selection.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/selection.cpp:44: /usr/include/c++/9/bits/stl_vector.h: In member function 'void gmx::internal::SelectionData::initializeMassesAndCharges(const gmx_mtop_t*)': /usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 957 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 957 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionbehavior.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/selectionoptionbehavior.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/selectionoptionbehavior.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/selectionoptionmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selelem.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/selelem.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/selelem.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/selectionoption.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/selmethod.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/selvalue.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/selhelp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/selectioncollection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/sm_distance.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_compare.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_compare.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/sm_compare.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_merge.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_merge.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/sm_merge.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_insolidangle.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_insolidangle.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/sm_insolidangle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_position.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_position.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/sm_position.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_permute.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_permute.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/sm_permute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_keywords.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_keywords.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/sm_keywords.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_same.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_same.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/sm_same.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_simple.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_simple.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/sm_simple.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysissettings.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/analysissettings.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/analysissettings.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/symrec.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/symrec.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/symrec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/modules.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/cmdlinerunner.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/cmdlinerunner.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/cmdlinerunner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysismodule.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/analysismodule.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/analysismodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/freevolume.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/freevolume.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/modules/freevolume.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/analysismodule.h:49, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/modules/freevolume.h:45, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/modules/freevolume.cpp:44: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/analysismodule.h:49, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/modules/freevolume.h:45, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/modules/freevolume.cpp:44: /usr/include/c++/9/bits/stl_vector.h: In member function 'virtual void gmx::analysismodules::{anonymous}::FreeVolume::initAnalysis(const gmx::TrajectoryAnalysisSettings&, const gmx::TopologyInformation&)': /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/analysismodule.h:49, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/modules/freevolume.h:45, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/modules/freevolume.cpp:44: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/distance.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/distance.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/modules/distance.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/pairdist.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/pairdist.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/modules/pairdist.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/angle.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/angle.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/modules/angle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/rdf.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/rdf.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/modules/rdf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/trajectory.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/trajectory.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/modules/trajectory.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/surfacearea.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/surfacearea.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/modules/surfacearea.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/runnercommon.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/runnercommon.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/runnercommon.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/sasa.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/sasa.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/modules/sasa.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/analysismodule.h:49, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/modules/sasa.h:45, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/modules/sasa.cpp:46: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/analysismodule.h:49, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/modules/sasa.h:45, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/modules/sasa.cpp:46: /usr/include/c++/9/bits/stl_vector.h: In member function 'virtual void gmx::analysismodules::{anonymous}::Sasa::initAnalysis(const gmx::TrajectoryAnalysisSettings&, const gmx::TopologyInformation&)': /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/topologyinformation.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/topologyinformation.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/topologyinformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/select.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/select.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/modules/select.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/dump.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/tools/dump.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tools/dump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/check.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/tools/check.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tools/check.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/chargegroup.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/chargegroup.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/chargegroup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/report-methods.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/tools/report-methods.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tools/report-methods.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/conformation-utilities.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/conformation-utilities.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/conformation-utilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/convert_tpr.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/tools/convert_tpr.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tools/convert_tpr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nrnb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/network.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic_cg.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic_cg.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_generic_cg.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_generic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nonbonded.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nonbonded.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nonbonded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_free_energy.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/boxdeformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/boxdeformation.cpp: In member function 'void gmx::BoxDeformation::apply(gmx::ArrayRef >, real (*)[3], int64_t)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/boxdeformation.cpp:109:1: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 109 | BoxDeformation::apply(ArrayRef x, | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/calcmu.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/calcmu.cpp: In function 'void calc_mu(int, int, gmx::ArrayRef >, const real*, const real*, int, double*, double*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/calcmu.cpp:50:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 50 | void calc_mu(int start, int homenr, gmx::ArrayRef x, const real q[], const real qB[], | ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/calcvir.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/checkpointhandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/compute_io.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/constraintrange.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/constraintrange.cpp: In function 'void gmx::constr_recur(const t_blocka*, const InteractionLists&, gmx::ArrayRef, gmx_bool, int, int, int, int*, real, real, real*, int*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/constraintrange.cpp:60:13: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 60 | static void constr_recur(const t_blocka *at2con, | ^~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/calc_verletbuf.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/calc_verletbuf.cpp: In function 'real maxSigma(real, gmx::ArrayRef)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/calc_verletbuf.cpp:845:13: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 845 | static real maxSigma(real kT_fac, | ^~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/arrayref.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/calc_verletbuf.h:39, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/calc_verletbuf.cpp:37: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {VerletbufAtomtype}; _Tp = VerletbufAtomtype; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In function 'std::vector get_verlet_buffer_atomtypes(const gmx_mtop_t*, bool, int*)': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/ebin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/constr.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/constr.cpp: In function 't_blocka gmx::make_at2con(const gmx_moltype_t&, gmx::ArrayRef, gmx::FlexibleConstraintTreatment)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/constr.cpp:848:10: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 848 | t_blocka make_at2con(const gmx_moltype_t &moltype, | ^~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/broadcaststructs.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/broadcaststructs.h:48, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/broadcaststructs.cpp:40: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = gmx::BasicVector; _Alloc = gmx::Allocator, gmx::HostAllocationPolicy>]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector, gmx::Allocator, gmx::HostAllocationPolicy> >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::HostAllocationPolicy> > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/broadcaststructs.h:48, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/broadcaststructs.cpp:40: /usr/include/c++/9/bits/stl_vector.h: In function 'void broadcastStateWithoutDynamics(const t_commrec*, t_state*)': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::HostAllocationPolicy> > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/gmx_omp_nthreads.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/force.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/force.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/force.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/force.cpp: In function 'void sum_dhdl(gmx_enerdata_t*, gmx::ArrayRef, t_lambda*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/force.cpp:698:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 698 | void sum_dhdl(gmx_enerdata_t *enerd, gmx::ArrayRef lambda, t_lambda *fepvals) | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/coupling.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/coupling.cpp: In function 'void andersen_tcoupl(const t_inputrec*, int64_t, const t_commrec*, const t_mdatoms*, gmx::ArrayRef >, real, const gmx_bool*, const real*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/coupling.cpp:781:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 781 | void andersen_tcoupl(const t_inputrec *ir, int64_t step, | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/groupcoord.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/expanded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/md_support.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdatoms.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdatoms.h:43, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdatoms.cpp:39: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = gmx::Allocator]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdatoms.h:43, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdatoms.cpp:39: /usr/include/c++/9/bits/stl_vector.h: In function 'void gmx::changePinningPolicy(gmx::HostVector*, gmx::PinningPolicy) [with T = double]': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h: In member function 'void gmx::MDAtoms::resize(int)': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/lincs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/forcerec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdebin_bar.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdsetup.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdsetup.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdsetup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdoutf.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdoutf.cpp: In function 'void mdoutf_write_to_trajectory_files(FILE*, const t_commrec*, gmx_mdoutf_t, int, gmx_mtop_t*, int64_t, double, t_state*, t_state*, ObservablesHistory*, gmx::ArrayRef >)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdoutf.cpp:247:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 247 | void mdoutf_write_to_trajectory_files(FILE *fplog, const t_commrec *cr, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdoutf.cpp:269:31: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 269 | dd_collect_vec(cr->dd, state_local, makeArrayRef(state_local->x), globalXRef); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdoutf.cpp:274:31: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 274 | dd_collect_vec(cr->dd, state_local, makeArrayRef(state_local->v), globalVRef); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdoutf.cpp:280:27: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 280 | dd_collect_vec(cr->dd, state_local, f_local, gmx::arrayRefFromArray(reinterpret_cast(f_global), f_local.size())); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdebin.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdebin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_atomdata.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_atomdata.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_atomdata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/membed.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_grid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_grid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_grid.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_grid.cpp: In function 'void nbnxn_put_on_grid(nbnxn_search_t, int, const real (*)[3], int, const real*, const real*, const gmx::UpdateGroupsCog*, int, int, real, const int*, gmx::ArrayRef >, int, const int*, int, nbnxn_atomdata_t*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_grid.cpp:1416:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 1416 | void nbnxn_put_on_grid(nbnxn_search_t nbs, | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_grid.cpp: In function 'void nbnxn_put_on_grid_nonlocal(nbnxn_search_t, const gmx_domdec_zones_t*, const int*, gmx::ArrayRef >, int, nbnxn_atomdata_t*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_grid.cpp:1520:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 1520 | void nbnxn_put_on_grid_nonlocal(nbnxn_search_t nbs, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_grid.cpp:1536:26: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 1536 | nbnxn_put_on_grid(nbs, nbs->ePBC, nullptr, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 1537 | zone, c0, c1, | ~~~~~~~~~~~~~ 1538 | nullptr, | ~~~~~~~~ 1539 | zones->cg_range[zone], | ~~~~~~~~~~~~~~~~~~~~~~ 1540 | zones->cg_range[zone+1], | ~~~~~~~~~~~~~~~~~~~~~~~~ 1541 | -1, | ~~~ 1542 | atinfo, | ~~~~~~~ 1543 | x, | ~~ 1544 | 0, nullptr, | ~~~~~~~~~~~ 1545 | nb_kernel_type, | ~~~~~~~~~~~~~~~ 1546 | nbat); | ~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/perf_est.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nsgrid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nsgrid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nsgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_tuning.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_tuning.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_tuning.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/qm_gamess.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/qm_mopac.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/qm_orca.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/qm_gaussian.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/rbin.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/rbin.cpp: In function 'int add_binr(t_bin*, gmx::ArrayRef)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/rbin.cpp:103:5: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 103 | int add_binr(t_bin *b, gmx::ArrayRef r) | ^~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/rbin.cpp:103:5: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/rbin.cpp: In function 'void extract_binr(t_bin*, int, gmx::ArrayRef)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/rbin.cpp:160:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 160 | void extract_binr(t_bin *b, int index, gmx::ArrayRef r) | ^~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qmmm.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qmmm.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/qmmm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/resethandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ns.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/ns.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/ns.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/rf_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sighandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/shake.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/settle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/simulationsignal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_search.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_search.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_search.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/splitter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/stat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shellfc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/shellfc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/shellfc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/shellfc.h:43, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/shellfc.cpp:39: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = gmx::BasicVector; _Alloc = gmx::Allocator, gmx::AlignedAllocationPolicy>]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/shellfc.h:43, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/shellfc.cpp:39: /usr/include/c++/9/bits/stl_vector.h: In function 'void relax_shell_flexcon(FILE*, const t_commrec*, const gmx_multisim_t*, gmx_bool, gmx_enfrot*, int64_t, const t_inputrec*, gmx_bool, int, gmx_localtop_t*, gmx::Constraints*, gmx_enerdata_t*, t_fcdata*, t_state*, gmx::ArrayRefWithPadding >, real (*)[3], const t_mdatoms*, t_nrnb*, gmx_wallcycle_t, t_graph*, const gmx_groups_t*, gmx_shellfc_t*, t_forcerec*, gmx::PpForceWorkload*, double, real*, const gmx_vsite_t*, DdOpenBalanceRegionBeforeForceComputation, DdCloseBalanceRegionAfterForceComputation)': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/shellfc.cpp:1144:13: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 1144 | do_force(fplog, cr, ms, inputrec, nullptr, enforcedRotation, | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1145 | mdstep, nrnb, wcycle, top, groups, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1146 | state->box, state->x.arrayRefWithPadding(), &state->hist, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1147 | forceWithPadding[Min], force_vir, md, enerd, fcd, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1148 | state->lambda, graph, | ~~~~~~~~~~~~~~~~~~~~~ 1149 | fr, ppForceWorkload, vsite, mu_tot, t, nullptr, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1150 | (bDoNS ? GMX_FORCE_NS : 0) | shellfc_flags, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1151 | ddOpenBalanceRegion, ddCloseBalanceRegion); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/shellfc.cpp:1254:17: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 1254 | do_force(fplog, cr, ms, inputrec, nullptr, enforcedRotation, | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1255 | 1, nrnb, wcycle, | ~~~~~~~~~~~~~~~~ 1256 | top, groups, state->box, posWithPadding[Try], &state->hist, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1257 | forceWithPadding[Try], force_vir, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1258 | md, enerd, fcd, state->lambda, graph, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1259 | fr, ppForceWorkload, vsite, mu_tot, t, nullptr, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1260 | shellfc_flags, | ~~~~~~~~~~~~~~ 1261 | ddOpenBalanceRegion, ddCloseBalanceRegion); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/stophandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp: In function 'void computeSpecialForces(FILE*, const t_commrec*, const t_inputrec*, gmx::Awh*, gmx_enfrot*, int64_t, double, gmx_wallcycle_t, ForceProviders*, real (*)[3], gmx::ArrayRef >, const t_mdatoms*, real*, int, gmx::ForceWithVirial*, gmx_enerdata_t*, gmx_edsam*, gmx_bool)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:796:1: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 796 | computeSpecialForces(FILE *fplog, | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp: In function 'void put_atoms_in_box_omp(int, const real (*)[3], gmx::ArrayRef >)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:2722:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 2722 | void put_atoms_in_box_omp(int ePBC, const matrix box, gmx::ArrayRef x) | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp: In function 'void initialize_lambdas(FILE*, t_inputrec*, int*, gmx::ArrayRef, double*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:2875:13: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 2875 | extern void initialize_lambdas(FILE *fplog, t_inputrec *ir, int *fep_state, gmx::ArrayRef lambda, double *lam0) | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp: In function 'void init_md(FILE*, const t_commrec*, gmx::IMDOutputProvider*, t_inputrec*, const gmx_output_env_t*, const MdrunOptions&, double*, double*, t_state*, double*, t_nrnb*, gmx_mtop_t*, gmx_update_t**, gmx::BoxDeformation*, int, const t_filenm*, gmx_mdoutf**, t_mdebin**, real (*)[3], real (*)[3], real (*)[3], real (*)[3], real*, gmx_bool*, t_vcm**, gmx_wallcycle_t)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:2973:27: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 2973 | initialize_lambdas(fplog, ir, &globalState->fep_state, globalState->lambda, lam0); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:2973:27: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:2979:27: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 2979 | initialize_lambdas(fplog, ir, &tmpFepState, tmpLambda, lam0); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:2979:27: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp: In function 'void init_rerun(FILE*, const t_commrec*, gmx::IMDOutputProvider*, t_inputrec*, const gmx_output_env_t*, const MdrunOptions&, t_state*, double*, t_nrnb*, gmx_mtop_t*, int, const t_filenm*, gmx_mdoutf**, t_mdebin**, gmx_wallcycle_t)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:3047:27: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 3047 | initialize_lambdas(fplog, ir, &globalState->fep_state, globalState->lambda, lam0); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:3047:27: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:3053:27: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 3053 | initialize_lambdas(fplog, ir, &tmpFepState, tmpLambda, lam0); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:3053:27: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp: In function 'void do_force(FILE*, const t_commrec*, const gmx_multisim_t*, const t_inputrec*, gmx::Awh*, gmx_enfrot*, int64_t, t_nrnb*, gmx_wallcycle_t, gmx_localtop_t*, const gmx_groups_t*, real (*)[3], gmx::ArrayRefWithPadding >, history_t*, gmx::ArrayRefWithPadding >, real (*)[3], const t_mdatoms*, gmx_enerdata_t*, t_fcdata*, gmx::ArrayRef, t_graph*, t_forcerec*, gmx::PpForceWorkload*, const gmx_vsite_t*, real*, double, gmx_edsam*, int, DdOpenBalanceRegionBeforeForceComputation, DdCloseBalanceRegionAfterForceComputation)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:2120:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 2120 | void do_force(FILE *fplog, | ^~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:1175:30: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 1175 | nbnxn_put_on_grid(nbv->nbs.get(), fr->ePBC, box, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1176 | 0, vzero, box_diag, | ~~~~~~~~~~~~~~~~~~~ 1177 | nullptr, 0, mdatoms->homenr, -1, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1178 | fr->cginfo, x.unpaddedArrayRef(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1179 | 0, nullptr, | ~~~~~~~~~~~ 1180 | nbv->grp[eintLocal].kernel_type, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1181 | nbv->nbat); | ~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:1187:39: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 1187 | nbnxn_put_on_grid_nonlocal(nbv->nbs.get(), domdec_zones(cr->dd), | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1188 | fr->cginfo, x.unpaddedArrayRef(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1189 | nbv->grp[eintNonlocal].kernel_type, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1190 | nbv->nbat); | ~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:1187:39: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:1575:25: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 1575 | computeSpecialForces(fplog, cr, inputrec, awh, enforcedRotation, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1576 | step, t, wcycle, | ~~~~~~~~~~~~~~~~ 1577 | fr->forceProviders, box, x.unpaddedArrayRef(), mdatoms, lambda, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1578 | flags, &forceWithVirial, enerd, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1579 | make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' ed, bNS); | ~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:1627:22: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 1627 | dd_move_f(cr->dd, force.unpaddedArrayRef(), fr->fshift, wcycle); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:2048:25: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 2048 | computeSpecialForces(fplog, cr, inputrec, awh, enforcedRotation, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2049 | step, t, wcycle, | ~~~~~~~~~~~~~~~~ 2050 | fr->forceProviders, box, x.unpaddedArrayRef(), mdatoms, lambda, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2051 | flags, &forceWithVirial, enerd, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2052 | ed, bNS); | ~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:2059:22: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 2059 | dd_move_f(cr->dd, force.unpaddedArrayRef(), fr->fshift, wcycle); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:2070:26: note: parameter passing for argument of type 'const gmx::ArrayRef >' changed in GCC 7.1 2070 | dd_move_f(cr->dd, forceWithVirial.force_, nullptr, wcycle); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:1575:25: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 1575 | computeSpecialForces(fplog, cr, inputrec, awh, enforcedRotation, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1576 | step, t, wcycle, | ~~~~~~~~~~~~~~~~ 1577 | fr->forceProviders, box, x.unpaddedArrayRef(), mdatoms, lambda, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1578 | flags, &forceWithVirial, enerd, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1579 | ed, bNS); | ~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:1575:25: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:1575:25: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/tgroup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/trajectory_writing.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/trajectory_writing.cpp: In function 'void do_md_trajectory_writing(FILE*, t_commrec*, int, const t_filenm*, int64_t, int64_t, double, t_inputrec*, t_state*, t_state*, ObservablesHistory*, gmx_mtop_t*, t_forcerec*, gmx_mdoutf_t, t_mdebin*, gmx_ekindata_t*, gmx::ArrayRef >, gmx_bool, gmx_bool, gmx_bool, gmx_bool, gmx_bool)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/trajectory_writing.cpp:57:1: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 57 | do_md_trajectory_writing(FILE *fplog, | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/trajectory_writing.cpp:164:41: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 164 | mdoutf_write_to_trajectory_files(fplog, cr, outf, mdof_flags, top_global, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 | step, t, state, state_global, observablesHistory, f); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/vcm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/updategroupscog.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/updategroupscog.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/updategroupscog.cpp:45: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gmx::BasicVector&}; _Tp = gmx::BasicVector; _Alloc = std::allocator >]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/updategroupscog.cpp: In member function 'void gmx::UpdateGroupsCog::addCogs(gmx::ArrayRef, gmx::ArrayRef >)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/updategroupscog.cpp:85:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 85 | void UpdateGroupsCog::addCogs(gmx::ArrayRef globalAtomIndices, | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/updategroupscog.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/updategroupscog.cpp:45: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/updategroups.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/wall.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wnblist.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/wnblist.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/wnblist.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/update.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/update.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/update.cpp: In function 'void update_pcouple_after_coordinates(FILE*, int64_t, const t_inputrec*, const t_mdatoms*, const real (*)[3], const real (*)[3], const real (*)[3], const real (*)[3], t_state*, t_nrnb*, gmx_update_t*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/update.cpp:1781:27: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 1781 | upd->deform->apply(localX, state->box, step); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/update.cpp: In function 'gmx_bool update_randomize_velocities(const t_inputrec*, int64_t, const t_commrec*, const t_mdatoms*, gmx::ArrayRef >, const gmx_update_t*, const gmx::Constraints*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/update.cpp:1920:17: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 1920 | extern gmx_bool update_randomize_velocities(const t_inputrec *ir, int64_t step, const t_commrec *cr, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/update.cpp:1944:24: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 1944 | andersen_tcoupl(ir, step, cr, md, v, rate, | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 1945 | upd->sd->randomize_group, upd->sd->boltzfac); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/update.h:40, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/update.cpp:39: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = gmx::BasicVector; _Alloc = gmx::Allocator, gmx::AlignedAllocationPolicy>]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/update.h:40, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/update.cpp:39: /usr/include/c++/9/bits/stl_vector.h: In function 'void update_realloc(gmx_update_t*, int)': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h: In function 'gmx_update_t* init_update(const t_inputrec*, gmx::BoxDeformation*)': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/disre.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/disre.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/disre.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/listed-forces.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/listed-forces.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/listed-forces.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/bonded.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/bonded.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/bonded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/gpubonded-impl.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/gpubonded-impl.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/gpubonded-impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/listed-internal.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/listed-internal.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/listed-internal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/vsite.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/vsite.cpp: In function 'void constructVsitesGlobal(const gmx_mtop_t&, gmx::ArrayRef >)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/vsite.cpp:758:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 758 | void constructVsitesGlobal(const gmx_mtop_t &mtop, | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/vsite.cpp:758:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/idef.h:43, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/vsite.h:44, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/vsite.cpp:39: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = gmx::BasicVector; _Alloc = std::allocator >]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/idef.h:43, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/vsite.h:44, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/vsite.cpp:39: /usr/include/c++/9/bits/stl_vector.h: In function '_Z25split_vsites_over_threadsPK7t_ilistPK9t_iparamsPK9t_mdatomsP11gmx_vsite_t._omp_fn.0': /usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 957 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied-forces/electricfield.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/applied-forces/electricfield.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/applied-forces/electricfield.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/position-restraints.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/position-restraints.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/position-restraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/manage-threading.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/manage-threading.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/manage-threading.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/pairs.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/pairs.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/pairs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/restcbt.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/restcbt.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/restcbt.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/orires.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/orires.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/orires.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald-utils.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/ewald-utils.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/ewald-utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/ewald.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/calculate-spline-moduli.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/calculate-spline-moduli.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/calculate-spline-moduli.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/long-range-correction.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/long-range-correction.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/long-range-correction.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-gather.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gather.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-gather.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-grid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-grid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-grid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-load-balancing.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-load-balancing.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-load-balancing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-pp.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-pp.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-pp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-spline-work.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-spline-work.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-spline-work.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-redistribute.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-redistribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-gpu-program.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gpu-program.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-gpu-program.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-gpu-program-impl.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gpu-program-impl.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-gpu-program-impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-solve.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-solve.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-solve.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-only.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-only.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-only.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-only.cpp:72: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = gmx::Allocator]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-only.cpp:72: /usr/include/c++/9/bits/stl_vector.h: In function 'void gmx::changePinningPolicy(gmx::HostVector*, gmx::PinningPolicy) [with T = double]': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-only.cpp:72: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = gmx::BasicVector; _Alloc = gmx::Allocator, gmx::HostAllocationPolicy>]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector, gmx::Allocator, gmx::HostAllocationPolicy> >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::HostAllocationPolicy> > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-only.cpp:72: /usr/include/c++/9/bits/stl_vector.h: In function 'void gmx::changePinningPolicy(gmx::HostVector*, gmx::PinningPolicy) [with T = gmx::BasicVector]': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::HostAllocationPolicy> > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h: In function 'int gmx_pmeonly(gmx_pme_t*, const t_commrec*, t_nrnb*, gmx_wallcycle*, gmx_walltime_accounting_t, t_inputrec*, PmeRunMode)': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::HostAllocationPolicy> > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fft/calcgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fft/fft.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-spread.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-spread.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-spread.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/clfftinitializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fft/parallel_3dfft.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fft/fft_fftw3.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/hostallocator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/gpu_hw_info.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/hardware/gpu_hw_info.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/gpu_hw_info.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fft/fft5d.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/gpu_utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/detecthardware.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/identifyavx512fmaunits.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/integrator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/integrator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/integrator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/printhardware.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/legacymdrunoptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/cpuinfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/logging.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/logging.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/logging.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/multisim.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/multisim.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/multisim.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/hardwaretopology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/replicaexchange.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/rerun.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/awh.h:69, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/rerun.cpp:52: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = gmx::BasicVector; _Alloc = gmx::Allocator, gmx::AlignedAllocationPolicy>]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/awh.h:69, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/rerun.cpp:52: /usr/include/c++/9/bits/stl_vector.h: In member function 'void gmx::Integrator::do_rerun()': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/rerun.cpp:580:21: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 580 | do_force(fplog, cr, ms, ir, awh, enforcedRotation, | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 | step, nrnb, wcycle, top, groups, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 | state->box, state->x.arrayRefWithPadding(), &state->hist, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 | f.arrayRefWithPadding(), force_vir, mdatoms, enerd, fcd, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 | state->lambda, graph, | ~~~~~~~~~~~~~~~~~~~~~ 585 | fr, ppForceWorkload, vsite, mu_tot, t, ed, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 | GMX_FORCE_NS | force_flags, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 | ddOpenBalanceRegion, ddCloseBalanceRegion); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/rerun.cpp:597:37: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 597 | do_md_trajectory_writing(fplog, cr, nfile, fnm, step, step_rel, t, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 | ir, state, state_global, observablesHistory, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 | top_global, fr, | ~~~~~~~~~~~~~~~ 600 | outf, mdebin, ekind, f, | ~~~~~~~~~~~~~~~~~~~~~~~ 601 | isCheckpointingStep, doRerun, isLastStep, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 | mdrunOptions.writeConfout, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 603 | bSumEkinhOld); | ~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/rerun.cpp:661:21: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 661 | sum_dhdl(enerd, state->lambda, ir->fepvals); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/simulationcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/mimic.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/awh.h:69, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/mimic.cpp:53: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = gmx::BasicVector; _Alloc = gmx::Allocator, gmx::AlignedAllocationPolicy>]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = gmx::BasicVector; _Alloc = gmx::Allocator, gmx::HostAllocationPolicy>]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector, gmx::Allocator, gmx::HostAllocationPolicy> >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::HostAllocationPolicy> > >'} changed in GCC 7.1 In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/awh.h:69, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/mimic.cpp:53: /usr/include/c++/9/bits/stl_vector.h: In member function 'void gmx::Integrator::do_mimic()': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/mimic.cpp:465:21: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 465 | do_force(fplog, cr, ms, ir, awh, enforcedRotation, | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 | step, nrnb, wcycle, top, groups, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 | state->box, state->x.arrayRefWithPadding(), &state->hist, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 | f.arrayRefWithPadding(), force_vir, mdatoms, enerd, fcd, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 | state->lambda, graph, | ~~~~~~~~~~~~~~~~~~~~~ 470 | fr, ppForceWorkload, vsite, mu_tot, t, ed, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 | GMX_FORCE_NS | force_flags, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 | ddOpenBalanceRegion, ddCloseBalanceRegion); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/mimic.cpp:482:37: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 482 | do_md_trajectory_writing(fplog, cr, nfile, fnm, step, step_rel, t, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 | ir, state, state_global, observablesHistory, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 | top_global, fr, | ~~~~~~~~~~~~~~~ 485 | outf, mdebin, ekind, f, | ~~~~~~~~~~~~~~~~~~~~~~~ 486 | isCheckpointingStep, doRerun, isLastStep, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 | mdrunOptions.writeConfout, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 | bSumEkinhOld); | ~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/awh.h:69, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/mimic.cpp:53: /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::HostAllocationPolicy> > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/mimic.cpp:544:31: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 544 | dd_collect_vec(cr->dd, state, flocal, ftemp); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/mimic.cpp:554:45: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 554 | mimicCommunicator.sendForces(ftemp, state_global->natoms); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/mimic.cpp:569:21: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 569 | sum_dhdl(enerd, state->lambda, ir->fepvals); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/md.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/md.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/md.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/awh.h:69, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/md.cpp:54: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = gmx::BasicVector; _Alloc = gmx::Allocator, gmx::AlignedAllocationPolicy>]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/awh.h:69, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/md.cpp:54: /usr/include/c++/9/bits/stl_vector.h: In member function 'void gmx::Integrator::do_md()': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/md.cpp:880:21: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 880 | do_force(fplog, cr, ms, ir, awh.get(), enforcedRotation, | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 881 | step, nrnb, wcycle, top, groups, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 882 | state->box, state->x.arrayRefWithPadding(), &state->hist, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 883 | f.arrayRefWithPadding(), force_vir, mdatoms, enerd, fcd, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 884 | state->lambda, graph, | ~~~~~~~~~~~~~~~~~~~~~ 885 | fr, ppForceWorkload, vsite, mu_tot, t, ed ? ed->getLegacyED() : nullptr, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 886 | (bNS ? GMX_FORCE_NS : 0) | force_flags, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 887 | ddOpenBalanceRegion, ddCloseBalanceRegion); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/md.cpp:1031:25: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 1031 | sum_dhdl(enerd, state->lambda, ir->fepvals); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/md.cpp:1056:33: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 1056 | do_md_trajectory_writing(fplog, cr, nfile, fnm, step, step_rel, t, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1057 | ir, state, state_global, observablesHistory, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1058 | top_global, fr, | ~~~~~~~~~~~~~~~ 1059 | outf, mdebin, ekind, f, | ~~~~~~~~~~~~~~~~~~~~~~~ 1060 | checkpointHandler->isCheckpointingStep(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1061 | bRerunMD, bLastStep, | ~~~~~~~~~~~~~~~~~~~~ 1062 | mdrunOptions.writeConfout, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 1063 | bSumEkinhOld); | ~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/md.cpp:1094:55: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 1094 | bIfRandomize = update_randomize_velocities(ir, step, cr, mdatoms, state->v, upd, constr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/md.cpp:1304:21: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 1304 | sum_dhdl(enerd, state->lambda, ir->fepvals); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrunutility/handlerestart.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/minimize.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/minimize.cpp: In function 'void write_em_traj(FILE*, const t_commrec*, gmx_mdoutf_t, gmx_bool, gmx_bool, const char*, gmx_mtop_t*, t_inputrec*, int64_t, em_state_t*, t_state*, ObservablesHistory*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/minimize.cpp:551:37: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 551 | mdoutf_write_to_trajectory_files(fplog, cr, outf, mdof_flags, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 | top_global, step, static_cast(step), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 | &state->s, state_global, observablesHistory, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 | state->f); | ~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/minimize.cpp:564:31: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 564 | dd_collect_vec(cr->dd, &state->s, makeArrayRef(state->s.x), globalXRef); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/minimize.cpp: In member function 'void {anonymous}::EnergyEvaluator::run(em_state_t*, real*, real (*)[3], real (*)[3], int64_t, gmx_bool)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/minimize.cpp:872:13: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 872 | do_force(fplog, cr, ms, inputrec, nullptr, nullptr, | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 873 | count, nrnb, wcycle, top, &top_global->groups, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 874 | ems->s.box, ems->s.x.arrayRefWithPadding(), &ems->s.hist, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 875 | ems->f.arrayRefWithPadding(), force_vir, mdAtoms->mdatoms(), enerd, fcd, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 876 | ems->s.lambda, graph, fr, ppForceWorkload, vsite, mu_tot, t, nullptr, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 877 | GMX_FORCE_STATECHANGED | GMX_FORCE_ALLFORCES | | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 878 | GMX_FORCE_VIRIAL | GMX_FORCE_ENERGY | | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 879 | (bNS ? GMX_FORCE_NS : 0), | ~~~~~~~~~~~~~~~~~~~~~~~~~ 880 | DOMAINDECOMP(cr) ? | ~~~~~~~~~~~~~~~~~~ 881 | DdOpenBalanceRegionBeforeForceComputation::yes : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 882 | DdOpenBalanceRegionBeforeForceComputation::no, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 883 | DOMAINDECOMP(cr) ? | ~~~~~~~~~~~~~~~~~~ 884 | DdCloseBalanceRegionAfterForceComputation::yes : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 885 | DdCloseBalanceRegionAfterForceComputation::no); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/minimize.cpp:939:13: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 939 | sum_dhdl(enerd, ems->s.lambda, inputrec->fepvals); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/minimize.cpp:54: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = gmx::BasicVector; _Alloc = gmx::Allocator, gmx::AlignedAllocationPolicy>]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/minimize.cpp: In function 'void init_em(FILE*, const gmx::MDLogger&, const char*, const t_commrec*, const gmx_multisim_t*, gmx::IMDOutputProvider*, t_inputrec*, const MdrunOptions&, t_state*, gmx_mtop_t*, em_state_t*, gmx_localtop_t**, t_nrnb*, real*, t_forcerec*, gmx_enerdata_t**, t_graph**, gmx::MDAtoms*, gmx_global_stat**, gmx_vsite_t*, gmx::Constraints*, gmx_shellfc_t**, int, const t_filenm*, gmx_mdoutf**, t_mdebin**, gmx_wallcycle_t)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/minimize.cpp:377:27: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 377 | initialize_lambdas(fplog, ir, &(state_global->fep_state), state_global->lambda, nullptr); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/minimize.cpp:377:27: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/minimize.cpp:54: /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/minimize.cpp: In member function 'void gmx::Integrator::do_lbfgs()': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/minimize.cpp:1935:41: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 1935 | mdoutf_write_to_trajectory_files(fplog, cr, outf, mdof_flags, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1936 | top_global, step, static_cast(step), &ems.s, state_global, observablesHistory, ems.f); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/minimize.cpp:54: /usr/include/c++/9/bits/stl_vector.h: In function 'bool do_em_step(const t_commrec*, t_inputrec*, t_mdatoms*, em_state_t*, real, const gmx::PaddedVector >*, em_state_t*, gmx::Constraints*, int64_t)': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrunutility/threadaffinity.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/mdmodules.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrunutility/mdmodules.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrunutility/mdmodules.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/abstractsection.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/abstractsection.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/abstractsection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/behaviorcollection.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/behaviorcollection.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/behaviorcollection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/tpi.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/filenm.h:48, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/tpi.cpp:55: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = gmx::BasicVector; _Alloc = gmx::Allocator, gmx::AlignedAllocationPolicy>]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/filenm.h:48, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/tpi.cpp:55: /usr/include/c++/9/bits/stl_vector.h: In member function 'void gmx::Integrator::do_tpi()': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/tpi.cpp:647:21: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 647 | do_force(fplog, cr, ms, inputrec, nullptr, nullptr, | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 | step, nrnb, wcycle, top, &top_global->groups, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 | state_global->box, state_global->x.arrayRefWithPadding(), &state_global->hist, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 | f.arrayRefWithPadding(), force_vir, mdatoms, enerd, fcd, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 | state_global->lambda, | ~~~~~~~~~~~~~~~~~~~~~ 652 | nullptr, fr, ppForceWorkload, nullptr, mu_tot, t, nullptr, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 653 | GMX_FORCE_NONBONDED | GMX_FORCE_ENERGY | | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 654 | (bNS ? GMX_FORCE_DYNAMICBOX | GMX_FORCE_NS : 0) | | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 | (bStateChanged ? GMX_FORCE_STATECHANGED : 0), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 | DdOpenBalanceRegionBeforeForceComputation::no, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 | DdCloseBalanceRegionAfterForceComputation::no); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/abstractoption.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/abstractoption.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/abstractoption.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/runner.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/filenm.h:48, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/runner.h:50, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/runner.cpp:46: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = gmx::BasicVector; _Alloc = gmx::Allocator, gmx::HostAllocationPolicy>]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector, gmx::Allocator, gmx::HostAllocationPolicy> >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::HostAllocationPolicy> > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/filenm.h:48, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/runner.h:50, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/runner.cpp:46: /usr/include/c++/9/bits/stl_vector.h: In function 'void gmx::changePinningPolicy(gmx::HostVector*, gmx::PinningPolicy) [with T = gmx::BasicVector]': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::HostAllocationPolicy> > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/runner.cpp: In member function 'int gmx::Mdrunner::mdrunner()': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/runner.cpp:922:43: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 922 | cr->dd = init_domain_decomposition(mdlog, cr, domdecOptions, mdrunOptions, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 923 | &mtop, inputrec, | ~~~~~~~~~~~~~~~~ 924 | box, positionsFromStatePointer(globalState.get()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 925 | &atomSets); | ~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/runner.cpp:1278:38: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 1278 | constructVsitesGlobal(mtop, globalState->x); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/filenameoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/filenameoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/filenameoptionmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsection.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsection.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/optionsection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/options.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/options.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/options.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsassigner.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsassigner.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/optionsassigner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsvisitor.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsvisitor.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/optionsvisitor.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/filenameoption.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/filenameoption.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/filenameoption.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/restraint/manager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/restraint/manager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/restraint/manager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/timeunitmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/timeunitmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/timeunitmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/restraint/restraintmdmodule.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/restraint/restraintpotential.h:60, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/restraint/restraintmdmodule.h:49, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/restraint/restraintmdmodule.cpp:38: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const int&}; _Tp = gmx::Site; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In constructor 'gmx::RestraintForceProvider::RestraintForceProvider(std::shared_ptr, const std::vector&)': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [100%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/findallgputasks.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/findallgputasks.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/findallgputasks.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/decidegpuusage.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/decidegpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/decidegpuusage.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [100%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/reportgpuusage.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/reportgpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/reportgpuusage.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/treesupport.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/treesupport.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/treesupport.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [100%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/resourcedivision.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/resourcedivision.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/resourcedivision.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [100%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/usergpuids.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/usergpuids.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/usergpuids.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [100%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/taskassignment.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/taskassignment.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/taskassignment.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [100%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectory/trajectoryframe.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [100%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/utility/baseversion-gen.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [100%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectory/energyframe.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [100%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mimic/MimicUtils.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mimic/MimicUtils.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mimic/MimicUtils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [100%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mimic/MimicCommunicator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mimic/MimicCommunicator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mimic/MimicCommunicator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/hostallocator.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mimic/MimicCommunicator.h:39, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mimic/MimicCommunicator.cpp:37: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mimic/MimicCommunicator.cpp: In member function 'void gmx::MimicCommunicator::sendForces(gmx::ArrayRef >, int)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mimic/MimicCommunicator.cpp:260:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 260 | void gmx::MimicCommunicator::sendForces(gmx::ArrayRef forces, int natoms) | ^~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/basicoptions.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/basicoptions.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.h:50, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.cpp:44: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.h:50, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.cpp:44: /usr/include/c++/9/bits/stl_vector.h: In member function 'virtual void gmx::DoubleOptionStorage::processSetValues(gmx::OptionStorageTemplate::ValueList*)': /usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 957 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.h:50, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.cpp:44: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.h:50, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.cpp:44: /usr/include/c++/9/bits/stl_vector.h: In member function 'void gmx::OptionStorageTemplate::addValue(const T&) [with T = double]': /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h: In member function 'void gmx::OptionValueStoreNull::append(const T&) [with T = double]': /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h: In member function 'void gmx::OptionValueStoreVector::append(const T&) [with T = double]': /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.h:50, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.cpp:44: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.h:50, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.cpp:44: /usr/include/c++/9/bits/stl_vector.h: In member function 'void gmx::OptionStorageTemplate::addValue(const T&) [with T = long long int]': /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h: In member function 'void gmx::OptionValueStoreVector::append(const T&) [with T = long long int]': /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h: In member function 'void gmx::OptionValueStoreNull::append(const T&) [with T = long long int]': /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [100%] Linking CXX shared library ../../lib/libgromacs_d.so cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/cmake -E cmake_link_script CMakeFiles/libgromacs.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libgromacs_d.so.4 -o ../../lib/libgromacs_d.so.4.0.0 @CMakeFiles/libgromacs.dir/objects1.rsp /usr/lib/libtng_io.so.1.8.2 /usr/lib/libhwloc.so -ldl -lrt /usr/lib/libfftw3.so -lopenblas -lopenblas -lpthread -fopenmp -lm /usr/lib/liblmfit.so cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/cmake -E cmake_symlink_library ../../lib/libgromacs_d.so.4.0.0 ../../lib/libgromacs_d.so.4 ../../lib/libgromacs_d.so make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [100%] Built target libgromacs make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' /usr/bin/make -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/depend /usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/programs /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/CMakeFiles/gmx.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/CMakeFiles/gmx.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/CMakeFiles/gmx.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/CMakeFiles/gmx.dir/depend.internal". Scanning dependencies of target gmx make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' /usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/share/template /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/share/template /builddir/build/BUILD/gromacs-2019.6/serial_d/share/template/CMakeFiles/template.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/share/template/CMakeFiles/template.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/share/template/CMakeFiles/template.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/share/template/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/share/template/CMakeFiles/template.dir/depend.internal". Scanning dependencies of target template make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' /usr/bin/make -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [100%] Building CXX object src/programs/CMakeFiles/gmx.dir/gmx.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/gmx.dir/gmx.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/gmx.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [100%] Building CXX object src/programs/CMakeFiles/gmx.dir/legacymodules.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/gmx.dir/legacymodules.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/legacymodules.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [100%] Linking CXX executable ../../bin/gmx_d cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmx.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now 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CMakeFiles/view_objlib.dir/view/xutil.cpp.o -o ../../bin/gmx_d ../../lib/libgromacs_d.so.4.0.0 -fopenmp /usr/lib/libX11.so -lm make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [100%] Built target gmx make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [100%] Building CXX object share/template/CMakeFiles/template.dir/template.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/share/template && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/template.dir/template.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/share/template/template.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [100%] Linking CXX executable ../../bin/template cd /builddir/build/BUILD/gromacs-2019.6/serial_d/share/template && /usr/bin/cmake -E cmake_link_script CMakeFiles/template.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/template.dir/template.cpp.o -o ../../bin/template ../../lib/libgromacs_d.so.4.0.0 -fopenmp -lm make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [100%] Built target template make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019.6/serial_d/CMakeFiles 0 + popd ~/build/BUILD/gromacs-2019.6 + test -n '' + for mpi in '' mpich openmpi + test -n mpich + module load mpi/mpich-arm ++ /usr/share/lmod/lmod/libexec/lmod sh load mpi/mpich-arm + eval '__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib/mpich/lib:1;' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH=/usr/lib/mpich/lib;' export 'LD_LIBRARY_PATH;' '__LMOD_REF_COUNT_LOADEDMODULES=mpi/mpich-arm:1;' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES=mpi/mpich-arm;' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/man/mpich-arm:1\;/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=:/usr/share/man/mpich-arm:/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' 'MPI_BIN=/usr/lib/mpich/bin;' export 'MPI_BIN;' 'MPI_COMPILER=mpich-arm;' export 'MPI_COMPILER;' 'MPI_FORTRAN_MOD_DIR=/usr/lib/gfortran/modules/mpich;' export 'MPI_FORTRAN_MOD_DIR;' 'MPI_HOME=/usr/lib/mpich;' export 'MPI_HOME;' 'MPI_INCLUDE=/usr/include/mpich-arm;' export 'MPI_INCLUDE;' 'MPI_LIB=/usr/lib/mpich/lib;' export 'MPI_LIB;' 'MPI_MAN=/usr/share/man/mpich-arm;' export 'MPI_MAN;' 'MPI_PYTHON2_SITEARCH=/usr/lib/python2.7/site-packages/mpich;' export 'MPI_PYTHON2_SITEARCH;' 'MPI_PYTHON3_SITEARCH=/usr/lib/python3.7/site-packages/mpich;' export 'MPI_PYTHON3_SITEARCH;' 'MPI_PYTHON_SITEARCH=/usr/lib/python2.7/site-packages/mpich;' export 'MPI_PYTHON_SITEARCH;' 'MPI_SUFFIX=_mpich;' export 'MPI_SUFFIX;' 'MPI_SYSCONFIG=/etc/mpich-arm;' export 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/lib/mpich/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/lib/mpich/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib/mpich/lib/pkgconfig:1\;/usr/lib/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=/usr/lib/mpich/lib/pkgconfig::/usr/lib/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' '__LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/mpich-arm:1;' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_=/usr/share/modulefiles/mpi/mpich-arm;' export '_LMFILES_;' '_ModuleTable001_=X01vZHVsZVRhYmxlXz17WyJNVHZlcnNpb24iXT0zLFsiY19yZWJ1aWxkVGltZSJdPWZhbHNlLFsiY19zaG9ydFRpbWUiXT1mYWxzZSxkZXB0aFQ9e30sZmFtaWx5PXt9LG1UPXttcGk9e1siZm4iXT0iL3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9tcGkvbXBpY2gtYXJtIixbImZ1bGxOYW1lIl09Im1waS9tcGljaC1hcm0iLFsibG9hZE9yZGVyIl09MSxwcm9wVD17fSxbInN0YWNrRGVwdGgiXT0wLFsic3RhdHVzIl09ImFjdGl2ZSIsWyJ1c2VyTmFtZSJdPSJtcGkvbXBpY2gtYXJtIix9LH0sbXBhdGhBPXsiL2V0Yy9tb2R1bGVmaWxlcyIsIi91c3Ivc2hhcmUvbW9kdWxlZmlsZXMiLCIvdXNyL3NoYXJlL21vZHVsZWZpbGVzL0xpbnV4IiwiL3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9D;' export '_ModuleTable001_;' '_ModuleTable002_=b3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib/mpich/lib:1 ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ LD_LIBRARY_PATH=/usr/lib/mpich/lib ++ export LD_LIBRARY_PATH ++ __LMOD_REF_COUNT_LOADEDMODULES=mpi/mpich-arm:1 ++ export __LMOD_REF_COUNT_LOADEDMODULES ++ LOADEDMODULES=mpi/mpich-arm ++ export LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH='/usr/share/man/mpich-arm:1;/usr/share/lmod/lmod/share/man:1' ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=:/usr/share/man/mpich-arm:/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ MPI_BIN=/usr/lib/mpich/bin ++ export MPI_BIN ++ MPI_COMPILER=mpich-arm ++ export MPI_COMPILER ++ MPI_FORTRAN_MOD_DIR=/usr/lib/gfortran/modules/mpich ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib/mpich ++ export MPI_HOME ++ MPI_INCLUDE=/usr/include/mpich-arm ++ export MPI_INCLUDE ++ MPI_LIB=/usr/lib/mpich/lib ++ export MPI_LIB ++ MPI_MAN=/usr/share/man/mpich-arm ++ export MPI_MAN ++ MPI_PYTHON2_SITEARCH=/usr/lib/python2.7/site-packages/mpich ++ export MPI_PYTHON2_SITEARCH ++ MPI_PYTHON3_SITEARCH=/usr/lib/python3.7/site-packages/mpich ++ export MPI_PYTHON3_SITEARCH ++ MPI_PYTHON_SITEARCH=/usr/lib/python2.7/site-packages/mpich ++ export MPI_PYTHON_SITEARCH ++ MPI_SUFFIX=_mpich ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/mpich-arm ++ export MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/lib/mpich/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/lib/mpich/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib/mpich/lib/pkgconfig:1;/usr/lib/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=/usr/lib/mpich/lib/pkgconfig::/usr/lib/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ __LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/mpich-arm:1 ++ export __LMOD_REF_COUNT__LMFILES_ ++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-arm ++ export _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ~/build/BUILD/gromacs-2019.6/mpich_d ~/build/BUILD/gromacs-2019.6 ++ _ModuleTable002_=b3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ== ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + mkdir -p mpich_d + pushd mpich_d + test -z mpich + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -I/usr/lib/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -I/usr/lib/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS ++ test -n mpich ++ echo -DGMX_BUILD_MDRUN_ONLY:BOOL=ON -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_BINARY_SUFFIX=_mpich_d -DGMX_LIBS_SUFFIX=_mpich_d -DCMAKE_INSTALL_BINDIR=/usr/lib/mpich/bin ++ test -n _d ++ echo -DGMX_DOUBLE:BOOL=ON + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_TESTING:BOOL=ON -DCMAKE_SKIP_RPATH:BOOL=ON -DCMAKE_SKIP_BUILD_RPATH:BOOL=ON -DGMX_BLAS_USER=openblas -DGMX_BUILD_UNITTESTS:BOOL=ON -DGMX_EXTERNAL_LMFIT:BOOL=ON -DGMX_USE_LMFIT=external -DGMX_EXTERNAL_TNG:BOOL=ON -DGMX_EXTERNAL_TINYXML2:BOOL=OFF -DGMX_LAPACK_USER=openblas -DGMX_USE_RDTSCP=OFF -DGMX_SIMD=None ' ' -DGMX_BUILD_MDRUN_ONLY:BOOL=ON -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_BINARY_SUFFIX=_mpich_d -DGMX_LIBS_SUFFIX=_mpich_d -DCMAKE_INSTALL_BINDIR=/usr/lib/mpich/bin -DGMX_DOUBLE:BOOL=ON .. -- The C compiler identification is GNU 9.2.1 -- The CXX compiler identification is GNU 9.2.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Performing Test CXXFLAG_STD_CXX0X -- Performing Test CXXFLAG_STD_CXX0X - Success -- Performing Test CXX11_SUPPORTED -- Performing Test CXX11_SUPPORTED - Success -- Performing Test CXX11_STDLIB_PRESENT -- Performing Test CXX11_STDLIB_PRESENT - Success CMake Warning at cmake/gmxManageGPU.cmake:53 (message): GPU acceleration is not available in double precision, disabled! Call Stack (most recent call first): CMakeLists.txt:226 (include) -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file regex.h -- Looking for include file regex.h - found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Looking for fedisableexcept in m -- Looking for fedisableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - not found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - not found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - not supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Check if the system is big endian -- Searching 16 bit integer -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- Found MPI_C: /usr/lib/mpich/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/mpich/lib/libmpicxx.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Checking for MPI_IN_PLACE -- Performing Test MPI_IN_PLACE_COMPILE_OK -- Performing Test MPI_IN_PLACE_COMPILE_OK - Success -- Checking for MPI_IN_PLACE - yes -- hwloc version: -- Found Hwloc: /usr/lib/libhwloc.so (found suitable version "2.0.4", minimum required is "1.5") -- Looking for C++ include pthread.h -- Looking for C++ include pthread.h - found -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Detected build CPU vendor - ARM -- Detected build CPU brand - ARMv7 Processor rev 2 (v7l) -- Detected build CPU family - 7 -- Detected build CPU model - 3 -- Detected build CPU stepping - 2 -- Detected build CPU features - neon -- Disabling RDTSCP support -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present with _FILE_OFFSET_BITS=64 -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Looking for C++ include regex -- Looking for C++ include regex - found -- Checking for system XDR support -- Checking for system XDR support - not present -- SIMD instructions disabled -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- Checking for module 'fftw3' -- Found fftw3, version 3.3.8 -- Looking for fftw_plan_many_dft in /usr/lib/libfftw3.so -- Looking for fftw_plan_many_dft in /usr/lib/libfftw3.so - found -- Looking for fftw_plan_many_dft_r2c in /usr/lib/libfftw3.so -- Looking for fftw_plan_many_dft_r2c in /usr/lib/libfftw3.so - found -- Looking for fftw_plan_many_dft_c2r in /usr/lib/libfftw3.so -- Looking for fftw_plan_many_dft_c2r in /usr/lib/libfftw3.so - found -- Looking for fftw_have_simd_sse in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_sse in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_sse in /usr/lib/libfftw3.so -- Looking for fftw_have_sse in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_simd_sse2 in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_sse2 in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_sse2 in /usr/lib/libfftw3.so -- Looking for fftw_have_sse2 in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_simd_avx in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_avx in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_simd_avx2 in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_avx2 in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_simd_avx2_128 in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_avx2_128 in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_simd_avx512 in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_avx512 in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_simd_avx_128_fma in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_avx_128_fma in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_simd_avx_512 in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_avx_512 in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_simd_kcvi in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_kcvi in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_simd_altivec in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_altivec in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_simd_neon in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_neon in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_simd_vsx in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_vsx in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_simd_altivec in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_altivec in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_altivec in /usr/lib/libfftw3.so -- Looking for fftw_have_altivec in /usr/lib/libfftw3.so - not found -- Using external FFT library - FFTW3 -- Checking that user BLAS library openblas works -- Looking for dgemm_ -- Looking for dgemm_ - found -- Checking that user LAPACK library openblas works -- Looking for cheev_ -- Looking for cheev_ - found -- Checking for dlopen -- Performing Test HAVE_DLOPEN -- Performing Test HAVE_DLOPEN - Success -- Checking for dlopen - found -- GROMACS only supports plugins in a build that uses shared libraries, which can be disabled for various reasons. BUILD_SHARED_LIBS=on and a toolchain that supports dynamic linking is required. (Hint: GMX_PREFER_STATIC_LIBS and GMX_BUILD_MDRUN_ONLY can influence the default BUILD_SHARED_LIBS, so if you need plugins, reconsider those choices.) -- Not using dynamic plugins (e.g VMD-supported file formats) -- Using manually set binary suffix: "_mpich_d" -- Using manually set library suffix: "_mpich_d" -- Performing Test HAS_NO_UNUSED_VARIABLE -- Performing Test HAS_NO_UNUSED_VARIABLE - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Performing Test HAS_NO_MISSING_DECL -- Performing Test HAS_NO_MISSING_DECL - Success -- Performing Test HAS_NO_MISSING_PROTO -- Performing Test HAS_NO_MISSING_PROTO - Failed -- Performing Test HAS_NO_MSVC_UNUSED -- Performing Test HAS_NO_MSVC_UNUSED - Failed -- Performing Test HAS_DECL_IN_SOURCE -- Performing Test HAS_DECL_IN_SOURCE - Failed -- Performing Test LMFIT_LINKS_OK -- Performing Test LMFIT_LINKS_OK - Success -- Found lmfit: /usr/include (found version "8.2") -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE GMX_EXTERNAL_LMFIT INCLUDE_INSTALL_DIR LIB_INSTALL_DIR SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/gromacs-2019.6/mpich_d + /usr/bin/make -O -j5 V=1 VERBOSE=1 /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2019.6 -B/builddir/build/BUILD/gromacs-2019.6/mpich_d --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019.6/mpich_d/CMakeFiles /builddir/build/BUILD/gromacs-2019.6/mpich_d/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' cd /builddir/build/BUILD/gromacs-2019.6/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/programs /builddir/build/BUILD/gromacs-2019.6/mpich_d /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/programs /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/programs/CMakeFiles/mdrun_objlib.dir/depend.internal". 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Scanning dependencies of target libgromacs_external make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' cd /builddir/build/BUILD/gromacs-2019.6/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/mpich_d /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/CMakeFiles/libgromacs_generated.dir/depend.internal". 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-Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/matrix.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/matrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src 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Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/sparsematrix.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/sparsematrix.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/sparsematrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/errhandler.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/tmpi_malloc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/nrjac.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/nrjac.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/nrjac.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/atomic.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/atomic.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/atomic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/lock.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/lock.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/lock.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/pthreads.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/pthreads.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/system_error.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/system_error.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/system_error.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 1%] Building CXX object src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/mdrun.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 2%] Built target mdrun_objlib make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 3%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 3%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 3%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 3%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/gmx_arpack.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/gmx_arpack.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp In file included from /usr/include/string.h:495, from /usr/include/c++/9/cstring:42, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:41: In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2046:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2050:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2054:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2058:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2022:25: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2074:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2089:25: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4910:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4914:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4918:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4922:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_smake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' trncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4886:25: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4938:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4953:25: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dseupd_(int*, const char*, int*, double*, double*, int*, double*, const char*, int*, const char*, int*, double*, double*, int*, double*, int*, int*, int*, double*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2507:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dseupd_(int*, const char*, int*, double*, double*, int*, double*, const char*, int*, const char*, int*, double*, double*, int*, double*, int*, int*, int*, double*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2503:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dseupd_(int*, const char*, int*, double*, double*, int*, double*, const char*, int*, const char*, int*, double*, double*, int*, double*, int*, int*, int*, double*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2499:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dseupd_(int*, const char*, int*, double*, double*, int*, double*, const char*, int*, const char*, int*, double*, double*, int*, double*, int*, int*, int*, double*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2495:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void sseupd_(int*, const char*, int*, float*, float*, int*, float*, const char*, int*, const char*, int*, float*, float*, int*, float*, int*, int*, int*, float*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:5371:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void sseupd_(int*, const char*, int*, float*, float*, int*, float*, const char*, int*, const char*, int*, float*, float*, int*, float*, int*, int*, int*, float*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:5367:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void sseupd_(int*, const char*, int*, float*, float*, int*, float*, const char*, int*, const char*, int*, float*, float*, int*, float*, int*, int*, int*, float*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:5363:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void sseupd_(int*, const char*, int*, float*, float*, int*, float*, const char*, int*, const char*, int*, float*, float*, int*, float*, int*, int*, int*, float*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:5359:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 3%] Built target libgromacs_external make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 3%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 3%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 3%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 3%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 25%] Built target libgromacs_generated make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 25%] Generating baseversion-gen.cpp cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/builddir/build/BUILD/gromacs-2019.6/mpich_d/VersionInfo.cmake -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/baseversion-gen.cpp.cmakein -D VERSION_OUT=utility/baseversion-gen.cpp -D GMX_SOURCE_DOI=10.5281/zenodo.3685922 -P /builddir/build/BUILD/gromacs-2019.6/cmake/gmxConfigureVersionInfo.cmake cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/cmake -E touch utility/baseversion-gen.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' cd /builddir/build/BUILD/gromacs-2019.6/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/mpich_d /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/CMakeFiles/libgromacs.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/CMakeFiles/libgromacs.dir/depend.internal". Scanning dependencies of target libgromacs make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlinemodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlineinit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlinehelpcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlinehelpwriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlineoptionsmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlineparser.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/filenm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlinemodulemanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlinehelpmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlineprogramcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/viewit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/shellcompletions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/atomdistribution.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/box.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/box.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/box.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/box.cpp: In function 'void low_set_ddbox(int, int, const int (*)[3], const real (*)[3], bool, gmx::ArrayRef >, const MPI_Comm*, gmx_ddbox_t*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/box.cpp:235:13: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 235 | static void low_set_ddbox(int numPbcDimensions, | ^~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/box.cpp: In function 'void set_ddbox(const gmx_domdec_t&, bool, const real (*)[3], bool, gmx::ArrayRef >, gmx_ddbox_t*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/box.cpp:282:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 282 | void set_ddbox(const gmx_domdec_t &dd, | ^~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/box.cpp:296:22: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 296 | low_set_ddbox(dd.npbcdim, dd.numBoundedDimensions, | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 | &dd.nc, box, calculateUnboundedSize, xRef, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 | needToReduceCoordinateData ? &dd.mpi_comm_all : nullptr, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 | ddbox); | ~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/box.cpp:296:22: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/box.cpp: In function 'void set_ddbox_cr(const t_commrec&, const int (*)[3], const t_inputrec&, const real (*)[3], gmx::ArrayRef >, gmx_ddbox_t*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/box.cpp:308:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 308 | void set_ddbox_cr(const t_commrec &cr, | ^~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/box.cpp:317:22: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 317 | low_set_ddbox(ePBC2npbcdim(ir.ePBC), inputrec2nboundeddim(&ir), | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 | dd_nc, box, true, x, nullptr, ddbox); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/pargs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/dlb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/dlbtiming.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/collect.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/collect.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/collect.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/collect.cpp: In function 'void dd_collect_vec(gmx_domdec_t*, const t_state*, gmx::ArrayRef >, gmx::ArrayRef >)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/collect.cpp:247:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 247 | void dd_collect_vec(gmx_domdec_t *dd, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/collect.cpp:247:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/collect.cpp: In function 'void dd_collect_state(gmx_domdec_t*, const t_state*, t_state*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/collect.cpp:310:23: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 310 | dd_collect_vec(dd, state_local, makeConstArrayRef(state_local->x), globalXRef); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/collect.cpp:315:23: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 315 | dd_collect_vec(dd, state_local, makeConstArrayRef(state_local->v), globalVRef); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/collect.cpp:320:23: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 320 | dd_collect_vec(dd, state_local, makeConstArrayRef(state_local->cg_p), globalCgpRef); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/cellsizes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_network.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_network.cpp: In function 'void ddSendrecv(const gmx_domdec_t*, int, int, gmx::ArrayRef, gmx::ArrayRef) [with T = double]': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_network.cpp:128:1: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 128 | ddSendrecv(const gmx_domdec_t *dd, | ^~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_network.cpp:128:1: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_network.cpp:128:1: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_network.cpp: In function 'void ddSendrecv(const gmx_domdec_t*, int, int, gmx::ArrayRef, gmx::ArrayRef) [with T = gmx::BasicVector]': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_network.cpp:128:1: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_network.cpp:128:1: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_network.cpp:128:1: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/distribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_setup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_constraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_vsite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_specatomcomm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/localatomset.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/ga2la.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/dump.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/dump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/localatomsetdata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/localatomsetmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp: In function 'gmx_bool test_dd_cutoff(t_commrec*, const t_state&, real)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp:3015:14: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 3015 | set_ddbox(*dd, false, state.box, true, state.x, &ddbox); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp: In function 'void set_dd_limits_and_grid(const gmx::MDLogger&, t_commrec*, gmx_domdec_t*, const DomdecOptions&, const MdrunOptions&, const gmx_mtop_t*, const t_inputrec*, const real (*)[3], gmx::ArrayRef >, gmx_ddbox_t*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp:2137:13: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 2137 | static void set_dd_limits_and_grid(const gmx::MDLogger &mdlog, | ^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp:2358:21: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 2358 | set_ddbox_cr(*cr, &dd->nc, *ir, box, xGlobal, ddbox); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp:2383:21: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 2383 | set_ddbox_cr(*cr, nullptr, *ir, box, xGlobal, ddbox); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp: In function 'gmx_domdec_t* init_domain_decomposition(const gmx::MDLogger&, t_commrec*, const DomdecOptions&, const MdrunOptions&, const gmx_mtop_t*, const t_inputrec*, const real (*)[3], gmx::ArrayRef >, gmx::LocalAtomSetManager*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp:2953:15: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 2953 | gmx_domdec_t *init_domain_decomposition(const gmx::MDLogger &mdlog, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp:2979:27: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 2979 | set_dd_limits_and_grid(mdlog, cr, dd, options, mdrunOptions, | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2980 | mtop, ir, | ~~~~~~~~~ 2981 | box, xGlobal, | ~~~~~~~~~~~~~ 2982 | &ddbox); | ~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp: In function 'void dd_atom_spread_real(gmx_domdec_t*, real*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp:598:23: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 598 | ddSendrecv(dd, d, dddirBackward, | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 599 | sendBuffer, receiveBuffer); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp:598:23: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp:598:23: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp: In function 'void dd_atom_sum_real(gmx_domdec_t*, real*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp:664:23: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 664 | ddSendrecv(dd, d, dddirForward, | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 665 | sendBuffer, receiveBuffer); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp:664:23: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp:664:23: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp: In function 'void dd_move_x(gmx_domdec_t*, real (*)[3], gmx::ArrayRef >, gmx_wallcycle*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp:296:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 296 | void dd_move_x(gmx_domdec_t *dd, | ^~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp:386:23: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 386 | ddSendrecv(dd, d, dddirBackward, | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 387 | sendBuffer, receiveBuffer); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp:386:23: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp:386:23: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp: In function 'void dd_move_f(gmx_domdec_t*, gmx::ArrayRef >, real (*)[3], gmx_wallcycle*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp:408:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 408 | void dd_move_f(gmx_domdec_t *dd, | ^~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp:472:23: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 472 | ddSendrecv(dd, d, dddirForward, | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 473 | sendBuffer, receiveBuffer); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp:472:23: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp:472:23: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/utility.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/utility.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/utility.h:45, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/utility.cpp:45: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = gmx::BasicVector; _Alloc = gmx::Allocator, gmx::AlignedAllocationPolicy>]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/utility.h:45, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/utility.cpp:45: /usr/include/c++/9/bits/stl_vector.h: In function 'void dd_resize_state(t_state*, gmx::PaddedVector >*, int)': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/3dtransforms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_topology.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_topology.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_topology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/do_fit.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast 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-mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/functions.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/functions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/invertmatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/units.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/units.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/units.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/redistribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/utilities.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/utilities.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/utilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/veccompare.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/veccompare.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/veccompare.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/vecdump.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/vecdump.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/vecdump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/md_enums.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/df_history.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/iforceprovider.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/observableshistory.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/inputrec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/helpmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/state.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/state.cpp: In function 'real (* makeRvecArray(gmx::ArrayRef >, gmx::index))[3]': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/state.cpp:207:7: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 207 | rvec *makeRvecArray(gmx::ArrayRef v, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/state.h:59, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/state.cpp:40: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/state.h:59, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/state.cpp:40: /usr/include/c++/9/bits/stl_vector.h: In function 'void init_gtc_state(t_state*, int, int, int)': /usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 957 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 957 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 957 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 957 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 957 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/state.h:59, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/state.cpp:40: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = gmx::BasicVector; _Alloc = gmx::Allocator, gmx::HostAllocationPolicy>]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector, gmx::Allocator, gmx::HostAllocationPolicy> >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::HostAllocationPolicy> > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = gmx::BasicVector; _Alloc = gmx::Allocator, gmx::AlignedAllocationPolicy>]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >'} changed in GCC 7.1 In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/state.h:59, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/state.cpp:40: /usr/include/c++/9/bits/stl_vector.h: In function 'void state_change_natoms(t_state*, int)': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::HostAllocationPolicy> > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/helpformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/boxutilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/helptopic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/rstparser.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc-simd.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/pbc-simd.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/pbc-simd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/partition.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.cpp: In function 'void dd_move_cellx(gmx_domdec_t*, const gmx_ddbox_t*, real*, real*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.cpp:259:23: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 259 | ddSendrecv(dd, d, dddirBackward, | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 260 | gmx::arrayRefFromArray(&buf_s[0].min0, numReals), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 | gmx::arrayRefFromArray(&buf_r[0].min0, numReals)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.cpp:259:23: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.cpp:259:23: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.h:48, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.cpp:46: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Tp = gmx::BasicVector; _Alloc = std::allocator >]': /usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 721 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.h:48, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.cpp:46: /usr/include/c++/9/bits/stl_vector.h: In function 'void setup_dd_communication(gmx_domdec_t*, real (*)[3], gmx_ddbox_t*, t_forcerec*, t_state*, gmx::PaddedVector >*)': /usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 1662 | _M_range_insert(__pos, __first, __last, | ^~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.cpp:2236:34: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 2236 | ddSendrecv(dd, dim_ind, dddirBackward, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2237 | work.positionBuffer, rvecBufferRef); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.cpp:2236:34: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.cpp:2236:34: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.cpp: In function 'void dd_partition_system(FILE*, const gmx::MDLogger&, int64_t, const t_commrec*, gmx_bool, int, t_state*, const gmx_mtop_t*, const t_inputrec*, t_state*, gmx::PaddedVector >*, gmx::MDAtoms*, gmx_localtop_t*, t_forcerec*, gmx_vsite_t*, gmx::Constraints*, t_nrnb*, gmx_wallcycle*, gmx_bool)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.cpp:3244:18: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 3244 | set_ddbox(*dd, true, | ~~~~~~~~~^~~~~~~~~~~ 3245 | DDMASTER(dd) ? state_global->box : nullptr, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3246 | true, xGlobal, | ~~~~~~~~~~~~~~ 3247 | &ddbox); | ~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.cpp:3297:18: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 3297 | set_ddbox(*dd, bMasterState, state_local->box, | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3298 | true, state_local->x, &ddbox); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.cpp:3316:18: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 3316 | set_ddbox(*dd, bMasterState, state_local->box, | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3317 | bNStGlobalComm, state_local->x, &ddbox); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.cpp:3336:39: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 3336 | comm->updateGroupsCog->addCogs(gmx::arrayRefFromArray(dd->globalAtomGroupIndices.data(), dd->ncg_home), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3337 | state_local->x); | ~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.cpp:3336:39: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.cpp:3364:43: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 3364 | comm->updateGroupsCog->addCogs(gmx::arrayRefFromArray(dd->globalAtomGroupIndices.data(), dd->ncg_home), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3365 | state_local->x); | ~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.cpp:3364:43: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.cpp:3419:34: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 3419 | nbnxn_put_on_grid(fr->nbv->nbs.get(), fr->ePBC, state_local->box, | make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3420 | 0, | ~~ 3421 | comm->zones.size[0].bb_x0, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 3422 | comm->zones.size[0].bb_x1, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 3423 | comm->updateGroupsCog.get(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3424 | 0, dd->ncg_home, | ~~~~~~~~~~~~~~~~ 3425 | comm->zones.dens_zone0, | ~~~~~~~~~~~~~~~~~~~~~~~ 3426 | fr->cginfo, | ~~~~~~~~~~~ 3427 | state_local->x, | ~~~~~~~~~~~~~~~ 3428 | ncg_moved, bRedist ? comm->movedBuffer.data() : nullptr, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3429 | fr->nbv->grp[eintLocal].kernel_type, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3430 | fr->nbv->nbat); | ~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/rmpbc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/random/seed.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/random/seed.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/seed.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/helpwritercontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/mshift.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tabulatednormaldistribution.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/pbc.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/pbc.cpp: In function 'void put_atoms_in_box(int, const real (*)[3], gmx::ArrayRef >)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/pbc.cpp:1413:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 1413 | void put_atoms_in_box(int ePBC, const matrix box, gmx::ArrayRef x) | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/pbc.cpp: In function 'void put_atoms_in_triclinic_unitcell(int, const real (*)[3], gmx::ArrayRef >)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/pbc.cpp:1473:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 1473 | void put_atoms_in_triclinic_unitcell(int ecenter, const matrix box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/pbc.cpp: In function 'void put_atoms_in_compact_unitcell(int, int, const real (*)[3], gmx::ArrayRef >)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/pbc.cpp:1531:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 1531 | void put_atoms_in_compact_unitcell(int ePBC, int ecenter, const matrix box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/pbc.cpp:1531:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/splineutil.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/splineutil.cpp: In function 'real gmx::internal::findSmallestQuotientOfFunctionAndSecondDerivative(gmx::ArrayRef, double, const std::pair&)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/splineutil.cpp:212:1: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 212 | findSmallestQuotientOfFunctionAndSecondDerivative(ArrayRef function, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/splineutil.cpp: In function 'real gmx::internal::findSmallestQuotientOfFunctionAndThirdDerivative(gmx::ArrayRef, double, const std::pair&)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/splineutil.cpp:290:1: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 290 | findSmallestQuotientOfFunctionAndThirdDerivative(ArrayRef function, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/splineutil.cpp: In function 'void gmx::internal::throwUnlessDerivativeIsConsistentWithFunction(gmx::ArrayRef, gmx::ArrayRef, double, const std::pair&)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/splineutil.cpp:112:1: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 112 | throwUnlessDerivativeIsConsistentWithFunction(ArrayRef function, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/splineutil.cpp:112:1: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/splineutil.cpp: In function 'std::vector gmx::internal::vectorSecondDerivative(gmx::ArrayRef, double)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/splineutil.cpp:309:1: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 309 | vectorSecondDerivative(ArrayRef f, double spacing) | ^~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/forcetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/walltime_accounting.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/cubicsplinetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/cubicsplinetable.cpp: In constructor 'gmx::CubicSplineTable::CubicSplineTable(std::initializer_list, const std::pair&, real)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/cubicsplinetable.cpp:397:1: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 397 | CubicSplineTable::CubicSplineTable(std::initializer_list numericalInputList, | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/cubicsplinetable.cpp:397:1: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/wallcycle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/quadraticsplinetable.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/quadraticsplinetable.cpp: In constructor 'gmx::QuadraticSplineTable::QuadraticSplineTable(std::initializer_list, const std::pair&, real)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/quadraticsplinetable.cpp:361:1: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 361 | QuadraticSplineTable::QuadraticSplineTable(std::initializer_list numericalInputList, | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/quadraticsplinetable.cpp:170:100: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 170 | std::vector thirdDerivative(internal::vectorSecondDerivative(derivative, inputSpacing)); | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/atomprop.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atoms.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/atoms.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/atoms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/block.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/block.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/block.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/ifunc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/forcefieldparameters.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/atomsbuilder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/exclusionblocks.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/idef.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/idef.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/idef.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/invblock.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/invblock.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/invblock.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/residuetypes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/symtab.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/symtab.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/symtab.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/index.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/index.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/index.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/alignedallocator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/baseversion.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/topsort.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/topsort.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/topsort.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/basenetwork.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/compare.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/compare.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/compare.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/topology.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/topology.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/topology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/binaryinformation.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/binaryinformation.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/binaryinformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/coolstuff.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/errorcodes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/cstringutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/errorformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/mtop_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/fileredirector.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/fatalerror.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/directoryenumerator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops 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-Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/exceptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/filestream.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/filestream.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/filestream.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/futil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/futil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/futil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/gmxomp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/init.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/init.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/init.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/int64_to_int.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxregex.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/gmxregex.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/gmxregex.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/ikeyvaluetreeerror.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/inmemoryserializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/logger.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/logger.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/logger.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/messagestringcollector.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/messagestringcollector.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/messagestringcollector.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/keyvaluetree.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/niceheader.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/loggerbuilder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/pleasecite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/programcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/physicalnodecommunicator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/smalloc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/keyvaluetreeserializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/strdb.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/strdb.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/strdb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/path.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/path.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/path.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/strconvert.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/stringstream.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/sysinfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/txtdump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/textreader.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/textreader.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/textreader.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/variant.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/variant.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/variant.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/textwriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/stringutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/confio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/confio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/confio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/filetypes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/espio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/espio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/espio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/gmx_internal_xdr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/g96io.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/enxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio-xdr.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmxfio-xdr.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/gmxfio-xdr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/keyvaluetreetransform.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/gmxfio.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/gmxfio.h:44, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/gmxfio.cpp:39: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {}; _Tp = gmx_file_position_t; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In function 'std::vector gmx_fio_get_output_file_positions()': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/md5.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/md5.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/md5.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/groio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/groio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/groio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/libxdrf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/mtxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/oenv.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/matio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/matio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/matio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/timecontrol.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/checkpoint.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/pdbio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/trrio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/warninp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/tngio.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/arrayref.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/tngio.h:42, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/tngio.cpp:37: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/arrayref.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/tngio.h:42, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/tngio.cpp:37: /usr/include/c++/9/bits/stl_vector.h: In function 'void gmx_tng_add_mtop(gmx_tng_trajectory_t, const gmx_mtop_t*)': /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/writeps.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/trxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/xdrd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/xtcio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/xvgr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/readinp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/swap/swapcoords.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/swap/swapcoords.cpp:51: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gmx::LocalAtomSet}; _Tp = swap_group; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/include/c++/9/bits/vector.tcc: In function 'void init_swapcoords(FILE*, t_inputrec*, const char*, gmx_mtop_t*, const t_state*, ObservablesHistory*, t_commrec*, gmx::LocalAtomSetManager*, const gmx_output_env_t*, const MdrunOptions&)': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/output.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pulling/output.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/output.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/tpxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/essentialdynamics/edsam.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/filenm.h:48, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/essentialdynamics/edsam.cpp:46: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {edpar&}; _Tp = edpar; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In function 'std::unique_ptr init_edsam(const gmx::MDLogger&, const char*, const char*, const gmx_mtop_t*, const t_inputrec*, const t_commrec*, gmx::Constraints*, const t_state*, ObservablesHistory*, const gmx_output_env_t*, gmx_bool)': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pull.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pull.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pull.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/arrayref.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pull.h:58, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pull.cpp:39: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {t_pull_group&, gmx::LocalAtomSet, const bool&}; _Tp = pull_group_work_t; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {t_pull_coord&}; _Tp = pull_coord_work_t; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const t_pull_group&, const gmx::LocalAtomSet&, bool&}; _Tp = pull_group_work_t; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/include/c++/9/bits/vector.tcc: In function 'pull_t* init_pull(FILE*, const pull_params_t*, const t_inputrec*, const gmx_mtop_t*, const t_commrec*, gmx::LocalAtomSetManager*, real)': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/arrayref.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pull.h:58, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pull.cpp:39: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/arrayref.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pull.h:58, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pull.cpp:39: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pull.cpp:2259:1: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 2259 | } | ^ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pull.cpp:2259:1: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pull.cpp:2259:1: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pullutil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pullutil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pullutil.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pullutil.cpp: In function 'bool pullCheckPbcWithinGroup(const pull_t&, gmx::ArrayRef >, const t_pbc&, int, real)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pullutil.cpp:963:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 963 | bool pullCheckPbcWithinGroup(const pull_t &pull, | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/stringutil.h:50, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/network.h:48, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pullutil.cpp:45: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/stringutil.h:50, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/network.h:48, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pullutil.cpp:45: /usr/include/c++/9/bits/stl_vector.h: In function 'void allocStatePrevStepPullCom(t_state*, pull_t*)': /usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 957 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasparams.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasparams.h:53, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasparams.cpp:47: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In constructor 'gmx::BiasParams::BiasParams(const gmx::AwhParams&, const gmx::AwhBiasParams&, const std::vector&, double, double, gmx::BiasParams::DisableUpdateSkips, int, const std::vector&, int)': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biassharing.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/biassharing.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biassharing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/bias.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/bias.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp: In member function 'void gmx::Bias::updateForceCorrelationGrid(gmx::ArrayRef, double)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp:378:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 378 | void Bias::updateForceCorrelationGrid(gmx::ArrayRef probWeightNeighbor, | ^~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp:399:45: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 399 | state_.calcUmbrellaForceAndPotential(dimParams_, grid_, indexNeighbor, forceFromNeighbor); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp:70: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/correlationgrid.h:107:41: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 107 | tensors_[pointIndex].addData(weight, data, blockLengthMeasure == BlockLengthMeasure::Weight, t); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp: In member function 'gmx::ArrayRef gmx::Bias::calcForceAndUpdateBias(const double*, double*, double*, const t_commrec*, const gmx_multisim_t*, double, int64_t, int64_t, FILE*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp:144:39: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 144 | updateForceCorrelationGrid(probWeightNeighbor, t); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp:162:34: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 162 | state_.calcConvolvedForce(dimParams_, grid_, probWeightNeighbor, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 | tempForce_, biasForce_); | ~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp:162:34: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp:162:34: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp:162:34: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp:173:49: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 173 | state_.calcUmbrellaForceAndPotential(dimParams_, grid_, coordState.umbrellaGridpoint(), biasForce_); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp:182:54: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 182 | double newPotential = state_.moveUmbrella(dimParams_, grid_, probWeightNeighbor, biasForce_, step, seed, params_.biasIndex); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp:182:54: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp:182:54: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pull_rotation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/awh.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/awh.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/awh.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/awh.h:69, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/awh.cpp:47: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double&, const double&, const double&}; _Tp = gmx::DimParams; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gmx::Bias, std::vector >&}; _Tp = gmx::BiasCoupledToSystem; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/include/c++/9/bits/vector.tcc: In constructor 'gmx::Awh::Awh(FILE*, const t_inputrec&, const t_commrec*, const gmx_multisim_t*, const gmx::AwhParams&, const string&, pull_t*)': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/coordstate.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/coordstate.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/coordstate.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/coordstate.cpp: In member function 'void gmx::CoordState::sampleUmbrellaGridpoint(const gmx::Grid&, int, gmx::ArrayRef, int64_t, int64_t, int)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/coordstate.cpp:131:1: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 131 | CoordState::sampleUmbrellaGridpoint(const Grid &grid, | ^~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biaswriter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/biaswriter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biaswriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationtensor.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationtensor.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/correlationtensor.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/correlationtensor.cpp: In member function 'void gmx::CorrelationTensor::addData(double, gmx::ArrayRef, bool, double)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/correlationtensor.cpp:226:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 226 | void CorrelationTensor::addData(double weight, | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/correlationtensor.cpp:226:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/correlationtensor.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/correlationtensor.cpp:47: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {int&, double}; _Tp = gmx::CorrelationBlockData; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In constructor 'gmx::CorrelationTensor::CorrelationTensor(int, int, double)': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/correlationhistory.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationgrid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationgrid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/correlationgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/pointstate.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/pointstate.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/pointstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/histogramsize.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/histogramsize.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/histogramsize.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/histogramsize.cpp: In member function 'double gmx::HistogramSize::newHistogramSizeInitialStage(const gmx::BiasParams&, double, bool, gmx::ArrayRef, FILE*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/histogramsize.cpp:78:8: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 78 | double HistogramSize::newHistogramSizeInitialStage(const BiasParams ¶ms, | ^~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/histogramsize.cpp: In member function 'double gmx::HistogramSize::newHistogramSize(const gmx::BiasParams&, double, bool, const std::vector&, gmx::ArrayRef, FILE*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/histogramsize.cpp:210:8: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 210 | double HistogramSize::newHistogramSize(const BiasParams ¶ms, | ^~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/histogramsize.cpp:242:56: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 242 | newHistogramSize = newHistogramSizeInitialStage(params, t, covered, weightsumCovering, fplog); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/histogramsize.cpp:242:56: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/grid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/grid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/grid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/dimparams.h:52, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/grid.h:60, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/grid.cpp:47: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double&, double&, double&, double&}; _Tp = gmx::GridAxis; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In constructor 'gmx::Grid::Grid(const std::vector&, const gmx::AwhDimParams*)': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&, const double&, double, int&}; _Tp = gmx::GridAxis; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In function 'void gmx::mapGridToDataGrid(std::vector*, const double* const*, int, const string&, const gmx::Grid&, const string&)': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/grid.cpp:830:1: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 830 | } | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/simd/support.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/simd/support.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/support.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/imd/imdsocket.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp: In function 'void gmx::{anonymous}::sumOverSimulations(gmx::ArrayRef, const t_commrec*, const gmx_multisim_t*) [with T = double]': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:128:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 128 | void sumOverSimulations(gmx::ArrayRef arrayRef, | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp: In function 'void gmx::{anonymous}::updateTargetDistribution(gmx::ArrayRef, const gmx::BiasParams&)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:293:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 293 | void updateTargetDistribution(gmx::ArrayRef pointState, | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp: In member function 'double gmx::BiasState::calcUmbrellaForceAndPotential(const std::vector&, const gmx::Grid&, int, gmx::ArrayRef) const': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:423:8: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 423 | double BiasState::calcUmbrellaForceAndPotential(const std::vector &dimParams, | ^~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp: In member function 'void gmx::BiasState::calcConvolvedForce(const std::vector&, const gmx::Grid&, gmx::ArrayRef, gmx::ArrayRef, gmx::ArrayRef) const': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:443:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 443 | void BiasState::calcConvolvedForce(const std::vector &dimParams, | ^~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:443:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:443:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:463:38: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 463 | calcUmbrellaForceAndPotential(dimParams, grid, indexNeighbor, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 | forceFromNeighbor); | ~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp: In member function 'double gmx::BiasState::moveUmbrella(const std::vector&, const gmx::Grid&, gmx::ArrayRef, gmx::ArrayRef, int64_t, int64_t, int)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:474:8: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 474 | double BiasState::moveUmbrella(const std::vector &dimParams, | ^~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:474:8: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:474:8: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:483:40: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 483 | coordState_.sampleUmbrellaGridpoint(grid, coordState_.gridpointIndex(), probWeightNeighbor, step, seed, indexSeed); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:483:40: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:487:38: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 487 | calcUmbrellaForceAndPotential(dimParams, grid, coordState_.umbrellaGridpoint(), newForce); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp: In member function 'void gmx::BiasState::sampleProbabilityWeights(const gmx::Grid&, gmx::ArrayRef)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:1231:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 1231 | void BiasState::sampleProbabilityWeights(const Grid &grid, | ^~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp: In member function 'void gmx::BiasState::sampleCoordAndPmf(const gmx::Grid&, gmx::ArrayRef, double)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:1286:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 1286 | void BiasState::sampleCoordAndPmf(const Grid &grid, | ^~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp: In member function 'void gmx::BiasState::updateFreeEnergyAndAddSamplesToHistogram(const std::vector&, const gmx::Grid&, const gmx::BiasParams&, const t_commrec*, const gmx_multisim_t*, double, int64_t, FILE*, std::vector*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:1074:62: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 1074 | double newHistogramSize = histogramSize_.newHistogramSize(params, t, detectedCovering, points_, weightSumCovering_, fplog); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:1074:62: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:1074:62: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:1074:62: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:1074:62: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:1074:62: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:1074:62: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:1074:62: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/conformation-utilities.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/conformation-utilities.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/conformation-utilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/imd/imd.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/imd/imd.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/imd/imd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/read-params.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/read-params.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/read-params.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/chargegroup.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/chargegroup.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/chargegroup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/network.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o cd 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'/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_generic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic_cg.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong 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/usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nonbonded.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nonbonded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H 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src/gromacs/CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/boxdeformation.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/boxdeformation.cpp: In member function 'void gmx::BoxDeformation::apply(gmx::ArrayRef >, real (*)[3], int64_t)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/boxdeformation.cpp:109:1: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 109 | BoxDeformation::apply(ArrayRef x, | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/calcmu.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/calcmu.cpp: In function 'void calc_mu(int, int, gmx::ArrayRef >, const real*, const real*, int, double*, double*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/calcmu.cpp:50:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 50 | void calc_mu(int start, int homenr, gmx::ArrayRef x, const real q[], const real qB[], | ^~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/checkpointhandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/calcvir.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/compute_io.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/constraintrange.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/constraintrange.cpp: In function 'void gmx::constr_recur(const t_blocka*, const InteractionLists&, gmx::ArrayRef, gmx_bool, int, int, int, int*, real, real, real*, int*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/constraintrange.cpp:60:13: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 60 | static void constr_recur(const t_blocka *at2con, | ^~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/calc_verletbuf.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/calc_verletbuf.cpp: In function 'real maxSigma(real, gmx::ArrayRef)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/calc_verletbuf.cpp:845:13: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 845 | static real maxSigma(real kT_fac, | ^~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/arrayref.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/calc_verletbuf.h:39, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/calc_verletbuf.cpp:37: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {VerletbufAtomtype}; _Tp = VerletbufAtomtype; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In function 'std::vector get_verlet_buffer_atomtypes(const gmx_mtop_t*, bool, int*)': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/ebin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/constr.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/constr.cpp: In function 't_blocka gmx::make_at2con(const gmx_moltype_t&, gmx::ArrayRef, gmx::FlexibleConstraintTreatment)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/constr.cpp:848:10: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 848 | t_blocka make_at2con(const gmx_moltype_t &moltype, | ^~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/broadcaststructs.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/broadcaststructs.h:48, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/broadcaststructs.cpp:40: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = gmx::BasicVector; _Alloc = gmx::Allocator, gmx::HostAllocationPolicy>]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector, gmx::Allocator, gmx::HostAllocationPolicy> >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::HostAllocationPolicy> > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/broadcaststructs.h:48, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/broadcaststructs.cpp:40: /usr/include/c++/9/bits/stl_vector.h: In function 'void broadcastStateWithoutDynamics(const t_commrec*, t_state*)': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::HostAllocationPolicy> > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/gmx_omp_nthreads.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/force.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/force.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/force.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/force.cpp: In function 'void sum_dhdl(gmx_enerdata_t*, gmx::ArrayRef, t_lambda*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/force.cpp:698:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 698 | void sum_dhdl(gmx_enerdata_t *enerd, gmx::ArrayRef lambda, t_lambda *fepvals) | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/coupling.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/coupling.cpp: In function 'void andersen_tcoupl(const t_inputrec*, int64_t, const t_commrec*, const t_mdatoms*, gmx::ArrayRef >, real, const gmx_bool*, const real*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/coupling.cpp:781:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 781 | void andersen_tcoupl(const t_inputrec *ir, int64_t step, | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/groupcoord.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/expanded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/md_support.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdatoms.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdatoms.h:43, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdatoms.cpp:39: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = gmx::Allocator]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdatoms.h:43, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdatoms.cpp:39: /usr/include/c++/9/bits/stl_vector.h: In function 'void atoms2md(const gmx_mtop_t*, const t_inputrec*, int, const int*, int, gmx::MDAtoms*)': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h: In member function 'void gmx::MDAtoms::resize(int)': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h: In function 'void gmx::changePinningPolicy(gmx::HostVector*, gmx::PinningPolicy) [with T = double]': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/lincs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/forcerec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdebin_bar.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdsetup.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdsetup.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdsetup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdoutf.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdoutf.cpp: In function 'void mdoutf_write_to_trajectory_files(FILE*, const t_commrec*, gmx_mdoutf_t, int, gmx_mtop_t*, int64_t, double, t_state*, t_state*, ObservablesHistory*, gmx::ArrayRef >)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdoutf.cpp:247:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 247 | void mdoutf_write_to_trajectory_files(FILE *fplog, const t_commrec *cr, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdoutf.cpp:269:31: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 269 | dd_collect_vec(cr->dd, state_local, makeArrayRef(state_local->x), globalXRef); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdoutf.cpp:274:31: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 274 | dd_collect_vec(cr->dd, state_local, makeArrayRef(state_local->v), globalVRef); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdoutf.cpp:280:27: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 280 | dd_collect_vec(cr->dd, state_local, f_local, gmx::arrayRefFromArray(reinterpret_cast(f_global), f_local.size())); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdebin.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdebin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_atomdata.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_atomdata.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_atomdata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/membed.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_grid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_grid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_grid.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_grid.cpp: In function 'void nbnxn_put_on_grid(nbnxn_search_t, int, const real (*)[3], int, const real*, const real*, const gmx::UpdateGroupsCog*, int, int, real, const int*, gmx::ArrayRef >, int, const int*, int, nbnxn_atomdata_t*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_grid.cpp:1416:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 1416 | void nbnxn_put_on_grid(nbnxn_search_t nbs, | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_grid.cpp: In function 'void nbnxn_put_on_grid_nonlocal(nbnxn_search_t, const gmx_domdec_zones_t*, const int*, gmx::ArrayRef >, int, nbnxn_atomdata_t*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_grid.cpp:1520:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 1520 | void nbnxn_put_on_grid_nonlocal(nbnxn_search_t nbs, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_grid.cpp:1536:26: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 1536 | nbnxn_put_on_grid(nbs, nbs->ePBC, nullptr, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 1537 | zone, c0, c1, | ~~~~~~~~~~~~~ 1538 | nullptr, | ~~~~~~~~ 1539 | zones->cg_range[zone], | ~~~~~~~~~~~~~~~~~~~~~~ 1540 | zones->cg_range[zone+1], | ~~~~~~~~~~~~~~~~~~~~~~~~ 1541 | -1, | ~~~ 1542 | atinfo, | ~~~~~~~ 1543 | x, | ~~ 1544 | 0, nullptr, | ~~~~~~~~~~~ 1545 | nb_kernel_type, | ~~~~~~~~~~~~~~~ 1546 | nbat); | ~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nsgrid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nsgrid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nsgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/perf_est.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_tuning.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_tuning.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_tuning.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/qm_gamess.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/qm_mopac.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/qm_orca.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/qm_gaussian.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qmmm.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qmmm.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/qmmm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/rbin.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/rbin.cpp: In function 'int add_binr(t_bin*, gmx::ArrayRef)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/rbin.cpp:103:5: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 103 | int add_binr(t_bin *b, gmx::ArrayRef r) | ^~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/rbin.cpp:103:5: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/rbin.cpp: In function 'void extract_binr(t_bin*, int, gmx::ArrayRef)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/rbin.cpp:160:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 160 | void extract_binr(t_bin *b, int index, gmx::ArrayRef r) | ^~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/resethandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ns.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/ns.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/ns.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/rf_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sighandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/shake.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/settle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/simulationsignal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_search.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_search.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_search.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/splitter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/stat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shellfc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/shellfc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/shellfc.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/shellfc.h:43, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/shellfc.cpp:39: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = gmx::BasicVector; _Alloc = gmx::Allocator, gmx::AlignedAllocationPolicy>]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/shellfc.h:43, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/shellfc.cpp:39: /usr/include/c++/9/bits/stl_vector.h: In function 'void relax_shell_flexcon(FILE*, const t_commrec*, const gmx_multisim_t*, gmx_bool, gmx_enfrot*, int64_t, const t_inputrec*, gmx_bool, int, gmx_localtop_t*, gmx::Constraints*, gmx_enerdata_t*, t_fcdata*, t_state*, gmx::ArrayRefWithPadding >, real (*)[3], const t_mdatoms*, t_nrnb*, gmx_wallcycle_t, t_graph*, const gmx_groups_t*, gmx_shellfc_t*, t_forcerec*, gmx::PpForceWorkload*, double, real*, const gmx_vsite_t*, DdOpenBalanceRegionBeforeForceComputation, DdCloseBalanceRegionAfterForceComputation)': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/shellfc.cpp:1144:13: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 1144 | do_force(fplog, cr, ms, inputrec, nullptr, enforcedRotation, | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1145 | mdstep, nrnb, wcycle, top, groups, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1146 | state->box, state->x.arrayRefWithPadding(), &state->hist, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1147 | forceWithPadding[Min], force_vir, md, enerd, fcd, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1148 | state->lambda, graph, | ~~~~~~~~~~~~~~~~~~~~~ 1149 | fr, ppForceWorkload, vsite, mu_tot, t, nullptr, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1150 | (bDoNS ? GMX_FORCE_NS : 0) | shellfc_flags, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1151 | ddOpenBalanceRegion, ddCloseBalanceRegion); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/shellfc.cpp:1254:17: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 1254 | do_force(fplog, cr, ms, inputrec, nullptr, enforcedRotation, | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1255 | 1, nrnb, wcycle, | ~~~~~~~~~~~~~~~~ 1256 | top, groups, state->box, posWithPadding[Try], &state->hist, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1257 | forceWithPadding[Try], force_vir, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1258 | md, enerd, fcd, state->lambda, graph, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1259 | fr, ppForceWorkload, vsite, mu_tot, t, nullptr, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1260 | shellfc_flags, | ~~~~~~~~~~~~~~ 1261 | ddOpenBalanceRegion, ddCloseBalanceRegion); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/stophandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/tgroup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/trajectory_writing.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/trajectory_writing.cpp: In function 'void do_md_trajectory_writing(FILE*, t_commrec*, int, const t_filenm*, int64_t, int64_t, double, t_inputrec*, t_state*, t_state*, ObservablesHistory*, gmx_mtop_t*, t_forcerec*, gmx_mdoutf_t, t_mdebin*, gmx_ekindata_t*, gmx::ArrayRef >, gmx_bool, gmx_bool, gmx_bool, gmx_bool, gmx_bool)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/trajectory_writing.cpp:57:1: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 57 | do_md_trajectory_writing(FILE *fplog, | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/trajectory_writing.cpp:164:41: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 164 | mdoutf_write_to_trajectory_files(fplog, cr, outf, mdof_flags, top_global, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 | step, t, state, state_global, observablesHistory, f); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp: In function 'void computeSpecialForces(FILE*, const t_commrec*, const t_inputrec*, gmx::Awh*, gmx_enfrot*, int64_t, double, gmx_wallcycle_t, ForceProviders*, real (*)[3], gmx::ArrayRef >, const t_mdatoms*, real*, int, gmx::ForceWithVirial*, gmx_enerdata_t*, gmx_edsam*, gmx_bool)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:796:1: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 796 | computeSpecialForces(FILE *fplog, | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp: In function 'void put_atoms_in_box_omp(int, const real (*)[3], gmx::ArrayRef >)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:2722:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 2722 | void put_atoms_in_box_omp(int ePBC, const matrix box, gmx::ArrayRef x) | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp: In function 'void initialize_lambdas(FILE*, t_inputrec*, int*, gmx::ArrayRef, double*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:2875:13: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 2875 | extern void initialize_lambdas(FILE *fplog, t_inputrec *ir, int *fep_state, gmx::ArrayRef lambda, double *lam0) | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp: In function 'void init_md(FILE*, const t_commrec*, gmx::IMDOutputProvider*, t_inputrec*, const gmx_output_env_t*, const MdrunOptions&, double*, double*, t_state*, double*, t_nrnb*, gmx_mtop_t*, gmx_update_t**, gmx::BoxDeformation*, int, const t_filenm*, gmx_mdoutf**, t_mdebin**, real (*)[3], real (*)[3], real (*)[3], real (*)[3], real*, gmx_bool*, t_vcm**, gmx_wallcycle_t)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:2973:27: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 2973 | initialize_lambdas(fplog, ir, &globalState->fep_state, globalState->lambda, lam0); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:2973:27: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:2979:27: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 2979 | initialize_lambdas(fplog, ir, &tmpFepState, tmpLambda, lam0); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:2979:27: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp: In function 'void init_rerun(FILE*, const t_commrec*, gmx::IMDOutputProvider*, t_inputrec*, const gmx_output_env_t*, const MdrunOptions&, t_state*, double*, t_nrnb*, gmx_mtop_t*, int, const t_filenm*, gmx_mdoutf**, t_mdebin**, gmx_wallcycle_t)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:3047:27: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 3047 | initialize_lambdas(fplog, ir, &globalState->fep_state, globalState->lambda, lam0); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:3047:27: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:3053:27: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 3053 | initialize_lambdas(fplog, ir, &tmpFepState, tmpLambda, lam0); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:3053:27: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp: In function 'void do_force(FILE*, const t_commrec*, const gmx_multisim_t*, const t_inputrec*, gmx::Awh*, gmx_enfrot*, int64_t, t_nrnb*, gmx_wallcycle_t, gmx_localtop_t*, const gmx_groups_t*, real (*)[3], gmx::ArrayRefWithPadding >, history_t*, gmx::ArrayRefWithPadding >, real (*)[3], const t_mdatoms*, gmx_enerdata_t*, t_fcdata*, gmx::ArrayRef, t_graph*, t_forcerec*, gmx::PpForceWorkload*, const gmx_vsite_t*, real*, double, gmx_edsam*, int, DdOpenBalanceRegionBeforeForceComputation, DdCloseBalanceRegionAfterForceComputation)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:2120:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 2120 | void do_force(FILE *fplog, | ^~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:1175:30: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 1175 | nbnxn_put_on_grid(nbv->nbs.get(), fr->ePBC, box, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1176 | 0, vzero, box_diag, | ~~~~~~~~~~~~~~~~~~~ 1177 | nullptr, 0, mdatoms->homenr, -1, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1178 | fr->cginfo, x.unpaddedArrayRef(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1179 | 0, nullptr, | ~~~~~~~~~~~ 1180 | nbv->grp[eintLocal].kernel_type, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1181 | nbv->nbat); | ~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:1187:39: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 1187 | nbnxn_put_on_grid_nonlocal(nbv->nbs.get(), domdec_zones(cr->dd), | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1188 | fr->cginfo, x.unpaddedArrayRef(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1189 | nbv->grp[eintNonlocal].kernel_type, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1190 | nbv->nbat); | ~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:1187:39: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:1575:25: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 1575 | computeSpecialForces(fplog, cr, inputrec, awh, enforcedRotation, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1576 | step, t, wcycle, | ~~~~~~~~~~~~~~~~ 1577 | fr->forceProviders, box, x.unpaddedArrayRef(), mdatoms, lambda, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1578 | flags, &forceWithVirial, enerd, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1579 | ed, bNS); | ~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:1627:22: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 1627 | dd_move_f(cr->dd, force.unpaddedArrayRef(), fr->fshift, wcycle); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:2048:25: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 2048 | computeSpecialForces(fplog, cr, inputrec, awh, enforcedRotation, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2049 | step, t, wcycle, | ~~~~~~~~~~~~~~~~ 2050 | fr->forceProviders, box, x.unpaddedArrayRef(), mdatoms, lambda, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2051 | flags, &forceWithVirial, enerd, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2052 | ed, bNS); | ~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:2059:22: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 2059 | dd_move_f(cr->dd, force.unpaddedArrayRef(), fr->fshift, wcycle); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:2070:26: note: parameter passing for argument of type 'const gmx::ArrayRef >' changed in GCC 7.1 2070 | dd_move_f(cr->dd, forceWithVirial.force_, nullptr, wcycle); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:1575:25: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 1575 | computeSpecialForces(fplog, cr, inputrec, awh, enforcedRotation, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1576 | step, t, wcycle, | ~~~~~~~~~~~~~~~~ 1577 | fr->forceProviders, box, x.unpaddedArrayRef(), mdatoms, lambda, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1578 | flags, &forceWithVirial, enerd, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1579 | ed, bNS); | ~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:1575:25: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:1575:25: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/vcm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/updategroupscog.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/updategroupscog.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/updategroupscog.cpp:45: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gmx::BasicVector&}; _Tp = gmx::BasicVector; _Alloc = std::allocator >]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/updategroupscog.cpp: In member function 'void gmx::UpdateGroupsCog::addCogs(gmx::ArrayRef, gmx::ArrayRef >)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/updategroupscog.cpp:85:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 85 | void UpdateGroupsCog::addCogs(gmx::ArrayRef globalAtomIndices, | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/updategroupscog.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/updategroupscog.cpp:45: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/updategroups.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wnblist.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/wnblist.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/wnblist.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/wall.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/update.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/update.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/update.cpp: In function 'void update_pcouple_after_coordinates(FILE*, int64_t, const t_inputrec*, const t_mdatoms*, const real (*)[3], const real (*)[3], const real (*)[3], const real (*)[3], t_state*, t_nrnb*, gmx_update_t*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/update.cpp:1781:27: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 1781 | upd->deform->apply(localX, state->box, step); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/update.cpp: In function 'gmx_bool update_randomize_velocities(const t_inputrec*, int64_t, const t_commrec*, const t_mdatoms*, gmx::ArrayRef >, const gmx_update_t*, const gmx::Constraints*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/update.cpp:1920:17: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 1920 | extern gmx_bool update_randomize_velocities(const t_inputrec *ir, int64_t step, const t_commrec *cr, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/update.cpp:1944:24: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 1944 | andersen_tcoupl(ir, step, cr, md, v, rate, | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 1945 | upd->sd->randomize_group, upd->sd->boltzfac); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/update.h:40, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/update.cpp:39: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = gmx::BasicVector; _Alloc = gmx::Allocator, gmx::AlignedAllocationPolicy>]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/update.h:40, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/update.cpp:39: /usr/include/c++/9/bits/stl_vector.h: In function 'void update_realloc(gmx_update_t*, int)': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h: In function 'gmx_update_t* init_update(const t_inputrec*, gmx::BoxDeformation*)': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/disre.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/disre.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/disre.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/gpubonded-impl.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/gpubonded-impl.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/gpubonded-impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/listed-forces.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/listed-forces.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/listed-forces.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/listed-internal.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/listed-internal.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/listed-internal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/bonded.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/bonded.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/bonded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied-forces/electricfield.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/applied-forces/electricfield.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/applied-forces/electricfield.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/vsite.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/vsite.cpp: In function 'void constructVsitesGlobal(const gmx_mtop_t&, gmx::ArrayRef >)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/vsite.cpp:758:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 758 | void constructVsitesGlobal(const gmx_mtop_t &mtop, | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/vsite.cpp:758:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/idef.h:43, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/vsite.h:44, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/vsite.cpp:39: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = gmx::BasicVector; _Alloc = std::allocator >]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/idef.h:43, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/vsite.h:44, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/vsite.cpp:39: /usr/include/c++/9/bits/stl_vector.h: In function '_Z25split_vsites_over_threadsPK7t_ilistPK9t_iparamsPK9t_mdatomsP11gmx_vsite_t._omp_fn.0': /usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 957 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/manage-threading.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/manage-threading.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/manage-threading.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/restcbt.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/restcbt.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/restcbt.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/position-restraints.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/position-restraints.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/position-restraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/pairs.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/pairs.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/pairs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/orires.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/orires.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/orires.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/calculate-spline-moduli.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/calculate-spline-moduli.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/calculate-spline-moduli.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald-utils.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/ewald-utils.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/ewald-utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/ewald.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/long-range-correction.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/long-range-correction.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/long-range-correction.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-gather.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gather.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-gather.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-grid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-grid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-grid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-load-balancing.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-load-balancing.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-load-balancing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-pp.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-pp.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-pp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-redistribute.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-redistribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-spline-work.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-spline-work.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-spline-work.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-gpu-program.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gpu-program.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-gpu-program.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-gpu-program-impl.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gpu-program-impl.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-gpu-program-impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fft/calcgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fft/fft.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-solve.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-solve.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-solve.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-spread.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-spread.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-spread.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-only.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-only.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-only.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-only.cpp:72: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = gmx::Allocator]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-only.cpp:72: /usr/include/c++/9/bits/stl_vector.h: In function 'void gmx::changePinningPolicy(gmx::HostVector*, gmx::PinningPolicy) [with T = double]': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-only.cpp:72: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = gmx::BasicVector; _Alloc = gmx::Allocator, gmx::HostAllocationPolicy>]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector, gmx::Allocator, gmx::HostAllocationPolicy> >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::HostAllocationPolicy> > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-only.cpp:72: /usr/include/c++/9/bits/stl_vector.h: In function 'void gmx::changePinningPolicy(gmx::HostVector*, gmx::PinningPolicy) [with T = gmx::BasicVector]': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::HostAllocationPolicy> > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h: In function 'int gmx_pmeonly(gmx_pme_t*, const t_commrec*, t_nrnb*, gmx_wallcycle*, gmx_walltime_accounting_t, t_inputrec*, PmeRunMode)': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::HostAllocationPolicy> > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fft/parallel_3dfft.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fft/fft_fftw3.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/clfftinitializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/hostallocator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/gpu_hw_info.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/gpu_hw_info.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/gpu_hw_info.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast 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-mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/gpu_utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions 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/usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/identifyavx512fmaunits.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/printhardware.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/integrator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/integrator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/integrator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/legacymdrunoptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/cpuinfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/logging.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/logging.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/logging.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/multisim.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/multisim.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/multisim.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/hardwaretopology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/replicaexchange.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/rerun.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/awh.h:69, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/rerun.cpp:52: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = gmx::BasicVector; _Alloc = gmx::Allocator, gmx::AlignedAllocationPolicy>]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/awh.h:69, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/rerun.cpp:52: /usr/include/c++/9/bits/stl_vector.h: In member function 'void gmx::Integrator::do_rerun()': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/rerun.cpp:580:21: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 580 | do_force(fplog, cr, ms, ir, awh, enforcedRotation, | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 | step, nrnb, wcycle, top, groups, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 | state->box, state->x.arrayRefWithPadding(), &state->hist, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 | f.arrayRefWithPadding(), force_vir, mdatoms, enerd, fcd, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 | state->lambda, graph, | ~~~~~~~~~~~~~~~~~~~~~ 585 | fr, ppForceWorkload, vsite, mu_tot, t, ed, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 | GMX_FORCE_NS | force_flags, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 | ddOpenBalanceRegion, ddCloseBalanceRegion); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/rerun.cpp:597:37: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 597 | do_md_trajectory_writing(fplog, cr, nfile, fnm, step, step_rel, t, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 | ir, state, state_global, observablesHistory, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 | top_global, fr, | ~~~~~~~~~~~~~~~ 600 | outf, mdebin, ekind, f, | ~~~~~~~~~~~~~~~~~~~~~~~ 601 | isCheckpointingStep, doRerun, isLastStep, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 | mdrunOptions.writeConfout, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 603 | bSumEkinhOld); | ~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/rerun.cpp:661:21: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 661 | sum_dhdl(enerd, state->lambda, ir->fepvals); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/simulationcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/md.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/md.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/md.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/awh.h:69, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/md.cpp:54: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = gmx::BasicVector; _Alloc = gmx::Allocator, gmx::AlignedAllocationPolicy>]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/awh.h:69, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/md.cpp:54: /usr/include/c++/9/bits/stl_vector.h: In member function 'void gmx::Integrator::do_md()': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/md.cpp:880:21: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 880 | do_force(fplog, cr, ms, ir, awh.get(), enforcedRotation, | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 881 | step, nrnb, wcycle, top, groups, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 882 | state->box, state->x.arrayRefWithPadding(), &state->hist, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 883 | f.arrayRefWithPadding(), force_vir, mdatoms, enerd, fcd, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 884 | state->lambda, graph, | ~~~~~~~~~~~~~~~~~~~~~ 885 | fr, ppForceWorkload, vsite, mu_tot, t, ed ? ed->getLegacyED() : nullptr, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 886 | (bNS ? GMX_FORCE_NS : 0) | force_flags, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 887 | ddOpenBalanceRegion, ddCloseBalanceRegion); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/md.cpp:1031:25: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 1031 | sum_dhdl(enerd, state->lambda, ir->fepvals); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/md.cpp:1056:33: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 1056 | do_md_trajectory_writing(fplog, cr, nfile, fnm, step, step_rel, t, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1057 | ir, state, state_global, observablesHistory, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1058 | top_global, fr, | ~~~~~~~~~~~~~~~ 1059 | outf, mdebin, ekind, f, | ~~~~~~~~~~~~~~~~~~~~~~~ 1060 | checkpointHandler->isCheckpointingStep(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1061 | bRerunMD, bLastStep, | ~~~~~~~~~~~~~~~~~~~~ 1062 | mdrunOptions.writeConfout, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 1063 | bSumEkinhOld); | ~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/md.cpp:1094:55: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 1094 | bIfRandomize = update_randomize_velocities(ir, step, cr, mdatoms, state->v, upd, constr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/md.cpp:1304:21: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 1304 | sum_dhdl(enerd, state->lambda, ir->fepvals); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/mimic.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/awh.h:69, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/mimic.cpp:53: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = gmx::BasicVector; _Alloc = gmx::Allocator, gmx::AlignedAllocationPolicy>]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = gmx::BasicVector; _Alloc = gmx::Allocator, gmx::HostAllocationPolicy>]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector, gmx::Allocator, gmx::HostAllocationPolicy> >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::HostAllocationPolicy> > >'} changed in GCC 7.1 In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/awh.h:69, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/mimic.cpp:53: /usr/include/c++/9/bits/stl_vector.h: In member function 'void gmx::Integrator::do_mimic()': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/mimic.cpp:465:21: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 465 | do_force(fplog, cr, ms, ir, awh, enforcedRotation, | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 | step, nrnb, wcycle, top, groups, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 | state->box, state->x.arrayRefWithPadding(), &state->hist, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 | f.arrayRefWithPadding(), force_vir, mdatoms, enerd, fcd, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 | state->lambda, graph, | ~~~~~~~~~~~~~~~~~~~~~ 470 | fr, ppForceWorkload, vsite, mu_tot, t, ed, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 | GMX_FORCE_NS | force_flags, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 | ddOpenBalanceRegion, ddCloseBalanceRegion); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/mimic.cpp:482:37: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 482 | do_md_trajectory_writing(fplog, cr, nfile, fnm, step, step_rel, t, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 | ir, state, state_global, observablesHistory, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 | top_global, fr, | ~~~~~~~~~~~~~~~ 485 | outf, mdebin, ekind, f, | ~~~~~~~~~~~~~~~~~~~~~~~ 486 | isCheckpointingStep, doRerun, isLastStep, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 | mdrunOptions.writeConfout, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 | bSumEkinhOld); | ~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/awh.h:69, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/mimic.cpp:53: /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::HostAllocationPolicy> > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/mimic.cpp:544:31: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 544 | dd_collect_vec(cr->dd, state, flocal, ftemp); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/mimic.cpp:554:45: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 554 | mimicCommunicator.sendForces(ftemp, state_global->natoms); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/mimic.cpp:569:21: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 569 | sum_dhdl(enerd, state->lambda, ir->fepvals); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrunutility/handlerestart.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/minimize.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/minimize.cpp: In function 'void write_em_traj(FILE*, const t_commrec*, gmx_mdoutf_t, gmx_bool, gmx_bool, const char*, gmx_mtop_t*, t_inputrec*, int64_t, em_state_t*, t_state*, ObservablesHistory*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/minimize.cpp:551:37: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 551 | mdoutf_write_to_trajectory_files(fplog, cr, outf, mdof_flags, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 | top_global, step, static_cast(step), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 | &state->s, state_global, observablesHistory, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 | state->f); | ~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/minimize.cpp:564:31: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 564 | dd_collect_vec(cr->dd, &state->s, makeArrayRef(state->s.x), globalXRef); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/minimize.cpp: In member function 'void {anonymous}::EnergyEvaluator::run(em_state_t*, real*, real (*)[3], real (*)[3], int64_t, gmx_bool)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/minimize.cpp:872:13: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 872 | do_force(fplog, cr, ms, inputrec, nullptr, nullptr, | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 873 | count, nrnb, wcycle, top, &top_global->groups, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 874 | ems->s.box, ems->s.x.arrayRefWithPadding(), &ems->s.hist, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 875 | ems->f.arrayRefWithPadding(), force_vir, mdAtoms->mdatoms(), enerd, fcd, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 876 | ems->s.lambda, graph, fr, ppForceWorkload, vsite, mu_tot, t, nullptr, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 877 | GMX_FORCE_STATECHANGED | GMX_FORCE_ALLFORCES | | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 878 | GMX_FORCE_VIRIAL | GMX_FORCE_ENERGY | | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 879 | (bNS ? GMX_FORCE_NS : 0), | ~~~~~~~~~~~~~~~~~~~~~~~~~ 880 | DOMAINDECOMP(cr) ? | ~~~~~~~~~~~~~~~~~~ 881 | DdOpenBalanceRegionBeforeForceComputation::yes : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 882 | DdOpenBalanceRegionBeforeForceComputation::no, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 883 | DOMAINDECOMP(cr) ? | ~~~~~~~~~~~~~~~~~~ 884 | DdCloseBalanceRegionAfterForceComputation::yes : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 885 | DdCloseBalanceRegionAfterForceComputation::no); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/minimize.cpp:939:13: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 939 | sum_dhdl(enerd, ems->s.lambda, inputrec->fepvals); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/minimize.cpp:54: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = gmx::BasicVector; _Alloc = gmx::Allocator, gmx::AlignedAllocationPolicy>]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/minimize.cpp: In function 'void init_em(FILE*, const gmx::MDLogger&, const char*, const t_commrec*, const gmx_multisim_t*, gmx::IMDOutputProvider*, t_inputrec*, const MdrunOptions&, t_state*, gmx_mtop_t*, em_state_t*, gmx_localtop_t**, t_nrnb*, real*, t_forcerec*, gmx_enerdata_t**, t_graph**, gmx::MDAtoms*, gmx_global_stat**, gmx_vsite_t*, gmx::Constraints*, gmx_shellfc_t**, int, const t_filenm*, gmx_mdoutf**, t_mdebin**, gmx_wallcycle_t)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/minimize.cpp:377:27: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 377 | initialize_lambdas(fplog, ir, &(state_global->fep_state), state_global->lambda, nullptr); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/minimize.cpp:377:27: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/minimize.cpp:54: /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/minimize.cpp: In member function 'void gmx::Integrator::do_lbfgs()': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/minimize.cpp:1935:41: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 1935 | mdoutf_write_to_trajectory_files(fplog, cr, outf, mdof_flags, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1936 | top_global, step, static_cast(step), &ems.s, state_global, observablesHistory, ems.f); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/minimize.cpp:54: /usr/include/c++/9/bits/stl_vector.h: In function 'bool do_em_step(const t_commrec*, t_inputrec*, t_mdatoms*, em_state_t*, real, const gmx::PaddedVector >*, em_state_t*, gmx::Constraints*, int64_t)': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/mdmodules.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrunutility/mdmodules.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrunutility/mdmodules.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrunutility/threadaffinity.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/abstractsection.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/abstractsection.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/abstractsection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/behaviorcollection.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/behaviorcollection.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/behaviorcollection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/abstractoption.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/abstractoption.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/abstractoption.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/tpi.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/filenm.h:48, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/tpi.cpp:55: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = gmx::BasicVector; _Alloc = gmx::Allocator, gmx::AlignedAllocationPolicy>]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/filenm.h:48, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/tpi.cpp:55: /usr/include/c++/9/bits/stl_vector.h: In member function 'void gmx::Integrator::do_tpi()': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/tpi.cpp:647:21: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 647 | do_force(fplog, cr, ms, inputrec, nullptr, nullptr, | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 | step, nrnb, wcycle, top, &top_global->groups, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 | state_global->box, state_global->x.arrayRefWithPadding(), &state_global->hist, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 | f.arrayRefWithPadding(), force_vir, mdatoms, enerd, fcd, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 | state_global->lambda, | ~~~~~~~~~~~~~~~~~~~~~ 652 | nullptr, fr, ppForceWorkload, nullptr, mu_tot, t, nullptr, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 653 | GMX_FORCE_NONBONDED | GMX_FORCE_ENERGY | | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 654 | (bNS ? GMX_FORCE_DYNAMICBOX | GMX_FORCE_NS : 0) | | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 | (bStateChanged ? GMX_FORCE_STATECHANGED : 0), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 | DdOpenBalanceRegionBeforeForceComputation::no, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 | DdCloseBalanceRegionAfterForceComputation::no); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/runner.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/filenm.h:48, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/runner.h:50, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/runner.cpp:46: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = gmx::BasicVector; _Alloc = gmx::Allocator, gmx::HostAllocationPolicy>]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector, gmx::Allocator, gmx::HostAllocationPolicy> >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::HostAllocationPolicy> > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/filenm.h:48, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/runner.h:50, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/runner.cpp:46: /usr/include/c++/9/bits/stl_vector.h: In function 'void gmx::changePinningPolicy(gmx::HostVector*, gmx::PinningPolicy) [with T = gmx::BasicVector]': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::HostAllocationPolicy> > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/runner.cpp: In member function 'int gmx::Mdrunner::mdrunner()': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/runner.cpp:922:43: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 922 | cr->dd = init_domain_decomposition(mdlog, cr, domdecOptions, mdrunOptions, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 923 | &mtop, inputrec, | ~~~~~~~~~~~~~~~~ 924 | box, positionsFromStatePointer(globalState.get()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 925 | &atomSets); | ~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/runner.cpp:1278:38: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 1278 | constructVsitesGlobal(mtop, globalState->x); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/filenameoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/filenameoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/filenameoptionmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsection.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsection.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/optionsection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/filenameoption.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/filenameoption.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/filenameoption.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsassigner.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsassigner.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/optionsassigner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/options.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/options.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/options.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsvisitor.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsvisitor.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/optionsvisitor.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/restraint/manager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/restraint/manager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/restraint/manager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/timeunitmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/timeunitmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/timeunitmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/restraint/restraintmdmodule.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/restraint/restraintpotential.h:60, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/restraint/restraintmdmodule.h:49, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/restraint/restraintmdmodule.cpp:38: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const int&}; _Tp = gmx::Site; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In constructor 'gmx::RestraintForceProvider::RestraintForceProvider(std::shared_ptr, const std::vector&)': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/findallgputasks.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/findallgputasks.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/findallgputasks.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/reportgpuusage.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/reportgpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/reportgpuusage.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/decidegpuusage.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/decidegpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/decidegpuusage.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/resourcedivision.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/resourcedivision.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/resourcedivision.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/treesupport.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/treesupport.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/treesupport.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/taskassignment.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/taskassignment.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/taskassignment.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/usergpuids.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/usergpuids.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/usergpuids.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectory/energyframe.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/utility/baseversion-gen.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectory/trajectoryframe.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mimic/MimicUtils.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mimic/MimicUtils.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mimic/MimicUtils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mimic/MimicCommunicator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mimic/MimicCommunicator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mimic/MimicCommunicator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/hostallocator.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mimic/MimicCommunicator.h:39, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mimic/MimicCommunicator.cpp:37: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mimic/MimicCommunicator.cpp: In member function 'void gmx::MimicCommunicator::sendForces(gmx::ArrayRef >, int)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mimic/MimicCommunicator.cpp:260:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 260 | void gmx::MimicCommunicator::sendForces(gmx::ArrayRef forces, int natoms) | ^~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/basicoptions.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/basicoptions.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.h:50, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.cpp:44: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.h:50, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.cpp:44: /usr/include/c++/9/bits/stl_vector.h: In member function 'virtual void gmx::DoubleOptionStorage::processSetValues(gmx::OptionStorageTemplate::ValueList*)': /usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 957 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.h:50, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.cpp:44: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.h:50, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.cpp:44: /usr/include/c++/9/bits/stl_vector.h: In member function 'void gmx::OptionStorageTemplate::addValue(const T&) [with T = double]': /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h: In member function 'void gmx::OptionValueStoreVector::append(const T&) [with T = double]': /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h: In member function 'void gmx::OptionValueStoreNull::append(const T&) [with T = double]': /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.h:50, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.cpp:44: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.h:50, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.cpp:44: /usr/include/c++/9/bits/stl_vector.h: In member function 'void gmx::OptionStorageTemplate::addValue(const T&) [with T = long long int]': /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h: In member function 'void gmx::OptionValueStoreNull::append(const T&) [with T = long long int]': /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h: In member function 'void gmx::OptionValueStoreVector::append(const T&) [with T = long long int]': /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [100%] Linking CXX static library ../../lib/libgromacs_mdrun_mpich_d.a cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/cmake -P CMakeFiles/libgromacs.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/cmake -E cmake_link_script CMakeFiles/libgromacs.dir/link.txt --verbose=1 /usr/bin/ar qc 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CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.cpp.o /usr/bin/ranlib ../../lib/libgromacs_mdrun_mpich_d.a make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [100%] Built target libgromacs make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' cd /builddir/build/BUILD/gromacs-2019.6/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/programs /builddir/build/BUILD/gromacs-2019.6/mpich_d /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/programs /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/programs/CMakeFiles/mdrun.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/programs/CMakeFiles/mdrun.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/programs/CMakeFiles/mdrun.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/programs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/programs/CMakeFiles/mdrun.dir/depend.internal". Scanning dependencies of target mdrun make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [100%] Building CXX object src/programs/CMakeFiles/mdrun.dir/mdrun_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/mdrun.dir/mdrun_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun_main.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [100%] Linking CXX executable ../../bin/mdrun_mpich_d cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/programs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun.dir/link.txt --verbose=1 /usr/bin/c++ -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrun.dir/mdrun_main.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -o ../../bin/mdrun_mpich_d ../../lib/libgromacs_mdrun_mpich_d.a /usr/lib/mpich/lib/libmpi.so -fopenmp /usr/lib/libtng_io.so.1.8.2 /usr/lib/libhwloc.so -lrt /usr/lib/mpich/lib/libmpi.so /usr/lib/libfftw3.so -lopenblas -lpthread -lm /usr/lib/liblmfit.so make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [100%] Built target mdrun make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019.6/mpich_d/CMakeFiles 0 + popd ~/build/BUILD/gromacs-2019.6 + test -n mpich + module unload mpi/mpich-arm ++ /usr/share/lmod/lmod/libexec/lmod sh unload mpi/mpich-arm + eval unset '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' unset 'LD_LIBRARY_PATH;' unset '__LMOD_REF_COUNT_LOADEDMODULES;' unset 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' unset 'MPI_BIN;' unset 'MPI_COMPILER;' unset 'MPI_FORTRAN_MOD_DIR;' unset 'MPI_HOME;' unset 'MPI_INCLUDE;' unset 'MPI_LIB;' unset 'MPI_MAN;' unset 'MPI_PYTHON2_SITEARCH;' unset 'MPI_PYTHON3_SITEARCH;' unset 'MPI_PYTHON_SITEARCH;' unset 'MPI_SUFFIX;' unset 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=:/usr/lib/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' unset '__LMOD_REF_COUNT__LMFILES_;' unset '_LMFILES_;' '_ModuleTable001_=X01vZHVsZVRhYmxlXz17WyJNVHZlcnNpb24iXT0zLFsiY19yZWJ1aWxkVGltZSJdPWZhbHNlLFsiY19zaG9ydFRpbWUiXT1mYWxzZSxkZXB0aFQ9e30sZmFtaWx5PXt9LG1UPXt9LG1wYXRoQT17Ii9ldGMvbW9kdWxlZmlsZXMiLCIvdXNyL3NoYXJlL21vZHVsZWZpbGVzIiwiL3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eCIsIi91c3Ivc2hhcmUvbW9kdWxlZmlsZXMvQ29yZSIsIi91c3Ivc2hhcmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0sWyJzeXN0ZW1CYXNlTVBBVEgiXT0iL2V0Yy9tb2R1bGVmaWxlczovdXNyL3NoYXJlL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXMvTGludXg6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9Db3JlOi91c3Ivc2hh;' export '_ModuleTable001_;' '_ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0=;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ unset __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ unset LD_LIBRARY_PATH ++ unset __LMOD_REF_COUNT_LOADEDMODULES ++ unset LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1 ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ unset MPI_BIN ++ unset MPI_COMPILER ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset MPI_INCLUDE ++ unset MPI_LIB ++ unset MPI_MAN ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_PYTHON_SITEARCH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=:/usr/lib/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset __LMOD_REF_COUNT__LMFILES_ ++ unset _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0= ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + for mpi in '' mpich openmpi + test -n openmpi + module load mpi/openmpi-arm ++ /usr/share/lmod/lmod/libexec/lmod sh load mpi/openmpi-arm + eval '__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib/openmpi/lib:1;' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH=/usr/lib/openmpi/lib;' export 'LD_LIBRARY_PATH;' '__LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-arm:1;' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES=mpi/openmpi-arm;' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/man/openmpi-arm:1\;/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=:/usr/share/man/openmpi-arm:/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' 'MPI_BIN=/usr/lib/openmpi/bin;' export 'MPI_BIN;' 'MPI_COMPILER=openmpi-arm;' export 'MPI_COMPILER;' 'MPI_FORTRAN_MOD_DIR=/usr/lib/gfortran/modules/openmpi;' export 'MPI_FORTRAN_MOD_DIR;' 'MPI_HOME=/usr/lib/openmpi;' export 'MPI_HOME;' 'MPI_INCLUDE=/usr/include/openmpi-arm;' export 'MPI_INCLUDE;' 'MPI_LIB=/usr/lib/openmpi/lib;' export 'MPI_LIB;' 'MPI_MAN=/usr/share/man/openmpi-arm;' export 'MPI_MAN;' 'MPI_PYTHON2_SITEARCH=/usr/lib/python2.7/site-packages/openmpi;' export 'MPI_PYTHON2_SITEARCH;' 'MPI_PYTHON3_SITEARCH=/usr/lib/python3.7/site-packages/openmpi;' export 'MPI_PYTHON3_SITEARCH;' 'MPI_PYTHON_SITEARCH=/usr/lib/python2.7/site-packages/openmpi;' export 'MPI_PYTHON_SITEARCH;' 'MPI_SUFFIX=_openmpi;' export 'MPI_SUFFIX;' 'MPI_SYSCONFIG=/etc/openmpi-arm;' export 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/lib/openmpi/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/lib/openmpi/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib/openmpi/lib/pkgconfig:1\;/usr/lib/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=/usr/lib/openmpi/lib/pkgconfig::/usr/lib/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' '__LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-arm:1;' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_=/usr/share/modulefiles/mpi/openmpi-arm;' export '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=aWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib/openmpi/lib:1 ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ LD_LIBRARY_PATH=/usr/lib/openmpi/lib ++ export LD_LIBRARY_PATH ++ __LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-arm:1 ++ export __LMOD_REF_COUNT_LOADEDMODULES ++ LOADEDMODULES=mpi/openmpi-arm ++ export LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH='/usr/share/man/openmpi-arm:1;/usr/share/lmod/lmod/share/man:1' ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=:/usr/share/man/openmpi-arm:/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ MPI_BIN=/usr/lib/openmpi/bin ++ export MPI_BIN ++ MPI_COMPILER=openmpi-arm ++ export MPI_COMPILER ++ MPI_FORTRAN_MOD_DIR=/usr/lib/gfortran/modules/openmpi ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib/openmpi ++ export MPI_HOME ++ MPI_INCLUDE=/usr/include/openmpi-arm ++ export MPI_INCLUDE ++ MPI_LIB=/usr/lib/openmpi/lib ++ export MPI_LIB ++ MPI_MAN=/usr/share/man/openmpi-arm ++ export MPI_MAN ++ MPI_PYTHON2_SITEARCH=/usr/lib/python2.7/site-packages/openmpi ++ export MPI_PYTHON2_SITEARCH ++ MPI_PYTHON3_SITEARCH=/usr/lib/python3.7/site-packages/openmpi ++ export MPI_PYTHON3_SITEARCH ++ MPI_PYTHON_SITEARCH=/usr/lib/python2.7/site-packages/openmpi ++ export MPI_PYTHON_SITEARCH ++ MPI_SUFFIX=_openmpi ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/openmpi-arm ++ export MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/lib/openmpi/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/lib/openmpi/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib/openmpi/lib/pkgconfig:1;/usr/lib/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=/usr/lib/openmpi/lib/pkgconfig::/usr/lib/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ __LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-arm:1 ++ export __LMOD_REF_COUNT__LMFILES_ ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-arm ++ export _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=aWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ== ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + mkdir -p openmpi_d ~/build/BUILD/gromacs-2019.6/openmpi_d ~/build/BUILD/gromacs-2019.6 + pushd openmpi_d + test -z openmpi + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -I/usr/lib/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -I/usr/lib/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS ++ test -n openmpi ++ echo -DGMX_BUILD_MDRUN_ONLY:BOOL=ON -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_BINARY_SUFFIX=_openmpi_d -DGMX_LIBS_SUFFIX=_openmpi_d -DCMAKE_INSTALL_BINDIR=/usr/lib/openmpi/bin ++ test -n _d ++ echo -DGMX_DOUBLE:BOOL=ON + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_TESTING:BOOL=ON -DCMAKE_SKIP_RPATH:BOOL=ON -DCMAKE_SKIP_BUILD_RPATH:BOOL=ON -DGMX_BLAS_USER=openblas -DGMX_BUILD_UNITTESTS:BOOL=ON -DGMX_EXTERNAL_LMFIT:BOOL=ON -DGMX_USE_LMFIT=external -DGMX_EXTERNAL_TNG:BOOL=ON -DGMX_EXTERNAL_TINYXML2:BOOL=OFF -DGMX_LAPACK_USER=openblas -DGMX_USE_RDTSCP=OFF -DGMX_SIMD=None ' ' -DGMX_BUILD_MDRUN_ONLY:BOOL=ON -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_BINARY_SUFFIX=_openmpi_d -DGMX_LIBS_SUFFIX=_openmpi_d -DCMAKE_INSTALL_BINDIR=/usr/lib/openmpi/bin -DGMX_DOUBLE:BOOL=ON .. -- The C compiler identification is GNU 9.2.1 -- The CXX compiler identification is GNU 9.2.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Performing Test CXXFLAG_STD_CXX0X -- Performing Test CXXFLAG_STD_CXX0X - Success -- Performing Test CXX11_SUPPORTED -- Performing Test CXX11_SUPPORTED - Success -- Performing Test CXX11_STDLIB_PRESENT -- Performing Test CXX11_STDLIB_PRESENT - Success CMake Warning at cmake/gmxManageGPU.cmake:53 (message): GPU acceleration is not available in double precision, disabled! Call Stack (most recent call first): CMakeLists.txt:226 (include) -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file regex.h -- Looking for include file regex.h - found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Looking for fedisableexcept in m -- Looking for fedisableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - not found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - not found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - not supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Check if the system is big endian -- Searching 16 bit integer -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- Found MPI_C: /usr/lib/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/openmpi/lib/libmpi_cxx.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Checking for MPI_IN_PLACE -- Performing Test MPI_IN_PLACE_COMPILE_OK -- Performing Test MPI_IN_PLACE_COMPILE_OK - Success -- Checking for MPI_IN_PLACE - yes -- hwloc version: -- Found Hwloc: /usr/lib/libhwloc.so (found suitable version "2.0.4", minimum required is "1.5") -- Looking for C++ include pthread.h -- Looking for C++ include pthread.h - found -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Detected build CPU vendor - ARM -- Detected build CPU brand - ARMv7 Processor rev 2 (v7l) -- Detected build CPU family - 7 -- Detected build CPU model - 3 -- Detected build CPU stepping - 2 -- Detected build CPU features - neon -- Disabling RDTSCP support -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present with _FILE_OFFSET_BITS=64 -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Looking for C++ include regex -- Looking for C++ include regex - found -- Checking for system XDR support -- Checking for system XDR support - not present -- SIMD instructions disabled -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- Checking for module 'fftw3' -- Found fftw3, version 3.3.8 -- Looking for fftw_plan_many_dft in /usr/lib/libfftw3.so -- Looking for fftw_plan_many_dft in /usr/lib/libfftw3.so - found -- Looking for fftw_plan_many_dft_r2c in /usr/lib/libfftw3.so -- Looking for fftw_plan_many_dft_r2c in /usr/lib/libfftw3.so - found -- Looking for fftw_plan_many_dft_c2r in /usr/lib/libfftw3.so -- Looking for fftw_plan_many_dft_c2r in /usr/lib/libfftw3.so - found -- Looking for fftw_have_simd_sse in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_sse in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_sse in /usr/lib/libfftw3.so -- Looking for fftw_have_sse in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_simd_sse2 in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_sse2 in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_sse2 in /usr/lib/libfftw3.so -- Looking for fftw_have_sse2 in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_simd_avx in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_avx in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_simd_avx2 in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_avx2 in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_simd_avx2_128 in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_avx2_128 in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_simd_avx512 in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_avx512 in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_simd_avx_128_fma in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_avx_128_fma in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_simd_avx_512 in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_avx_512 in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_simd_kcvi in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_kcvi in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_simd_altivec in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_altivec in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_simd_neon in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_neon in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_simd_vsx in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_vsx in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_simd_altivec in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_altivec in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_altivec in /usr/lib/libfftw3.so -- Looking for fftw_have_altivec in /usr/lib/libfftw3.so - not found -- Using external FFT library - FFTW3 -- Checking that user BLAS library openblas works -- Looking for dgemm_ -- Looking for dgemm_ - found -- Checking that user LAPACK library openblas works -- Looking for cheev_ -- Looking for cheev_ - found -- Checking for dlopen -- Performing Test HAVE_DLOPEN -- Performing Test HAVE_DLOPEN - Success -- Checking for dlopen - found -- GROMACS only supports plugins in a build that uses shared libraries, which can be disabled for various reasons. BUILD_SHARED_LIBS=on and a toolchain that supports dynamic linking is required. (Hint: GMX_PREFER_STATIC_LIBS and GMX_BUILD_MDRUN_ONLY can influence the default BUILD_SHARED_LIBS, so if you need plugins, reconsider those choices.) -- Not using dynamic plugins (e.g VMD-supported file formats) -- Using manually set binary suffix: "_openmpi_d" -- Using manually set library suffix: "_openmpi_d" -- Performing Test HAS_NO_UNUSED_VARIABLE -- Performing Test HAS_NO_UNUSED_VARIABLE - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Performing Test HAS_NO_MISSING_DECL -- Performing Test HAS_NO_MISSING_DECL - Success -- Performing Test HAS_NO_MISSING_PROTO -- Performing Test HAS_NO_MISSING_PROTO - Failed -- Performing Test HAS_NO_MSVC_UNUSED -- Performing Test HAS_NO_MSVC_UNUSED - Failed -- Performing Test HAS_DECL_IN_SOURCE -- Performing Test HAS_DECL_IN_SOURCE - Failed -- Performing Test LMFIT_LINKS_OK -- Performing Test LMFIT_LINKS_OK - Success -- Found lmfit: /usr/include (found version "8.2") -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE GMX_EXTERNAL_LMFIT INCLUDE_INSTALL_DIR LIB_INSTALL_DIR SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/gromacs-2019.6/openmpi_d + /usr/bin/make -O -j5 V=1 VERBOSE=1 /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2019.6 -B/builddir/build/BUILD/gromacs-2019.6/openmpi_d --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019.6/openmpi_d/CMakeFiles /builddir/build/BUILD/gromacs-2019.6/openmpi_d/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/programs /builddir/build/BUILD/gromacs-2019.6/openmpi_d /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/programs /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/programs/CMakeFiles/mdrun_objlib.dir/depend.internal". 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Scanning dependencies of target mdrun_objlib make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/openmpi_d /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs/CMakeFiles/libgromacs_external.dir/depend.internal". 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Scanning dependencies of target libgromacs_external make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/openmpi_d /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs/CMakeFiles/libgromacs_generated.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs/CMakeFiles/libgromacs_generated.dir/depend.internal". Scanning dependencies of target libgromacs_generated make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/eigensolver.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/eigensolver.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/eigensolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/matrix.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/matrix.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/matrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/sparsematrix.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/sparsematrix.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/sparsematrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/errhandler.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/errhandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/tmpi_malloc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/nrjac.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/nrjac.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/nrjac.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/atomic.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/atomic.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/atomic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/lock.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/lock.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/lock.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/pthreads.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/pthreads.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/system_error.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/system_error.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/system_error.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 1%] Building CXX object src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/mdrun.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 2%] Built target mdrun_objlib make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 3%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 3%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 3%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/gmx_arpack.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/gmx_arpack.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp In file included from /usr/include/string.h:495, from /usr/include/c++/9/cstring:42, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:41: In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2046:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2050:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2054:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2058:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2022:25: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2074:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2089:25: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4910:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4914:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4918:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4922:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_smake[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' trncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4886:25: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4938:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4953:25: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dseupd_(int*, const char*, int*, double*, double*, int*, double*, const char*, int*, const char*, int*, double*, double*, int*, double*, int*, int*, int*, double*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2507:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dseupd_(int*, const char*, int*, double*, double*, int*, double*, const char*, int*, const char*, int*, double*, double*, int*, double*, int*, int*, int*, double*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2503:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dseupd_(int*, const char*, int*, double*, double*, int*, double*, const char*, int*, const char*, int*, double*, double*, int*, double*, int*, int*, int*, double*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2499:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dseupd_(int*, const char*, int*, double*, double*, int*, double*, const char*, int*, const char*, int*, double*, double*, int*, double*, int*, int*, int*, double*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2495:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void sseupd_(int*, const char*, int*, float*, float*, int*, float*, const char*, int*, const char*, int*, float*, float*, int*, float*, int*, int*, int*, float*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:5371:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void sseupd_(int*, const char*, int*, float*, float*, int*, float*, const char*, int*, const char*, int*, float*, float*, int*, float*, int*, int*, int*, float*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:5367:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void sseupd_(int*, const char*, int*, float*, float*, int*, float*, const char*, int*, const char*, int*, float*, float*, int*, float*, int*, int*, int*, float*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:5363:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void sseupd_(int*, const char*, int*, float*, float*, int*, float*, const char*, int*, const char*, int*, float*, float*, int*, float*, int*, int*, int*, float*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:5359:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 3%] Built target libgromacs_external make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 3%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 3%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 3%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 3%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 3%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 25%] Built target libgromacs_generated make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 25%] Generating baseversion-gen.cpp cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/builddir/build/BUILD/gromacs-2019.6/openmpi_d/VersionInfo.cmake -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/baseversion-gen.cpp.cmakein -D VERSION_OUT=utility/baseversion-gen.cpp -D GMX_SOURCE_DOI=10.5281/zenodo.3685922 -P /builddir/build/BUILD/gromacs-2019.6/cmake/gmxConfigureVersionInfo.cmake cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/cmake -E touch utility/baseversion-gen.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/openmpi_d /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs/CMakeFiles/libgromacs.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs/CMakeFiles/libgromacs.dir/depend.internal". Scanning dependencies of target libgromacs make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlinemodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlineinit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlinehelpcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlineoptionsmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlinehelpwriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlineparser.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/filenm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlinemodulemanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlinehelpmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlineprogramcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/viewit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/shellcompletions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/atomdistribution.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/pargs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/box.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/box.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/box.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/box.cpp: In function 'void low_set_ddbox(int, int, const int (*)[3], const real (*)[3], bool, gmx::ArrayRef >, ompi_communicator_t* const*, gmx_ddbox_t*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/box.cpp:235:13: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 235 | static void low_set_ddbox(int numPbcDimensions, | ^~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/box.cpp: In function 'void set_ddbox(const gmx_domdec_t&, bool, const real (*)[3], bool, gmx::ArrayRef >, gmx_ddbox_t*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/box.cpp:282:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 282 | void set_ddbox(const gmx_domdec_t &dd, | ^~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/box.cpp:296:22: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 296 | low_set_ddbox(dd.npbcdim, dd.numBoundedDimensions, | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 | &dd.nc, box, calculateUnboundedSize, xRef, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 | needToReduceCoordinateData ? &dd.mpi_comm_all : nullptr, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 | ddbox); | ~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/box.cpp:296:22: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/box.cpp: In function 'void set_ddbox_cr(const t_commrec&, const int (*)[3], const t_inputrec&, const real (*)[3], gmx::ArrayRef >, gmx_ddbox_t*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/box.cpp:308:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 308 | void set_ddbox_cr(const t_commrec &cr, | ^~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/box.cpp:317:22: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 317 | low_set_ddbox(ePBC2npbcdim(ir.ePBC), inputrec2nboundeddim(&ir), | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 | dd_nc, box, true, x, nullptr, ddbox); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/dlbtiming.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/dlb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/collect.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/collect.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/collect.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/collect.cpp: In function 'void dd_collect_vec(gmx_domdec_t*, const t_state*, gmx::ArrayRef >, gmx::ArrayRef >)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/collect.cpp:247:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 247 | void dd_collect_vec(gmx_domdec_t *dd, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/collect.cpp:247:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/collect.cpp: In function 'void dd_collect_state(gmx_domdec_t*, const t_state*, t_state*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/collect.cpp:310:23: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 310 | dd_collect_vec(dd, state_local, makeConstArrayRef(state_local->x), globalXRef); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/collect.cpp:315:23: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 315 | dd_collect_vec(dd, state_local, makeConstArrayRef(state_local->v), globalVRef); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/collect.cpp:320:23: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 320 | dd_collect_vec(dd, state_local, makeConstArrayRef(state_local->cg_p), globalCgpRef); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/cellsizes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_network.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_network.cpp: In function 'void ddSendrecv(const gmx_domdec_t*, int, int, gmx::ArrayRef, gmx::ArrayRef) [with T = double]': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_network.cpp:128:1: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 128 | ddSendrecv(const gmx_domdec_t *dd, | ^~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_network.cpp:128:1: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_network.cpp:128:1: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_network.cpp: In function 'void ddSendrecv(const gmx_domdec_t*, int, int, gmx::ArrayRef, gmx::ArrayRef) [with T = gmx::BasicVector]': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_network.cpp:128:1: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_network.cpp:128:1: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_network.cpp:128:1: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/distribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_setup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_constraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_vsite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_specatomcomm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/localatomset.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/ga2la.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/dump.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/dump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/localatomsetdata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/localatomsetmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp: In function 'gmx_bool test_dd_cutoff(t_commrec*, const t_state&, real)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp:3015:14: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 3015 | set_ddbox(*dd, false, state.box, true, state.x, &ddbox); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp: In function 'void set_dd_limits_and_grid(const gmx::MDLogger&, t_commrec*, gmx_domdec_t*, const DomdecOptions&, const MdrunOptions&, const gmx_mtop_t*, const t_inputrec*, const real (*)[3], gmx::ArrayRef >, gmx_ddbox_t*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp:2137:13: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 2137 | static void set_dd_limits_and_grid(const gmx::MDLogger &mdlog, | ^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp:2358:21: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 2358 | set_ddbox_cr(*cr, &dd->nc, *ir, box, xGlobal, ddbox); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp:2383:21: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 2383 | set_ddbox_cr(*cr, nullptr, *ir, box, xGlobal, ddbox); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp: In function 'gmx_domdec_t* init_domain_decomposition(const gmx::MDLogger&, t_commrec*, const DomdecOptions&, const MdrunOptions&, const gmx_mtop_t*, const t_inputrec*, const real (*)[3], gmx::ArrayRef >, gmx::LocalAtomSetManager*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp:2953:15: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 2953 | gmx_domdec_t *init_domain_decomposition(const gmx::MDLogger &mdlog, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp:2979:27: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 2979 | set_dd_limits_and_grid(mdlog, cr, dd, options, mdrunOptions, | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2980 | mtop, ir, | ~~~~~~~~~ 2981 | box, xGlobal, | ~~~~~~~~~~~~~ 2982 | &ddbox); | ~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp: In function 'void dd_atom_spread_real(gmx_domdec_t*, real*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp:598:23: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 598 | ddSendrecv(dd, d, dddirBackward, | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 599 | sendBuffer, receiveBuffer); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp:598:23: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp:598:23: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp: In function 'void dd_atom_sum_real(gmx_domdec_t*, real*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp:664:23: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 664 | ddSendrecv(dd, d, dddirForward, | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 665 | sendBuffer, receiveBuffer); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp:664:23: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp:664:23: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp: In function 'void dd_move_x(gmx_domdec_t*, real (*)[3], gmx::ArrayRef >, gmx_wallcycle*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp:296:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 296 | void dd_move_x(gmx_domdec_t *dd, | ^~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp:386:23: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 386 | ddSendrecv(dd, d, dddirBackward, | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 387 | sendBuffer, receiveBuffer); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp:386:23: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp:386:23: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp: In function 'void dd_move_f(gmx_domdec_t*, gmx::ArrayRef >, real (*)[3], gmx_wallcycle*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp:408:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 408 | void dd_move_f(gmx_domdec_t *dd, | ^~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp:472:23: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 472 | ddSendrecv(dd, d, dddirForward, | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 473 | sendBuffer, receiveBuffer); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp:472:23: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp:472:23: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/utility.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/utility.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/utility.h:45, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/utility.cpp:45: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = gmx::BasicVector; _Alloc = gmx::Allocator, gmx::AlignedAllocationPolicy>]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/utility.h:45, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/utility.cpp:45: /usr/include/c++/9/bits/stl_vector.h: In function 'void dd_resize_state(t_state*, gmx::PaddedVector >*, int)': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/3dtransforms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_topology.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_topology.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_topology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/functions.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/functions.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/functions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/do_fit.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/do_fit.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/do_fit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/units.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/units.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/units.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/redistribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/utilities.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/utilities.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/utilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/invertmatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/veccompare.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/veccompare.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/veccompare.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/vecdump.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/vecdump.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/vecdump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/md_enums.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/df_history.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/iforceprovider.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/observableshistory.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/inputrec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/helpmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/state.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/state.cpp: In function 'real (* makeRvecArray(gmx::ArrayRef >, gmx::index))[3]': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/state.cpp:207:7: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 207 | rvec *makeRvecArray(gmx::ArrayRef v, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/state.h:59, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/state.cpp:40: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/state.h:59, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/state.cpp:40: /usr/include/c++/9/bits/stl_vector.h: In function 'void init_gtc_state(t_state*, int, int, int)': /usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 957 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 957 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 957 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 957 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 957 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/state.h:59, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/state.cpp:40: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = gmx::BasicVector; _Alloc = gmx::Allocator, gmx::HostAllocationPolicy>]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector, gmx::Allocator, gmx::HostAllocationPolicy> >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::HostAllocationPolicy> > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = gmx::BasicVector; _Alloc = gmx::Allocator, gmx::AlignedAllocationPolicy>]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >'} changed in GCC 7.1 In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/state.h:59, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/state.cpp:40: /usr/include/c++/9/bits/stl_vector.h: In function 'void state_change_natoms(t_state*, int)': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::HostAllocationPolicy> > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/helpformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/boxutilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/helptopic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/rstparser.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc-simd.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/pbc-simd.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/pbc-simd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/partition.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.cpp: In function 'void dd_move_cellx(gmx_domdec_t*, const gmx_ddbox_t*, real*, real*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.cpp:259:23: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 259 | ddSendrecv(dd, d, dddirBackward, | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 260 | gmx::arrayRefFromArray(&buf_s[0].min0, numReals), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 | gmx::arrayRefFromArray(&buf_r[0].min0, numReals)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.cpp:259:23: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.cpp:259:23: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.h:48, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.cpp:46: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Tp = gmx::BasicVector; _Alloc = std::allocator >]': /usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 721 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.h:48, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.cpp:46: /usr/include/c++/9/bits/stl_vector.h: In function 'void setup_dd_communication(gmx_domdec_t*, real (*)[3], gmx_ddbox_t*, t_forcerec*, t_state*, gmx::PaddedVector >*)': /usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 1662 | _M_range_insert(__pos, __first, __last, | ^~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.cpp:2236:34: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 2236 | ddSendrecv(dd, dim_ind, dddirBackward, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2237 | work.positionBuffer, rvecBufferRef); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.cpp:2236:34: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.cpp:2236:34: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.cpp: In function 'void dd_partition_system(FILE*, const gmx::MDLogger&, int64_t, const t_commrec*, gmx_bool, int, t_state*, const gmx_mtop_t*, const t_inputrec*, t_state*, gmx::PaddedVector >*, gmx::MDAtoms*, gmx_localtop_t*, t_forcerec*, gmx_vsite_t*, gmx::Constraints*, t_nrnb*, gmx_wallcycle*, gmx_bool)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.cpp:3244:18: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 3244 | set_ddbox(*dd, true, | ~~~~~~~~~^~~~~~~~~~~ 3245 | DDMASTER(dd) ? state_global->box : nullptr, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3246 | true, xGlobal, | ~~~~~~~~~~~~~~ 3247 | &ddbox); | ~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.cpp:3297:18: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 3297 | set_ddbox(*dd, bMasterState, state_local->box, | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3298 | true, state_local->x, &ddbox); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.cpp:3316:18: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 3316 | set_ddbox(*dd, bMasterState, state_local->box, | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3317 | bNStGlobalComm, state_local->x, &ddbox); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.cpp:3336:39: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 3336 | comm->updateGroupsCog->addCogs(gmx::arrayRefFromArray(dd->globalAtomGroupIndices.data(), dd->ncg_home), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3337 | state_local->x); | ~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.cpp:3336:39: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.cpp:3364:43: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 3364 | comm->updateGroupsCog->addCogs(gmx::arrayRefFromArray(dd->globalAtomGroupIndices.data(), dd->ncg_home), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3365 | state_local->x); | ~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.cpp:3364:43: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.cpp:3419:34: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 3419 | nbnxn_put_on_grid(fr->nbv->nbs.get(), fr->ePBC, state_local->box, | make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3420 | 0, | ~~ 3421 | comm->zones.size[0].bb_x0, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 3422 | comm->zones.size[0].bb_x1, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 3423 | comm->updateGroupsCog.get(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3424 | 0, dd->ncg_home, | ~~~~~~~~~~~~~~~~ 3425 | comm->zones.dens_zone0, | ~~~~~~~~~~~~~~~~~~~~~~~ 3426 | fr->cginfo, | ~~~~~~~~~~~ 3427 | state_local->x, | ~~~~~~~~~~~~~~~ 3428 | ncg_moved, bRedist ? comm->movedBuffer.data() : nullptr, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3429 | fr->nbv->grp[eintLocal].kernel_type, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3430 | fr->nbv->nbat); | ~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/random/seed.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/random/seed.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/seed.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/rmpbc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tabulatednormaldistribution.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/helpwritercontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/mshift.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/pbc.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/pbc.cpp: In function 'void put_atoms_in_box(int, const real (*)[3], gmx::ArrayRef >)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/pbc.cpp:1413:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 1413 | void put_atoms_in_box(int ePBC, const matrix box, gmx::ArrayRef x) | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/pbc.cpp: In function 'void put_atoms_in_triclinic_unitcell(int, const real (*)[3], gmx::ArrayRef >)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/pbc.cpp:1473:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 1473 | void put_atoms_in_triclinic_unitcell(int ecenter, const matrix box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/pbc.cpp: In function 'void put_atoms_in_compact_unitcell(int, int, const real (*)[3], gmx::ArrayRef >)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/pbc.cpp:1531:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 1531 | void put_atoms_in_compact_unitcell(int ePBC, int ecenter, const matrix box, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/pbc.cpp:1531:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/forcetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/splineutil.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/splineutil.cpp: In function 'real gmx::internal::findSmallestQuotientOfFunctionAndSecondDerivative(gmx::ArrayRef, double, const std::pair&)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/splineutil.cpp:212:1: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 212 | findSmallestQuotientOfFunctionAndSecondDerivative(ArrayRef function, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/splineutil.cpp: In function 'real gmx::internal::findSmallestQuotientOfFunctionAndThirdDerivative(gmx::ArrayRef, double, const std::pair&)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/splineutil.cpp:290:1: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 290 | findSmallestQuotientOfFunctionAndThirdDerivative(ArrayRef function, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/splineutil.cpp: In function 'void gmx::internal::throwUnlessDerivativeIsConsistentWithFunction(gmx::ArrayRef, gmx::ArrayRef, double, const std::pair&)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/splineutil.cpp:112:1: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 112 | throwUnlessDerivativeIsConsistentWithFunction(ArrayRef function, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/splineutil.cpp:112:1: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/splineutil.cpp: In function 'std::vector gmx::internal::vectorSecondDerivative(gmx::ArrayRef, double)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/splineutil.cpp:309:1: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 309 | vectorSecondDerivative(ArrayRef f, double spacing) | ^~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/walltime_accounting.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/cubicsplinetable.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/cubicsplinetable.cpp: In constructor 'gmx::CubicSplineTable::CubicSplineTable(std::initializer_list, const std::pair&, real)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/cubicsplinetable.cpp:397:1: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 397 | CubicSplineTable::CubicSplineTable(std::initializer_list numericalInputList, | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/cubicsplinetable.cpp:397:1: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/wallcycle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/atomprop.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atoms.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/atoms.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/atoms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/block.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/block.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/block.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/quadraticsplinetable.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/quadraticsplinetable.cpp: In constructor 'gmx::QuadraticSplineTable::QuadraticSplineTable(std::initializer_list, const std::pair&, real)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/quadraticsplinetable.cpp:361:1: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 361 | QuadraticSplineTable::QuadraticSplineTable(std::initializer_list numericalInputList, | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/quadraticsplinetable.cpp:170:100: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 170 | std::vector thirdDerivative(internal::vectorSecondDerivative(derivative, inputSpacing)); | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/atomsbuilder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/ifunc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/forcefieldparameters.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/exclusionblocks.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/invblock.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/invblock.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/invblock.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/idef.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/idef.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/idef.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/residuetypes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/symtab.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/symtab.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/symtab.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/alignedallocator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/index.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/index.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/index.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/baseversion.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/topsort.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/topsort.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/topsort.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/basenetwork.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/topology.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/topology.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/topology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/compare.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/compare.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/compare.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/binaryinformation.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/binaryinformation.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/binaryinformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/coolstuff.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/errorcodes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/cstringutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/mtop_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 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-grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/fileredirector.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/fatalerror.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/directoryenumerator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/datafilefinder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/exceptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/gmxassert.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/filestream.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/filestream.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/filestream.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/futil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/futil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/futil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/gmxomp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/init.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/init.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/init.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxregex.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/gmxregex.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/gmxregex.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/int64_to_int.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/ikeyvaluetreeerror.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/inmemoryserializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/logger.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/logger.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/logger.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/messagestringcollector.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/messagestringcollector.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/messagestringcollector.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/keyvaluetree.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/loggerbuilder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/niceheader.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/pleasecite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/programcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/physicalnodecommunicator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/smalloc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/keyvaluetreeserializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/strdb.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/strdb.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/strdb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/path.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/path.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/sysinfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/stringstream.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/txtdump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/textreader.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/textreader.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/textreader.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/variant.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/variant.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/variant.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/stringutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/textwriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/confio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/confio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/confio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/filetypes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/espio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/espio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/espio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/gmx_internal_xdr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/g96io.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/enxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio-xdr.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmxfio-xdr.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/gmxfio-xdr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/keyvaluetreetransform.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/gmxfio.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/gmxfio.h:44, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/gmxfio.cpp:39: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {}; _Tp = gmx_file_position_t; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In function 'std::vector gmx_fio_get_output_file_positions()': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/md5.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/md5.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/md5.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/groio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/groio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/groio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/libxdrf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/mtxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/oenv.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/timecontrol.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/matio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/matio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/matio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/checkpoint.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/trrio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/pdbio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/warninp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/tngio.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/arrayref.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/tngio.h:42, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/tngio.cpp:37: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/arrayref.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/tngio.h:42, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/tngio.cpp:37: /usr/include/c++/9/bits/stl_vector.h: In function 'void gmx_tng_add_mtop(gmx_tng_trajectory_t, const gmx_mtop_t*)': /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/trxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/writeps.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/xdrd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/xtcio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/xvgr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/readinp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/swap/swapcoords.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/swap/swapcoords.cpp:51: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gmx::LocalAtomSet}; _Tp = swap_group; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/include/c++/9/bits/vector.tcc: In function 'void init_swapcoords(FILE*, t_inputrec*, const char*, gmx_mtop_t*, const t_state*, ObservablesHistory*, t_commrec*, gmx::LocalAtomSetManager*, const gmx_output_env_t*, const MdrunOptions&)': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/output.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pulling/output.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/output.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/tpxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/essentialdynamics/edsam.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/filenm.h:48, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/essentialdynamics/edsam.cpp:46: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {edpar&}; _Tp = edpar; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In function 'std::unique_ptr init_edsam(const gmx::MDLogger&, const char*, const char*, const gmx_mtop_t*, const t_inputrec*, const t_commrec*, gmx::Constraints*, const t_state*, ObservablesHistory*, const gmx_output_env_t*, gmx_bool)': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pull.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pull.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pull.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/arrayref.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pull.h:58, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pull.cpp:39: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {t_pull_group&, gmx::LocalAtomSet, const bool&}; _Tp = pull_group_work_t; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {t_pull_coord&}; _Tp = pull_coord_work_t; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const t_pull_group&, const gmx::LocalAtomSet&, bool&}; _Tp = pull_group_work_t; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/include/c++/9/bits/vector.tcc: In function 'pull_t* init_pull(FILE*, const pull_params_t*, const t_inputrec*, const gmx_mtop_t*, const t_commrec*, gmx::LocalAtomSetManager*, real)': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/arrayref.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pull.h:58, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pull.cpp:39: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/arrayref.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pull.h:58, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pull.cpp:39: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pull.cpp:2259:1: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 2259 | } | ^ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pull.cpp:2259:1: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pull.cpp:2259:1: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pullutil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pullutil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pullutil.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pullutil.cpp: In function 'bool pullCheckPbcWithinGroup(const pull_t&, gmx::ArrayRef >, const t_pbc&, int, real)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pullutil.cpp:963:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 963 | bool pullCheckPbcWithinGroup(const pull_t &pull, | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/stringutil.h:50, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/network.h:48, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pullutil.cpp:45: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/stringutil.h:50, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/network.h:48, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pullutil.cpp:45: /usr/include/c++/9/bits/stl_vector.h: In function 'void allocStatePrevStepPullCom(t_state*, pull_t*)': /usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 957 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/bias.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/bias.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp: In member function 'void gmx::Bias::updateForceCorrelationGrid(gmx::ArrayRef, double)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp:378:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 378 | void Bias::updateForceCorrelationGrid(gmx::ArrayRef probWeightNeighbor, | ^~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp:399:45: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 399 | state_.calcUmbrellaForceAndPotential(dimParams_, grid_, indexNeighbor, forceFromNeighbor); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp:70: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/correlationgrid.h:107:41: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 107 | tensors_[pointIndex].addData(weight, data, blockLengthMeasure == BlockLengthMeasure::Weight, t); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp: In member function 'gmx::ArrayRef gmx::Bias::calcForceAndUpdateBias(const double*, double*, double*, const t_commrec*, const gmx_multisim_t*, double, int64_t, int64_t, FILE*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp:144:39: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 144 | updateForceCorrelationGrid(probWeightNeighbor, t); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp:162:34: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 162 | state_.calcConvolvedForce(dimParams_, grid_, probWeightNeighbor, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 | tempForce_, biasForce_); | ~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp:162:34: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp:162:34: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp:162:34: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp:173:49: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 173 | state_.calcUmbrellaForceAndPotential(dimParams_, grid_, coordState.umbrellaGridpoint(), biasForce_); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp:182:54: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 182 | double newPotential = state_.moveUmbrella(dimParams_, grid_, probWeightNeighbor, biasForce_, step, seed, params_.biasIndex); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp:182:54: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp:182:54: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasparams.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasparams.h:53, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasparams.cpp:47: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In constructor 'gmx::BiasParams::BiasParams(const gmx::AwhParams&, const gmx::AwhBiasParams&, const std::vector&, double, double, gmx::BiasParams::DisableUpdateSkips, int, const std::vector&, int)': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biassharing.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/biassharing.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biassharing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pull_rotation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/awh.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/awh.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/awh.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/awh.h:69, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/awh.cpp:47: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double&, const double&, const double&}; _Tp = gmx::DimParams; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gmx::Bias, std::vector >&}; _Tp = gmx::BiasCoupledToSystem; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/include/c++/9/bits/vector.tcc: In constructor 'gmx::Awh::Awh(FILE*, const t_inputrec&, const t_commrec*, const gmx_multisim_t*, const gmx::AwhParams&, const string&, pull_t*)': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/coordstate.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/coordstate.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/coordstate.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/coordstate.cpp: In member function 'void gmx::CoordState::sampleUmbrellaGridpoint(const gmx::Grid&, int, gmx::ArrayRef, int64_t, int64_t, int)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/coordstate.cpp:131:1: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 131 | CoordState::sampleUmbrellaGridpoint(const Grid &grid, | ^~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biaswriter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/biaswriter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biaswriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/correlationhistory.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationgrid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationgrid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/correlationgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationtensor.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationtensor.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/correlationtensor.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/correlationtensor.cpp: In member function 'void gmx::CorrelationTensor::addData(double, gmx::ArrayRef, bool, double)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/correlationtensor.cpp:226:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 226 | void CorrelationTensor::addData(double weight, | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/correlationtensor.cpp:226:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/correlationtensor.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/correlationtensor.cpp:47: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {int&, double}; _Tp = gmx::CorrelationBlockData; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In constructor 'gmx::CorrelationTensor::CorrelationTensor(int, int, double)': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/pointstate.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/pointstate.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/pointstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/histogramsize.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/histogramsize.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/histogramsize.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/histogramsize.cpp: In member function 'double gmx::HistogramSize::newHistogramSizeInitialStage(const gmx::BiasParams&, double, bool, gmx::ArrayRef, FILE*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/histogramsize.cpp:78:8: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 78 | double HistogramSize::newHistogramSizeInitialStage(const BiasParams ¶ms, | ^~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/histogramsize.cpp: In member function 'double gmx::HistogramSize::newHistogramSize(const gmx::BiasParams&, double, bool, const std::vector&, gmx::ArrayRef, FILE*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/histogramsize.cpp:210:8: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 210 | double HistogramSize::newHistogramSize(const BiasParams ¶ms, | ^~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/histogramsize.cpp:242:56: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 242 | newHistogramSize = newHistogramSizeInitialStage(params, t, covered, weightsumCovering, fplog); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/histogramsize.cpp:242:56: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/grid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/grid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/grid.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/dimparams.h:52, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/grid.h:60, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/grid.cpp:47: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double&, double&, double&, double&}; _Tp = gmx::GridAxis; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In constructor 'gmx::Grid::Grid(const std::vector&, const gmx::AwhDimParams*)': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&, const double&, double, int&}; _Tp = gmx::GridAxis; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In function 'void gmx::mapGridToDataGrid(std::vector*, const double* const*, int, const string&, const gmx::Grid&, const string&)': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/grid.cpp:830:1: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 830 | } | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/simd/support.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/simd/support.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/support.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/imd/imdsocket.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp: In function 'void gmx::{anonymous}::sumOverSimulations(gmx::ArrayRef, const t_commrec*, const gmx_multisim_t*) [with T = double]': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:128:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 128 | void sumOverSimulations(gmx::ArrayRef arrayRef, | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp: In function 'void gmx::{anonymous}::updateTargetDistribution(gmx::ArrayRef, const gmx::BiasParams&)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:293:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 293 | void updateTargetDistribution(gmx::ArrayRef pointState, | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp: In member function 'double gmx::BiasState::calcUmbrellaForceAndPotential(const std::vector&, const gmx::Grid&, int, gmx::ArrayRef) const': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:423:8: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 423 | double BiasState::calcUmbrellaForceAndPotential(const std::vector &dimParams, | ^~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp: In member function 'void gmx::BiasState::calcConvolvedForce(const std::vector&, const gmx::Grid&, gmx::ArrayRef, gmx::ArrayRef, gmx::ArrayRef) const': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:443:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 443 | void BiasState::calcConvolvedForce(const std::vector &dimParams, | ^~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:443:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:443:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:463:38: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 463 | calcUmbrellaForceAndPotential(dimParams, grid, indexNeighbor, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 | forceFromNeighbor); | ~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp: In member function 'double gmx::BiasState::moveUmbrella(const std::vector&, const gmx::Grid&, gmx::ArrayRef, gmx::ArrayRef, int64_t, int64_t, int)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:474:8: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 474 | double BiasState::moveUmbrella(const std::vector &dimParams, | ^~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:474:8: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:474:8: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:483:40: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 483 | coordState_.sampleUmbrellaGridpoint(grid, coordState_.gridpointIndex(), probWeightNeighbor, step, seed, indexSeed); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:483:40: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:487:38: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 487 | calcUmbrellaForceAndPotential(dimParams, grid, coordState_.umbrellaGridpoint(), newForce); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp: In member function 'void gmx::BiasState::sampleProbabilityWeights(const gmx::Grid&, gmx::ArrayRef)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:1231:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 1231 | void BiasState::sampleProbabilityWeights(const Grid &grid, | ^~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp: In member function 'void gmx::BiasState::sampleCoordAndPmf(const gmx::Grid&, gmx::ArrayRef, double)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:1286:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 1286 | void BiasState::sampleCoordAndPmf(const Grid &grid, | ^~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp: In member function 'void gmx::BiasState::updateFreeEnergyAndAddSamplesToHistogram(const std::vector&, const gmx::Grid&, const gmx::BiasParams&, const t_commrec*, const gmx_multisim_t*, double, int64_t, FILE*, std::vector*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:1074:62: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 1074 | double newHistogramSize = histogramSize_.newHistogramSize(params, t, detectedCovering, points_, weightSumCovering_, fplog); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:1074:62: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:1074:62: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:1074:62: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:1074:62: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:1074:62: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:1074:62: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp:1074:62: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/read-params.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/read-params.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/read-params.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/conformation-utilities.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/conformation-utilities.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/conformation-utilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/imd/imd.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/imd/imd.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/imd/imd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/chargegroup.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/chargegroup.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/chargegroup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/network.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nrnb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic_cg.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic_cg.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_generic_cg.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_generic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nonbonded.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nonbonded.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nonbonded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_free_energy.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/boxdeformation.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/boxdeformation.cpp: In member function 'void gmx::BoxDeformation::apply(gmx::ArrayRef >, real (*)[3], int64_t)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/boxdeformation.cpp:109:1: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 109 | BoxDeformation::apply(ArrayRef x, | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/calcmu.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/calcmu.cpp: In function 'void calc_mu(int, int, gmx::ArrayRef >, const real*, const real*, int, double*, double*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/calcmu.cpp:50:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 50 | void calc_mu(int start, int homenr, gmx::ArrayRef x, const real q[], const real qB[], | ^~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/checkpointhandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/calcvir.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/compute_io.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/constraintrange.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/constraintrange.cpp: In function 'void gmx::constr_recur(const t_blocka*, const InteractionLists&, gmx::ArrayRef, gmx_bool, int, int, int, int*, real, real, real*, int*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/constraintrange.cpp:60:13: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 60 | static void constr_recur(const t_blocka *at2con, | ^~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/calc_verletbuf.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/calc_verletbuf.cpp: In function 'real maxSigma(real, gmx::ArrayRef)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/calc_verletbuf.cpp:845:13: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 845 | static real maxSigma(real kT_fac, | ^~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/arrayref.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/calc_verletbuf.h:39, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/calc_verletbuf.cpp:37: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {VerletbufAtomtype}; _Tp = VerletbufAtomtype; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In function 'std::vector get_verlet_buffer_atomtypes(const gmx_mtop_t*, bool, int*)': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/ebin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/constr.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/constr.cpp: In function 't_blocka gmx::make_at2con(const gmx_moltype_t&, gmx::ArrayRef, gmx::FlexibleConstraintTreatment)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/constr.cpp:848:10: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 848 | t_blocka make_at2con(const gmx_moltype_t &moltype, | ^~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/broadcaststructs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/broadcaststructs.h:48, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/broadcaststructs.cpp:40: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = gmx::BasicVector; _Alloc = gmx::Allocator, gmx::HostAllocationPolicy>]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector, gmx::Allocator, gmx::HostAllocationPolicy> >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::HostAllocationPolicy> > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/broadcaststructs.h:48, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/broadcaststructs.cpp:40: /usr/include/c++/9/bits/stl_vector.h: In function 'void broadcastStateWithoutDynamics(const t_commrec*, t_state*)': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::HostAllocationPolicy> > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/gmx_omp_nthreads.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/force.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/force.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/force.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/force.cpp: In function 'void sum_dhdl(gmx_enerdata_t*, gmx::ArrayRef, t_lambda*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/force.cpp:698:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 698 | void sum_dhdl(gmx_enerdata_t *enerd, gmx::ArrayRef lambda, t_lambda *fepvals) | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/coupling.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/coupling.cpp: In function 'void andersen_tcoupl(const t_inputrec*, int64_t, const t_commrec*, const t_mdatoms*, gmx::ArrayRef >, real, const gmx_bool*, const real*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/coupling.cpp:781:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 781 | void andersen_tcoupl(const t_inputrec *ir, int64_t step, | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/groupcoord.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/expanded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/md_support.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdatoms.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdatoms.h:43, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdatoms.cpp:39: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = gmx::Allocator]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdatoms.h:43, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdatoms.cpp:39: /usr/include/c++/9/bits/stl_vector.h: In function 'void atoms2md(const gmx_mtop_t*, const t_inputrec*, int, const int*, int, gmx::MDAtoms*)': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h: In member function 'void gmx::MDAtoms::resize(int)': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h: In function 'void gmx::changePinningPolicy(gmx::HostVector*, gmx::PinningPolicy) [with T = double]': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/lincs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdebin_bar.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/forcerec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdoutf.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdoutf.cpp: In function 'void mdoutf_write_to_trajectory_files(FILE*, const t_commrec*, gmx_mdoutf_t, int, gmx_mtop_t*, int64_t, double, t_state*, t_state*, ObservablesHistory*, gmx::ArrayRef >)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdoutf.cpp:247:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 247 | void mdoutf_write_to_trajectory_files(FILE *fplog, const t_commrec *cr, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdoutf.cpp:269:31: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 269 | dd_collect_vec(cr->dd, state_local, makeArrayRef(state_local->x), globalXRef); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdoutf.cpp:274:31: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 274 | dd_collect_vec(cr->dd, state_local, makeArrayRef(state_local->v), globalVRef); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdoutf.cpp:280:27: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 280 | dd_collect_vec(cr->dd, state_local, f_local, gmx::arrayRefFromArray(reinterpret_cast(f_global), f_local.size())); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdsetup.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdsetup.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdsetup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdebin.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdebin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_atomdata.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_atomdata.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_atomdata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/membed.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_grid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_grid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_grid.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_grid.cpp: In function 'void nbnxn_put_on_grid(nbnxn_search_t, int, const real (*)[3], int, const real*, const real*, const gmx::UpdateGroupsCog*, int, int, real, const int*, gmx::ArrayRef >, int, const int*, int, nbnxn_atomdata_t*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_grid.cpp:1416:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 1416 | void nbnxn_put_on_grid(nbnxn_search_t nbs, | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_grid.cpp: In function 'void nbnxn_put_on_grid_nonlocal(nbnxn_search_t, const gmx_domdec_zones_t*, const int*, gmx::ArrayRef >, int, nbnxn_atomdata_t*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_grid.cpp:1520:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 1520 | void nbnxn_put_on_grid_nonlocal(nbnxn_search_t nbs, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_grid.cpp:1536:26: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 1536 | nbnxn_put_on_grid(nbs, nbs->ePBC, nullptr, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 1537 | zone, c0, c1, | ~~~~~~~~~~~~~ 1538 | nullptr, | ~~~~~~~~ 1539 | zones->cg_range[zone], | ~~~~~~~~~~~~~~~~~~~~~~ 1540 | zones->cg_range[zone+1], | ~~~~~~~~~~~~~~~~~~~~~~~~ 1541 | -1, | ~~~ 1542 | atinfo, | ~~~~~~~ 1543 | x, | ~~ 1544 | 0, nullptr, | ~~~~~~~~~~~ 1545 | nb_kernel_type, | ~~~~~~~~~~~~~~~ 1546 | nbat); | ~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nsgrid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nsgrid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nsgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_tuning.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_tuning.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_tuning.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/perf_est.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/qm_gamess.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/qm_mopac.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/qm_orca.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/qm_gaussian.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/rbin.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/rbin.cpp: In function 'int add_binr(t_bin*, gmx::ArrayRef)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/rbin.cpp:103:5: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 103 | int add_binr(t_bin *b, gmx::ArrayRef r) | ^~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/rbin.cpp:103:5: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/rbin.cpp: In function 'void extract_binr(t_bin*, int, gmx::ArrayRef)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/rbin.cpp:160:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 160 | void extract_binr(t_bin *b, int index, gmx::ArrayRef r) | ^~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qmmm.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qmmm.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/qmmm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ns.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/ns.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/ns.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/resethandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/rf_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sighandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/shake.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/settle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/simulationsignal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_search.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_search.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_search.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/splitter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/stat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/stophandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shellfc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/shellfc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/shellfc.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/shellfc.h:43, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/shellfc.cpp:39: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = gmx::BasicVector; _Alloc = gmx::Allocator, gmx::AlignedAllocationPolicy>]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/shellfc.h:43, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/shellfc.cpp:39: /usr/include/c++/9/bits/stl_vector.h: In function 'void relax_shell_flexcon(FILE*, const t_commrec*, const gmx_multisim_t*, gmx_bool, gmx_enfrot*, int64_t, const t_inputrec*, gmx_bool, int, gmx_localtop_t*, gmx::Constraints*, gmx_enerdata_t*, t_fcdata*, t_state*, gmx::ArrayRefWithPadding >, real (*)[3], const t_mdatoms*, t_nrnb*, gmx_wallcycle_t, t_graph*, const gmx_groups_t*, gmx_shellfc_t*, t_forcerec*, gmx::PpForceWorkload*, double, real*, const gmx_vsite_t*, DdOpenBalanceRegionBeforeForceComputation, DdCloseBalanceRegionAfterForceComputation)': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/shellfc.cpp:1144:13: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 1144 | do_force(fplog, cr, ms, inputrec, nullptr, enforcedRotation, | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1145 | mdstep, nrnb, wcycle, top, groups, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1146 | state->box, state->x.arrayRefWithPadding(), &state->hist, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1147 | forceWithPadding[Min], force_vir, md, enerd, fcd, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1148 | state->lambda, graph, | ~~~~~~~~~~~~~~~~~~~~~ 1149 | fr, ppForceWorkload, vsite, mu_tot, t, nullptr, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1150 | (bDoNS ? GMX_FORCE_NS : 0) | shellfc_flags, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1151 | ddOpenBalanceRegion, ddCloseBalanceRegion); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/shellfc.cpp:1254:17: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 1254 | do_force(fplog, cr, ms, inputrec, nullptr, enforcedRotation, | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1255 | 1, nrnb, wcycle, | ~~~~~~~~~~~~~~~~ 1256 | top, groups, state->box, posWithPadding[Try], &state->hist, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1257 | forceWithPadding[Try], force_vir, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1258 | md, enerd, fcd, state->lambda, graph, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1259 | fr, ppForceWorkload, vsite, mu_tot, t, nullptr, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1260 | shellfc_flags, | ~~~~~~~~~~~~~~ 1261 | ddOpenBalanceRegion, ddCloseBalanceRegion); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/trajectory_writing.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/trajectory_writing.cpp: In function 'void do_md_trajectory_writing(FILE*, t_commrec*, int, const t_filenm*, int64_t, int64_t, double, t_inputrec*, t_state*, t_state*, ObservablesHistory*, gmx_mtop_t*, t_forcerec*, gmx_mdoutf_t, t_mdebin*, gmx_ekindata_t*, gmx::ArrayRef >, gmx_bool, gmx_bool, gmx_bool, gmx_bool, gmx_bool)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/trajectory_writing.cpp:57:1: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 57 | do_md_trajectory_writing(FILE *fplog, | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/trajectory_writing.cpp:164:41: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 164 | mdoutf_write_to_trajectory_files(fplog, cr, outf, mdof_flags, top_global, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 | step, t, state, state_global, observablesHistory, f); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/tgroup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp: In function 'void computeSpecialForces(FILE*, const t_commrec*, const t_inputrec*, gmx::Awh*, gmx_enfrot*, int64_t, double, gmx_wallcycle_t, ForceProviders*, real (*)[3], gmx::ArrayRef >, const t_mdatoms*, real*, int, gmx::ForceWithVirial*, gmx_enerdata_t*, gmx_edsam*, gmx_bool)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:796:1: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 796 | computeSpecialForces(FILE *fplog, | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp: In function 'void put_atoms_in_box_omp(int, const real (*)[3], gmx::ArrayRef >)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:2722:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 2722 | void put_atoms_in_box_omp(int ePBC, const matrix box, gmx::ArrayRef x) | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp: In function 'void initialize_lambdas(FILE*, t_inputrec*, int*, gmx::ArrayRef, double*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:2875:13: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 2875 | extern void initialize_lambdas(FILE *fplog, t_inputrec *ir, int *fep_state, gmx::ArrayRef lambda, double *lam0) | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp: In function 'void init_md(FILE*, const t_commrec*, gmx::IMDOutputProvider*, t_inputrec*, const gmx_output_env_t*, const MdrunOptions&, double*, double*, t_state*, double*, t_nrnb*, gmx_mtop_t*, gmx_update_t**, gmx::BoxDeformation*, int, const t_filenm*, gmx_mdoutf**, t_mdebin**, real (*)[3], real (*)[3], real (*)[3], real (*)[3], real*, gmx_bool*, t_vcm**, gmx_wallcycle_t)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:2973:27: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 2973 | initialize_lambdas(fplog, ir, &globalState->fep_state, globalState->lambda, lam0); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:2973:27: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:2979:27: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 2979 | initialize_lambdas(fplog, ir, &tmpFepState, tmpLambda, lam0); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:2979:27: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp: In function 'void init_rerun(FILE*, const t_commrec*, gmx::IMDOutputProvider*, t_inputrec*, const gmx_output_env_t*, const MdrunOptions&, t_state*, double*, t_nrnb*, gmx_mtop_t*, int, const t_filenm*, gmx_mdoutf**, t_mdebin**, gmx_wallcycle_t)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:3047:27: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 3047 | initialize_lambdas(fplog, ir, &globalState->fep_state, globalState->lambda, lam0); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:3047:27: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:3053:27: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 3053 | initialize_lambdas(fplog, ir, &tmpFepState, tmpLambda, lam0); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:3053:27: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp: In function 'void do_force(FILE*, const t_commrec*, const gmx_multisim_t*, const t_inputrec*, gmx::Awh*, gmx_enfrot*, int64_t, t_nrnb*, gmx_wallcycle_t, gmx_localtop_t*, const gmx_groups_t*, real (*)[3], gmx::ArrayRefWithPadding >, history_t*, gmx::ArrayRefWithPadding >, real (*)[3], const t_mdatoms*, gmx_enerdata_t*, t_fcdata*, gmx::ArrayRef, t_graph*, t_forcerec*, gmx::PpForceWorkload*, const gmx_vsite_t*, real*, double, gmx_edsam*, int, DdOpenBalanceRegionBeforeForceComputation, DdCloseBalanceRegionAfterForceComputation)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:2120:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 2120 | void do_force(FILE *fplog, | ^~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:1175:30: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 1175 | nbnxn_put_on_grid(nbv->nbs.get(), fr->ePBC, box, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1176 | 0, vzero, box_diag, | ~~~~~~~~~~~~~~~~~~~ 1177 | nullptr, 0, mdatoms->homenr, -1, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1178 | fr->cginfo, x.unpaddedArrayRef(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1179 | 0, nullptr, | ~~~~~~~~~~~ 1180 | nbv->grp[eintLocal].kernel_type, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1181 | nbv->nbat); | ~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:1187:39: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 1187 | nbnxn_put_on_grid_nonlocal(nbv->nbs.get(), domdec_zones(cr->dd), | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1188 | fr->cginfo, x.unpaddedArrayRef(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1189 | nbv->grp[eintNonlocal].kernel_type, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1190 | nbv->nbat); | ~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:1187:39: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:1575:25: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 1575 | computeSpecialForces(fplog, cr, inputrec, awh, enforcedRotation, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1576 | step, t, wcycle, | ~~~~~~~~~~~~~~~~ 1577 | fr->forceProviders, box, x.unpaddedArrayRef(), mdatoms, lambda, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1578 | flags, &forceWithVirial, enerd, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1579 | make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' ed, bNS); | ~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:1627:22: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 1627 | dd_move_f(cr->dd, force.unpaddedArrayRef(), fr->fshift, wcycle); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:2048:25: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 2048 | computeSpecialForces(fplog, cr, inputrec, awh, enforcedRotation, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2049 | step, t, wcycle, | ~~~~~~~~~~~~~~~~ 2050 | fr->forceProviders, box, x.unpaddedArrayRef(), mdatoms, lambda, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2051 | flags, &forceWithVirial, enerd, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2052 | ed, bNS); | ~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:2059:22: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 2059 | dd_move_f(cr->dd, force.unpaddedArrayRef(), fr->fshift, wcycle); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:2070:26: note: parameter passing for argument of type 'const gmx::ArrayRef >' changed in GCC 7.1 2070 | dd_move_f(cr->dd, forceWithVirial.force_, nullptr, wcycle); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:1575:25: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 1575 | computeSpecialForces(fplog, cr, inputrec, awh, enforcedRotation, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1576 | step, t, wcycle, | ~~~~~~~~~~~~~~~~ 1577 | fr->forceProviders, box, x.unpaddedArrayRef(), mdatoms, lambda, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1578 | flags, &forceWithVirial, enerd, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1579 | ed, bNS); | ~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:1575:25: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:1575:25: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/vcm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/updategroupscog.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/updategroupscog.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/updategroupscog.cpp:45: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gmx::BasicVector&}; _Tp = gmx::BasicVector; _Alloc = std::allocator >]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/updategroupscog.cpp: In member function 'void gmx::UpdateGroupsCog::addCogs(gmx::ArrayRef, gmx::ArrayRef >)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/updategroupscog.cpp:85:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 85 | void UpdateGroupsCog::addCogs(gmx::ArrayRef globalAtomIndices, | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/updategroupscog.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/updategroupscog.cpp:45: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/updategroups.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/wall.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wnblist.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/wnblist.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/wnblist.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/update.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/update.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/update.cpp: In function 'void update_pcouple_after_coordinates(FILE*, int64_t, const t_inputrec*, const t_mdatoms*, const real (*)[3], const real (*)[3], const real (*)[3], const real (*)[3], t_state*, t_nrnb*, gmx_update_t*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/update.cpp:1781:27: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 1781 | upd->deform->apply(localX, state->box, step); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/update.cpp: In function 'gmx_bool update_randomize_velocities(const t_inputrec*, int64_t, const t_commrec*, const t_mdatoms*, gmx::ArrayRef >, const gmx_update_t*, const gmx::Constraints*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/update.cpp:1920:17: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 1920 | extern gmx_bool update_randomize_velocities(const t_inputrec *ir, int64_t step, const t_commrec *cr, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/update.cpp:1944:24: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 1944 | andersen_tcoupl(ir, step, cr, md, v, rate, | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 1945 | upd->sd->randomize_group, upd->sd->boltzfac); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/update.h:40, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/update.cpp:39: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = gmx::BasicVector; _Alloc = gmx::Allocator, gmx::AlignedAllocationPolicy>]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/update.h:40, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/update.cpp:39: /usr/include/c++/9/bits/stl_vector.h: In function 'void update_realloc(gmx_update_t*, int)': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h: In function 'gmx_update_t* init_update(const t_inputrec*, gmx::BoxDeformation*)': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/disre.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/disre.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/disre.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/gpubonded-impl.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/gpubonded-impl.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/gpubonded-impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/listed-forces.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/listed-forces.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/listed-forces.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied-forces/electricfield.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/applied-forces/electricfield.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/applied-forces/electricfield.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/listed-internal.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/listed-internal.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/listed-internal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/bonded.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/bonded.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/bonded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/manage-threading.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/manage-threading.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/manage-threading.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/vsite.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/vsite.cpp: In function 'void constructVsitesGlobal(const gmx_mtop_t&, gmx::ArrayRef >)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/vsite.cpp:758:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 758 | void constructVsitesGlobal(const gmx_mtop_t &mtop, | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/vsite.cpp:758:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/idef.h:43, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/vsite.h:44, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/vsite.cpp:39: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = gmx::BasicVector; _Alloc = std::allocator >]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/idef.h:43, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/vsite.h:44, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/vsite.cpp:39: /usr/include/c++/9/bits/stl_vector.h: In function '_Z25split_vsites_over_threadsPK7t_ilistPK9t_iparamsPK9t_mdatomsP11gmx_vsite_t._omp_fn.0': /usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 957 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/position-restraints.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/position-restraints.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/position-restraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/pairs.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/pairs.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/pairs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/restcbt.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/restcbt.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/restcbt.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/orires.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/orires.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/orires.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald-utils.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/ewald-utils.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/ewald-utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/calculate-spline-moduli.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/calculate-spline-moduli.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/calculate-spline-moduli.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/ewald.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-gather.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gather.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-gather.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/long-range-correction.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/long-range-correction.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/long-range-correction.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-grid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-grid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-grid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-pp.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-pp.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-pp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-load-balancing.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-load-balancing.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-load-balancing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-redistribute.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-redistribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-spline-work.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-spline-work.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-spline-work.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-gpu-program-impl.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gpu-program-impl.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-gpu-program-impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-gpu-program.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gpu-program.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-gpu-program.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-solve.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-solve.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-solve.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fft/fft.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fft/calcgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-only.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-only.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-only.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-only.cpp:72: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = gmx::Allocator]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-only.cpp:72: /usr/include/c++/9/bits/stl_vector.h: In function 'void gmx::changePinningPolicy(gmx::HostVector*, gmx::PinningPolicy) [with T = double]': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-only.cpp:72: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = gmx::BasicVector; _Alloc = gmx::Allocator, gmx::HostAllocationPolicy>]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector, gmx::Allocator, gmx::HostAllocationPolicy> >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::HostAllocationPolicy> > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-only.cpp:72: /usr/include/c++/9/bits/stl_vector.h: In function 'void gmx::changePinningPolicy(gmx::HostVector*, gmx::PinningPolicy) [with T = gmx::BasicVector]': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::HostAllocationPolicy> > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h: In function 'int gmx_pmeonly(gmx_pme_t*, const t_commrec*, t_nrnb*, gmx_wallcycle*, gmx_walltime_accounting_t, t_inputrec*, PmeRunMode)': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::HostAllocationPolicy> > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-spread.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-spread.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-spread.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fft/parallel_3dfft.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/clfftinitializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fft/fft_fftw3.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/hostallocator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/gpu_hw_info.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/gpu_hw_info.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/gpu_hw_info.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fft/fft5d.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/gpu_utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/identifyavx512fmaunits.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/detecthardware.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/printhardware.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/integrator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/integrator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/integrator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/legacymdrunoptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/logging.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/logging.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/logging.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/cpuinfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/multisim.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/multisim.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/multisim.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/hardwaretopology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/replicaexchange.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/rerun.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/awh.h:69, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/rerun.cpp:52: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = gmx::BasicVector; _Alloc = gmx::Allocator, gmx::AlignedAllocationPolicy>]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/awh.h:69, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/rerun.cpp:52: /usr/include/c++/9/bits/stl_vector.h: In member function 'void gmx::Integrator::do_rerun()': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/rerun.cpp:580:21: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 580 | do_force(fplog, cr, ms, ir, awh, enforcedRotation, | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 | step, nrnb, wcycle, top, groups, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 | state->box, state->x.arrayRefWithPadding(), &state->hist, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 | f.arrayRefWithPadding(), force_vir, mdatoms, enerd, fcd, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 | state->lambda, graph, | ~~~~~~~~~~~~~~~~~~~~~ 585 | fr, ppForceWorkload, vsite, mu_tot, t, ed, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 | GMX_FORCE_NS | force_flags, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 | ddOpenBalanceRegion, ddCloseBalanceRegion); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/rerun.cpp:597:37: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 597 | do_md_trajectory_writing(fplog, cr, nfile, fnm, step, step_rel, t, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 | ir, state, state_global, observablesHistory, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 | top_global, fr, | ~~~~~~~~~~~~~~~ 600 | outf, mdebin, ekind, f, | ~~~~~~~~~~~~~~~~~~~~~~~ 601 | isCheckpointingStep, doRerun, isLastStep, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 | mdrunOptions.writeConfout, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 603 | bSumEkinhOld); | ~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/rerun.cpp:661:21: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 661 | sum_dhdl(enerd, state->lambda, ir->fepvals); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/md.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/md.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/md.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/awh.h:69, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/md.cpp:54: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = gmx::BasicVector; _Alloc = gmx::Allocator, gmx::AlignedAllocationPolicy>]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/awh.h:69, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/md.cpp:54: /usr/include/c++/9/bits/stl_vector.h: In member function 'void gmx::Integrator::do_md()': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/md.cpp:880:21: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 880 | do_force(fplog, cr, ms, ir, awh.get(), enforcedRotation, | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 881 | step, nrnb, wcycle, top, groups, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 882 | state->box, state->x.arrayRefWithPadding(), &state->hist, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 883 | f.arrayRefWithPadding(), force_vir, mdatoms, enerd, fcd, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 884 | state->lambda, graph, | ~~~~~~~~~~~~~~~~~~~~~ 885 | fr, ppForceWorkload, vsite, mu_tot, t, ed ? ed->getLegacyED() : nullptr, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 886 | (bNS ? GMX_FORCE_NS : 0) | force_flags, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 887 | ddOpenBalanceRegion, ddCloseBalanceRegion); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/md.cpp:1031:25: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 1031 | sum_dhdl(enerd, state->lambda, ir->fepvals); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/md.cpp:1056:33: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 1056 | do_md_trajectory_writing(fplog, cr, nfile, fnm, step, step_rel, t, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1057 | ir, state, state_global, observablesHistory, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1058 | top_global, fr, | ~~~~~~~~~~~~~~~ 1059 | outf, mdebin, ekind, f, | ~~~~~~~~~~~~~~~~~~~~~~~ 1060 | checkpointHandler->isCheckpointingStep(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1061 | bRerunMD, bLastStep, | ~~~~~~~~~~~~~~~~~~~~ 1062 | mdrunOptions.writeConfout, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 1063 | bSumEkinhOld); | ~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/md.cpp:1094:55: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 1094 | bIfRandomize = update_randomize_velocities(ir, step, cr, mdatoms, state->v, upd, constr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/md.cpp:1304:21: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 1304 | sum_dhdl(enerd, state->lambda, ir->fepvals); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/simulationcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/mimic.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/awh.h:69, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/mimic.cpp:53: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = gmx::BasicVector; _Alloc = gmx::Allocator, gmx::AlignedAllocationPolicy>]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = gmx::BasicVector; _Alloc = gmx::Allocator, gmx::HostAllocationPolicy>]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector, gmx::Allocator, gmx::HostAllocationPolicy> >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::HostAllocationPolicy> > >'} changed in GCC 7.1 In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/awh.h:69, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/mimic.cpp:53: /usr/include/c++/9/bits/stl_vector.h: In member function 'void gmx::Integrator::do_mimic()': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/mimic.cpp:465:21: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 465 | do_force(fplog, cr, ms, ir, awh, enforcedRotation, | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 | step, nrnb, wcycle, top, groups, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 | state->box, state->x.arrayRefWithPadding(), &state->hist, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 | f.arrayRefWithPadding(), force_vir, mdatoms, enerd, fcd, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 | state->lambda, graph, | ~~~~~~~~~~~~~~~~~~~~~ 470 | fr, ppForceWorkload, vsite, mu_tot, t, ed, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 | GMX_FORCE_NS | force_flags, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 | ddOpenBalanceRegion, ddCloseBalanceRegion); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/mimic.cpp:482:37: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 482 | do_md_trajectory_writing(fplog, cr, nfile, fnm, step, step_rel, t, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 | ir, state, state_global, observablesHistory, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 | top_global, fr, | ~~~~~~~~~~~~~~~ 485 | outf, mdebin, ekind, f, | ~~~~~~~~~~~~~~~~~~~~~~~ 486 | isCheckpointingStep, doRerun, isLastStep, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 | mdrunOptions.writeConfout, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 | bSumEkinhOld); | ~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/awh.h:69, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/mimic.cpp:53: /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::HostAllocationPolicy> > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/mimic.cpp:544:31: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 544 | dd_collect_vec(cr->dd, state, flocal, ftemp); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/mimic.cpp:554:45: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 554 | mimicCommunicator.sendForces(ftemp, state_global->natoms); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/mimic.cpp:569:21: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 569 | sum_dhdl(enerd, state->lambda, ir->fepvals); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrunutility/handlerestart.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/minimize.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/minimize.cpp: In function 'void write_em_traj(FILE*, const t_commrec*, gmx_mdoutf_t, gmx_bool, gmx_bool, const char*, gmx_mtop_t*, t_inputrec*, int64_t, em_state_t*, t_state*, ObservablesHistory*)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/minimize.cpp:551:37: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 551 | mdoutf_write_to_trajectory_files(fplog, cr, outf, mdof_flags, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 | top_global, step, static_cast(step), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 | &state->s, state_global, observablesHistory, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 | state->f); | ~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/minimize.cpp:564:31: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 564 | dd_collect_vec(cr->dd, &state->s, makeArrayRef(state->s.x), globalXRef); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/minimize.cpp: In member function 'void {anonymous}::EnergyEvaluator::run(em_state_t*, real*, real (*)[3], real (*)[3], int64_t, gmx_bool)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/minimize.cpp:872:13: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 872 | do_force(fplog, cr, ms, inputrec, nullptr, nullptr, | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 873 | count, nrnb, wcycle, top, &top_global->groups, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 874 | ems->s.box, ems->s.x.arrayRefWithPadding(), &ems->s.hist, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 875 | ems->f.arrayRefWithPadding(), force_vir, mdAtoms->mdatoms(), enerd, fcd, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 876 | ems->s.lambda, graph, fr, ppForceWorkload, vsite, mu_tot, t, nullptr, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 877 | GMX_FORCE_STATECHANGED | GMX_FORCE_ALLFORCES | | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 878 | GMX_FORCE_VIRIAL | GMX_FORCE_ENERGY | | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 879 | (bNS ? GMX_FORCE_NS : 0), | ~~~~~~~~~~~~~~~~~~~~~~~~~ 880 | DOMAINDECOMP(cr) ? | ~~~~~~~~~~~~~~~~~~ 881 | DdOpenBalanceRegionBeforeForceComputation::yes : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 882 | DdOpenBalanceRegionBeforeForceComputation::no, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 883 | DOMAINDECOMP(cr) ? | ~~~~~~~~~~~~~~~~~~ 884 | DdCloseBalanceRegionAfterForceComputation::yes : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 885 | DdCloseBalanceRegionAfterForceComputation::no); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/minimize.cpp:939:13: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 939 | sum_dhdl(enerd, ems->s.lambda, inputrec->fepvals); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/minimize.cpp:54: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = gmx::BasicVector; _Alloc = gmx::Allocator, gmx::AlignedAllocationPolicy>]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/minimize.cpp: In function 'void init_em(FILE*, const gmx::MDLogger&, const char*, const t_commrec*, const gmx_multisim_t*, gmx::IMDOutputProvider*, t_inputrec*, const MdrunOptions&, t_state*, gmx_mtop_t*, em_state_t*, gmx_localtop_t**, t_nrnb*, real*, t_forcerec*, gmx_enerdata_t**, t_graph**, gmx::MDAtoms*, gmx_global_stat**, gmx_vsite_t*, gmx::Constraints*, gmx_shellfc_t**, int, const t_filenm*, gmx_mdoutf**, t_mdebin**, gmx_wallcycle_t)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/minimize.cpp:377:27: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 377 | initialize_lambdas(fplog, ir, &(state_global->fep_state), state_global->lambda, nullptr); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/minimize.cpp:377:27: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/minimize.cpp:54: /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/minimize.cpp: In member function 'void gmx::Integrator::do_lbfgs()': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/minimize.cpp:1935:41: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 1935 | mdoutf_write_to_trajectory_files(fplog, cr, outf, mdof_flags, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1936 | top_global, step, static_cast(step), &ems.s, state_global, observablesHistory, ems.f); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/minimize.cpp:54: /usr/include/c++/9/bits/stl_vector.h: In function 'bool do_em_step(const t_commrec*, t_inputrec*, t_mdatoms*, em_state_t*, real, const gmx::PaddedVector >*, em_state_t*, gmx::Constraints*, int64_t)': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrunutility/threadaffinity.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/mdmodules.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrunutility/mdmodules.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrunutility/mdmodules.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/abstractsection.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/abstractsection.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/abstractsection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/behaviorcollection.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/behaviorcollection.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/behaviorcollection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/abstractoption.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/abstractoption.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/abstractoption.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/tpi.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/filenm.h:48, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/tpi.cpp:55: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = gmx::BasicVector; _Alloc = gmx::Allocator, gmx::AlignedAllocationPolicy>]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/filenm.h:48, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/tpi.cpp:55: /usr/include/c++/9/bits/stl_vector.h: In member function 'void gmx::Integrator::do_tpi()': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/tpi.cpp:647:21: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 647 | do_force(fplog, cr, ms, inputrec, nullptr, nullptr, | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 | step, nrnb, wcycle, top, &top_global->groups, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 | state_global->box, state_global->x.arrayRefWithPadding(), &state_global->hist, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 | f.arrayRefWithPadding(), force_vir, mdatoms, enerd, fcd, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 | state_global->lambda, | ~~~~~~~~~~~~~~~~~~~~~ 652 | nullptr, fr, ppForceWorkload, nullptr, mu_tot, t, nullptr, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 653 | GMX_FORCE_NONBONDED | GMX_FORCE_ENERGY | | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 654 | (bNS ? GMX_FORCE_DYNAMICBOX | GMX_FORCE_NS : 0) | | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 | (bStateChanged ? GMX_FORCE_STATECHANGED : 0), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 | DdOpenBalanceRegionBeforeForceComputation::no, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 | DdCloseBalanceRegionAfterForceComputation::no); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/filenameoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/filenameoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/filenameoptionmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/runner.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/filenm.h:48, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/runner.h:50, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/runner.cpp:46: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = gmx::BasicVector; _Alloc = gmx::Allocator, gmx::HostAllocationPolicy>]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector, gmx::Allocator, gmx::HostAllocationPolicy> >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::HostAllocationPolicy> > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/filenm.h:48, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/runner.h:50, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/runner.cpp:46: /usr/include/c++/9/bits/stl_vector.h: In function 'void gmx::changePinningPolicy(gmx::HostVector*, gmx::PinningPolicy) [with T = gmx::BasicVector]': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::HostAllocationPolicy> > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/runner.cpp: In member function 'int gmx::Mdrunner::mdrunner()': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/runner.cpp:922:43: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 922 | cr->dd = init_domain_decomposition(mdlog, cr, domdecOptions, mdrunOptions, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 923 | &mtop, inputrec, | ~~~~~~~~~~~~~~~~ 924 | box, positionsFromStatePointer(globalState.get()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 925 | &atomSets); | ~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/runner.cpp:1278:38: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 1278 | constructVsitesGlobal(mtop, globalState->x); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsection.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsection.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/optionsection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsassigner.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsassigner.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/optionsassigner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsvisitor.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsvisitor.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/optionsvisitor.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/filenameoption.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/filenameoption.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/filenameoption.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/options.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/options.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/options.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/timeunitmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/timeunitmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/timeunitmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/restraint/manager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/restraint/manager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/restraint/manager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/restraint/restraintmdmodule.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/restraint/restraintpotential.h:60, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/restraint/restraintmdmodule.h:49, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/restraint/restraintmdmodule.cpp:38: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const int&}; _Tp = gmx::Site; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In constructor 'gmx::RestraintForceProvider::RestraintForceProvider(std::shared_ptr, const std::vector&)': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/findallgputasks.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/findallgputasks.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/findallgputasks.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/reportgpuusage.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/reportgpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/reportgpuusage.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/decidegpuusage.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/decidegpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/decidegpuusage.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/treesupport.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/treesupport.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/treesupport.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/resourcedivision.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/resourcedivision.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/resourcedivision.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/taskassignment.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/taskassignment.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/taskassignment.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/usergpuids.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/usergpuids.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/usergpuids.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectory/trajectoryframe.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs/utility/baseversion-gen.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectory/energyframe.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mimic/MimicUtils.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mimic/MimicUtils.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mimic/MimicUtils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mimic/MimicCommunicator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mimic/MimicCommunicator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mimic/MimicCommunicator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/hostallocator.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mimic/MimicCommunicator.h:39, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mimic/MimicCommunicator.cpp:37: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mimic/MimicCommunicator.cpp: In member function 'void gmx::MimicCommunicator::sendForces(gmx::ArrayRef >, int)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mimic/MimicCommunicator.cpp:260:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 260 | void gmx::MimicCommunicator::sendForces(gmx::ArrayRef forces, int natoms) | ^~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/basicoptions.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/basicoptions.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.h:50, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.cpp:44: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.h:50, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.cpp:44: /usr/include/c++/9/bits/stl_vector.h: In member function 'virtual void gmx::DoubleOptionStorage::processSetValues(gmx::OptionStorageTemplate::ValueList*)': /usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 957 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.h:50, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.cpp:44: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.h:50, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.cpp:44: /usr/include/c++/9/bits/stl_vector.h: In member function 'void gmx::OptionStorageTemplate::addValue(const T&) [with T = double]': /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h: In member function 'void gmx::OptionValueStoreVector::append(const T&) [with T = double]': /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h: In member function 'void gmx::OptionValueStoreNull::append(const T&) [with T = double]': /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.h:50, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.cpp:44: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.h:50, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.cpp:44: /usr/include/c++/9/bits/stl_vector.h: In member function 'void gmx::OptionStorageTemplate::addValue(const T&) [with T = long long int]': /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h: In member function 'void gmx::OptionValueStoreNull::append(const T&) [with T = long long int]': /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h: In member function 'void gmx::OptionValueStoreVector::append(const T&) [with T = long long int]': /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [100%] Linking CXX static library ../../lib/libgromacs_mdrun_openmpi_d.a cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/cmake -P CMakeFiles/libgromacs.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/cmake -E cmake_link_script CMakeFiles/libgromacs.dir/link.txt --verbose=1 /usr/bin/ar qc 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CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.cpp.o /usr/bin/ranlib ../../lib/libgromacs_mdrun_openmpi_d.a make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [100%] Built target libgromacs make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/programs /builddir/build/BUILD/gromacs-2019.6/openmpi_d /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/programs /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/programs/CMakeFiles/mdrun.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/programs/CMakeFiles/mdrun.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/programs/CMakeFiles/mdrun.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/programs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/programs/CMakeFiles/mdrun.dir/depend.internal". Scanning dependencies of target mdrun make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [100%] Building CXX object src/programs/CMakeFiles/mdrun.dir/mdrun_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-arm -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/mdrun.dir/mdrun_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun_main.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [100%] Linking CXX executable ../../bin/mdrun_openmpi_d cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/programs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun.dir/link.txt --verbose=1 /usr/bin/c++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrun.dir/mdrun_main.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -o ../../bin/mdrun_openmpi_d ../../lib/libgromacs_mdrun_openmpi_d.a /usr/lib/openmpi/lib/libmpi.so -fopenmp /usr/lib/libtng_io.so.1.8.2 /usr/lib/libhwloc.so -lrt /usr/lib/openmpi/lib/libmpi.so /usr/lib/libfftw3.so -lopenblas -lpthread -lm /usr/lib/liblmfit.so make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [100%] Built target mdrun make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019.6/openmpi_d/CMakeFiles 0 + popd ~/build/BUILD/gromacs-2019.6 + test -n openmpi + module unload mpi/openmpi-arm ++ /usr/share/lmod/lmod/libexec/lmod sh unload mpi/openmpi-arm + eval unset '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' unset 'LD_LIBRARY_PATH;' unset '__LMOD_REF_COUNT_LOADEDMODULES;' unset 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' unset 'MPI_BIN;' unset 'MPI_COMPILER;' unset 'MPI_FORTRAN_MOD_DIR;' unset 'MPI_HOME;' unset 'MPI_INCLUDE;' unset 'MPI_LIB;' unset 'MPI_MAN;' unset 'MPI_PYTHON2_SITEARCH;' unset 'MPI_PYTHON3_SITEARCH;' unset 'MPI_PYTHON_SITEARCH;' unset 'MPI_SUFFIX;' unset 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=:/usr/lib/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' unset '__LMOD_REF_COUNT__LMFILES_;' unset '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0=;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ unset __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ unset LD_LIBRARY_PATH ++ unset __LMOD_REF_COUNT_LOADEDMODULES ++ unset LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1 ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ unset MPI_BIN ++ unset MPI_COMPILER ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset MPI_INCLUDE ++ unset MPI_LIB ++ unset MPI_MAN ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_PYTHON_SITEARCH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=:/usr/lib/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset __LMOD_REF_COUNT__LMFILES_ ++ unset _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0= ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.wExH3s + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm '!=' / ']' + rm -rf /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm ++ dirname /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm + cd gromacs-2019.6 + . /etc/profile.d/modules.sh ++ . /etc/profile.d/00-modulepath.sh +++ '[' -z /etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ']' +++ : ++ '[' -z '' ']' ++ '[' -z /usr/share/modulefiles ']' ++ PS_CMD=/usr/bin/ps ++ '[' '!' -x /usr/bin/ps ']' ++ EXPR_CMD=/usr/bin/expr ++ '[' '!' -x /usr/bin/expr ']' ++ BASENAME_CMD=/usr/bin/basename ++ '[' '!' -x /usr/bin/basename ']' +++ /usr/bin/ps -p 23233 -ocomm= ++ my_shell=sh +++ /usr/bin/expr sh : '-*\(.*\)' ++ my_shell=sh +++ /usr/bin/basename sh ++ my_shell=sh ++ '[' -f /usr/share/lmod/lmod/init/sh ']' ++ . /usr/share/lmod/lmod/init/sh +++ LMOD_ROOT=/usr/share/lmod +++ LMOD_PKG=/usr/share/lmod/lmod +++ LMOD_DIR=/usr/share/lmod/lmod/libexec/ +++ LMOD_CMD=/usr/share/lmod/lmod/libexec/lmod +++ MODULESHOME=/usr/share/lmod/lmod +++ export LMOD_CMD +++ export LMOD_PKG +++ export LMOD_DIR +++ export MODULESHOME +++ export LMOD_DIR ++ unset my_shell PS_CMD EXPR_CMD BASENAME_CMD MODULEPATH_INIT + for p in '' _d + for mpi in '' mpich openmpi + test -n '' + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm 'INSTALL=/usr/bin/install -p' -C serial make: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2019.6 -B/builddir/build/BUILD/gromacs-2019.6/serial --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019.6/serial/CMakeFiles /builddir/build/BUILD/gromacs-2019.6/serial/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_generated.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 17%] Built target libgromacs_generated /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_external.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 21%] Built target libgromacs_external /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 98%] Built target libgromacs /usr/bin/make -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/share/template /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/share/template /builddir/build/BUILD/gromacs-2019.6/serial/share/template/CMakeFiles/template.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' /usr/bin/make -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Nothing to be done for 'share/template/CMakeFiles/template.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 98%] Built target template /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/programs /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/programs /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 98%] Built target mdrun_objlib /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/programs /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/programs /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Nothing to be done for 'src/programs/CMakeFiles/view_objlib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [100%] Built target view_objlib /usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/programs /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/programs /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/CMakeFiles/gmx.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' /usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Nothing to be done for 'src/programs/CMakeFiles/gmx.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [100%] Built target gmx /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Nothing to be done for 'src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [100%] Built target mdrun_test_objlib make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019.6/serial/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/share/gromacs/COPYING -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/share/man/man1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/share/man/man1/gmx-chi.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/share/man/man1/gmx-dump.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/share/man/man1/gmx-gangle.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/share/man/man1/gmx-genrestr.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/share/man/man1/gmx-analyze.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/share/man/man1/gmx-bundle.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/share/man/man1/gmx-current.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/share/man/man1/gmx-rmsf.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/share/man/man1/gmx-dielectric.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/share/man/man1/gmx-nmr.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/share/man/man1/gmx-trjcat.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/share/man/man1/gmx-dos.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/share/man/man1/gmx-pdb2gmx.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/share/man/man1/gmx-dyecoupl.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/share/man/man1/gmx-distance.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/share/man/man1/gmx-make_ndx.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/share/man/man1/gmx-do_dssp.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/share/man/man1/gmx-potential.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/share/man/man1/gmx-velacc.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/share/man/man1/gmx-pairdist.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/share/man/man1/gmx-spol.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/share/man/man1/gmx-pme_error.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/share/man/man1/gmx-rmsdist.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/share/man/man1/gmx-genion.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/share/man/man1/gmx-insert-molecules.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/share/man/man1/gmx-gyrate.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/share/man/man1/gmx-helixorient.1 -- Installing: 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/builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/utility/fatalerror.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/utility/flags.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/utility/fileptr.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/utility/futil.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/utility/gmxassert.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/utility/init.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/utility/programcontext.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/utility/real.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/utility/smalloc.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/utility/stringutil.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/utility/unique_cptr.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/fileio/confio.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/fileio/enxio.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/fileio/filetypes.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/fileio/gmxfio.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/fileio/matio.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/fileio/mtxio.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/fileio/oenv.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/fileio/pdbio.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/fileio/rgb.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/fileio/tpxio.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/fileio/trrio.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/fileio/trxio.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/fileio/xdr_datatype.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/fileio/xtcio.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/fileio/xvgr.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/compat/make_unique.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/gmxana/gstat.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/analysisdata/abstractdata.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/analysisdata/analysisdata.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/analysisdata/arraydata.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/analysisdata/dataframe.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/analysisdata/datamodule.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/analysisdata/modules/average.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/analysisdata/modules/displacement.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/analysisdata/modules/histogram.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/analysisdata/modules/lifetime.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/analysisdata/modules/plot.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/selection/nbsearch.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/selection/indexutil.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/selection/position.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/selection/selection.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/selection/selectioncollection.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/selection/selectionenums.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/selection/selectionoption.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/selection/selectionoptionbehavior.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/selection/selectionoptionmanager.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/trajectoryanalysis/analysismodule.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/trajectoryanalysis/analysissettings.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/trajectoryanalysis/cmdlinerunner.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/trajectoryanalysis/topologyinformation.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/bin/gmx -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/bin -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/bin/gmx-completion.bash -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/bin/gmx-completion-gmx.bash make: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' + test -n '' + for mpi in '' mpich openmpi + test -n mpich + module load mpi/mpich-arm ++ /usr/share/lmod/lmod/libexec/lmod sh load mpi/mpich-arm + eval '__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib/mpich/lib:1;' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH=/usr/lib/mpich/lib;' export 'LD_LIBRARY_PATH;' '__LMOD_REF_COUNT_LOADEDMODULES=mpi/mpich-arm:1;' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES=mpi/mpich-arm;' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/man/mpich-arm:1\;/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=:/usr/share/man/mpich-arm:/usr/share/lmod/lmod/share/man;' export 'MANPATH;' '__LMOD_REF_COUNT_MODULEPATH=/etc/modulefiles:1\;/usr/share/modulefiles:1\;/usr/share/modulefiles/Linux:1\;/usr/share/modulefiles/Core:1\;/usr/share/lmod/lmod/modulefiles/Core:1;' export '__LMOD_REF_COUNT_MODULEPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' 'MPI_BIN=/usr/lib/mpich/bin;' export 'MPI_BIN;' 'MPI_COMPILER=mpich-arm;' export 'MPI_COMPILER;' 'MPI_FORTRAN_MOD_DIR=/usr/lib/gfortran/modules/mpich;' export 'MPI_FORTRAN_MOD_DIR;' 'MPI_HOME=/usr/lib/mpich;' export 'MPI_HOME;' 'MPI_INCLUDE=/usr/include/mpich-arm;' export 'MPI_INCLUDE;' 'MPI_LIB=/usr/lib/mpich/lib;' export 'MPI_LIB;' 'MPI_MAN=/usr/share/man/mpich-arm;' export 'MPI_MAN;' 'MPI_PYTHON2_SITEARCH=/usr/lib/python2.7/site-packages/mpich;' export 'MPI_PYTHON2_SITEARCH;' 'MPI_PYTHON3_SITEARCH=/usr/lib/python3.7/site-packages/mpich;' export 'MPI_PYTHON3_SITEARCH;' 'MPI_PYTHON_SITEARCH=/usr/lib/python2.7/site-packages/mpich;' export 'MPI_PYTHON_SITEARCH;' 'MPI_SUFFIX=_mpich;' export 'MPI_SUFFIX;' 'MPI_SYSCONFIG=/etc/mpich-arm;' export 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/lib/mpich/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/lib/mpich/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib/mpich/lib/pkgconfig:1\;/usr/lib/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=/usr/lib/mpich/lib/pkgconfig::/usr/lib/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' '__LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/mpich-arm:1;' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_=/usr/share/modulefiles/mpi/mpich-arm;' export '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=b3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib/mpich/lib:1 ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ LD_LIBRARY_PATH=/usr/lib/mpich/lib ++ export LD_LIBRARY_PATH ++ __LMOD_REF_COUNT_LOADEDMODULES=mpi/mpich-arm:1 ++ export __LMOD_REF_COUNT_LOADEDMODULES ++ LOADEDMODULES=mpi/mpich-arm ++ export LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH='/usr/share/man/mpich-arm:1;/usr/share/lmod/lmod/share/man:1' ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=:/usr/share/man/mpich-arm:/usr/share/lmod/lmod/share/man ++ export MANPATH ++ __LMOD_REF_COUNT_MODULEPATH='/etc/modulefiles:1;/usr/share/modulefiles:1;/usr/share/modulefiles/Linux:1;/usr/share/modulefiles/Core:1;/usr/share/lmod/lmod/modulefiles/Core:1' ++ export __LMOD_REF_COUNT_MODULEPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ MPI_BIN=/usr/lib/mpich/bin ++ export MPI_BIN ++ MPI_COMPILER=mpich-arm ++ export MPI_COMPILER ++ MPI_FORTRAN_MOD_DIR=/usr/lib/gfortran/modules/mpich ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib/mpich ++ export MPI_HOME ++ MPI_INCLUDE=/usr/include/mpich-arm ++ export MPI_INCLUDE ++ MPI_LIB=/usr/lib/mpich/lib ++ export MPI_LIB ++ MPI_MAN=/usr/share/man/mpich-arm ++ export MPI_MAN ++ MPI_PYTHON2_SITEARCH=/usr/lib/python2.7/site-packages/mpich ++ export MPI_PYTHON2_SITEARCH ++ MPI_PYTHON3_SITEARCH=/usr/lib/python3.7/site-packages/mpich ++ export MPI_PYTHON3_SITEARCH ++ MPI_PYTHON_SITEARCH=/usr/lib/python2.7/site-packages/mpich ++ export MPI_PYTHON_SITEARCH ++ MPI_SUFFIX=_mpich ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/mpich-arm ++ export MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/lib/mpich/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/lib/mpich/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib/mpich/lib/pkgconfig:1;/usr/lib/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=/usr/lib/mpich/lib/pkgconfig::/usr/lib/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ __LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/mpich-arm:1 ++ export __LMOD_REF_COUNT__LMFILES_ ++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-arm ++ export _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=b3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ== ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm 'INSTALL=/usr/bin/install -p' -C mpich make: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2019.6 -B/builddir/build/BUILD/gromacs-2019.6/mpich --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019.6/mpich/CMakeFiles /builddir/build/BUILD/gromacs-2019.6/mpich/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' cd /builddir/build/BUILD/gromacs-2019.6/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/mpich /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_external.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 1%] Built target libgromacs_external /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' cd /builddir/build/BUILD/gromacs-2019.6/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/mpich /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_generated.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 24%] Built target libgromacs_generated /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' cd /builddir/build/BUILD/gromacs-2019.6/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/mpich /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 98%] Built target libgromacs /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' cd /builddir/build/BUILD/gromacs-2019.6/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/programs /builddir/build/BUILD/gromacs-2019.6/mpich /builddir/build/BUILD/gromacs-2019.6/mpich/src/programs /builddir/build/BUILD/gromacs-2019.6/mpich/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [100%] Built target mdrun_objlib /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' cd /builddir/build/BUILD/gromacs-2019.6/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/programs /builddir/build/BUILD/gromacs-2019.6/mpich /builddir/build/BUILD/gromacs-2019.6/mpich/src/programs /builddir/build/BUILD/gromacs-2019.6/mpich/src/programs/CMakeFiles/mdrun.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Nothing to be done for 'src/programs/CMakeFiles/mdrun.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [100%] Built target mdrun make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019.6/mpich/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/share/gromacs/COPYING -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/lib/mpich/bin/mdrun_mpich -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/lib/mpich/bin/gmx-completion-mdrun_mpich.bash make: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' + test -n mpich + module unload mpi/mpich-arm ++ /usr/share/lmod/lmod/libexec/lmod sh unload mpi/mpich-arm + eval unset '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' unset 'LD_LIBRARY_PATH;' unset '__LMOD_REF_COUNT_LOADEDMODULES;' unset 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' unset 'MPI_BIN;' unset 'MPI_COMPILER;' unset 'MPI_FORTRAN_MOD_DIR;' unset 'MPI_HOME;' unset 'MPI_INCLUDE;' unset 'MPI_LIB;' unset 'MPI_MAN;' unset 'MPI_PYTHON2_SITEARCH;' unset 'MPI_PYTHON3_SITEARCH;' unset 'MPI_PYTHON_SITEARCH;' unset 'MPI_SUFFIX;' unset 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=:/usr/lib/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' unset '__LMOD_REF_COUNT__LMFILES_;' unset '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0=;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ unset __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ unset LD_LIBRARY_PATH ++ unset __LMOD_REF_COUNT_LOADEDMODULES ++ unset LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1 ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ unset MPI_BIN ++ unset MPI_COMPILER ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset MPI_INCLUDE ++ unset MPI_LIB ++ unset MPI_MAN ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_PYTHON_SITEARCH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=:/usr/lib/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset __LMOD_REF_COUNT__LMFILES_ ++ unset _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0= ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + for mpi in '' mpich openmpi + test -n openmpi + module load mpi/openmpi-arm ++ /usr/share/lmod/lmod/libexec/lmod sh load mpi/openmpi-arm + eval '__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib/openmpi/lib:1;' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH=/usr/lib/openmpi/lib;' export 'LD_LIBRARY_PATH;' '__LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-arm:1;' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES=mpi/openmpi-arm;' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/man/openmpi-arm:1\;/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=:/usr/share/man/openmpi-arm:/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' 'MPI_BIN=/usr/lib/openmpi/bin;' export 'MPI_BIN;' 'MPI_COMPILER=openmpi-arm;' export 'MPI_COMPILER;' 'MPI_FORTRAN_MOD_DIR=/usr/lib/gfortran/modules/openmpi;' export 'MPI_FORTRAN_MOD_DIR;' 'MPI_HOME=/usr/lib/openmpi;' export 'MPI_HOME;' 'MPI_INCLUDE=/usr/include/openmpi-arm;' export 'MPI_INCLUDE;' 'MPI_LIB=/usr/lib/openmpi/lib;' export 'MPI_LIB;' 'MPI_MAN=/usr/share/man/openmpi-arm;' export 'MPI_MAN;' 'MPI_PYTHON2_SITEARCH=/usr/lib/python2.7/site-packages/openmpi;' export 'MPI_PYTHON2_SITEARCH;' 'MPI_PYTHON3_SITEARCH=/usr/lib/python3.7/site-packages/openmpi;' export 'MPI_PYTHON3_SITEARCH;' 'MPI_PYTHON_SITEARCH=/usr/lib/python2.7/site-packages/openmpi;' export 'MPI_PYTHON_SITEARCH;' 'MPI_SUFFIX=_openmpi;' export 'MPI_SUFFIX;' 'MPI_SYSCONFIG=/etc/openmpi-arm;' export 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/lib/openmpi/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/lib/openmpi/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib/openmpi/lib/pkgconfig:1\;/usr/lib/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=/usr/lib/openmpi/lib/pkgconfig::/usr/lib/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' '__LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-arm:1;' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_=/usr/share/modulefiles/mpi/openmpi-arm;' export '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=aWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib/openmpi/lib:1 ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ LD_LIBRARY_PATH=/usr/lib/openmpi/lib ++ export LD_LIBRARY_PATH ++ __LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-arm:1 ++ export __LMOD_REF_COUNT_LOADEDMODULES ++ LOADEDMODULES=mpi/openmpi-arm ++ export LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH='/usr/share/man/openmpi-arm:1;/usr/share/lmod/lmod/share/man:1' ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=:/usr/share/man/openmpi-arm:/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ MPI_BIN=/usr/lib/openmpi/bin ++ export MPI_BIN ++ MPI_COMPILER=openmpi-arm ++ export MPI_COMPILER ++ MPI_FORTRAN_MOD_DIR=/usr/lib/gfortran/modules/openmpi ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib/openmpi ++ export MPI_HOME ++ MPI_INCLUDE=/usr/include/openmpi-arm ++ export MPI_INCLUDE ++ MPI_LIB=/usr/lib/openmpi/lib ++ export MPI_LIB ++ MPI_MAN=/usr/share/man/openmpi-arm ++ export MPI_MAN ++ MPI_PYTHON2_SITEARCH=/usr/lib/python2.7/site-packages/openmpi ++ export MPI_PYTHON2_SITEARCH ++ MPI_PYTHON3_SITEARCH=/usr/lib/python3.7/site-packages/openmpi ++ export MPI_PYTHON3_SITEARCH ++ MPI_PYTHON_SITEARCH=/usr/lib/python2.7/site-packages/openmpi ++ export MPI_PYTHON_SITEARCH ++ MPI_SUFFIX=_openmpi ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/openmpi-arm ++ export MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/lib/openmpi/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/lib/openmpi/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib/openmpi/lib/pkgconfig:1;/usr/lib/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=/usr/lib/openmpi/lib/pkgconfig::/usr/lib/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ __LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-arm:1 ++ export __LMOD_REF_COUNT__LMFILES_ ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-arm ++ export _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=aWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ== ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm 'INSTALL=/usr/bin/install -p' -C openmpi make: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2019.6 -B/builddir/build/BUILD/gromacs-2019.6/openmpi --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019.6/openmpi/CMakeFiles /builddir/build/BUILD/gromacs-2019.6/openmpi/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' cd /builddir/build/BUILD/gromacs-2019.6/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/openmpi /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_external.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 1%] Built target libgromacs_external /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' cd /builddir/build/BUILD/gromacs-2019.6/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/openmpi /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_generated.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 24%] Built target libgromacs_generated /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' cd /builddir/build/BUILD/gromacs-2019.6/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/openmpi /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 98%] Built target libgromacs /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' cd /builddir/build/BUILD/gromacs-2019.6/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/programs /builddir/build/BUILD/gromacs-2019.6/openmpi /builddir/build/BUILD/gromacs-2019.6/openmpi/src/programs /builddir/build/BUILD/gromacs-2019.6/openmpi/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [100%] Built target mdrun_objlib /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' cd /builddir/build/BUILD/gromacs-2019.6/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/programs /builddir/build/BUILD/gromacs-2019.6/openmpi /builddir/build/BUILD/gromacs-2019.6/openmpi/src/programs /builddir/build/BUILD/gromacs-2019.6/openmpi/src/programs/CMakeFiles/mdrun.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Nothing to be done for 'src/programs/CMakeFiles/mdrun.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [100%] Built target mdrun make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019.6/openmpi/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/share/gromacs/COPYING -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/lib/openmpi/bin/mdrun_openmpi -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/lib/openmpi/bin/gmx-completion-mdrun_openmpi.bash make: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' + test -n openmpi + module unload mpi/openmpi-arm ++ /usr/share/lmod/lmod/libexec/lmod sh unload mpi/openmpi-arm + eval unset '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' unset 'LD_LIBRARY_PATH;' unset '__LMOD_REF_COUNT_LOADEDMODULES;' unset 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' unset 'MPI_BIN;' unset 'MPI_COMPILER;' unset 'MPI_FORTRAN_MOD_DIR;' unset 'MPI_HOME;' unset 'MPI_INCLUDE;' unset 'MPI_LIB;' unset 'MPI_MAN;' unset 'MPI_PYTHON2_SITEARCH;' unset 'MPI_PYTHON3_SITEARCH;' unset 'MPI_PYTHON_SITEARCH;' unset 'MPI_SUFFIX;' unset 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=:/usr/lib/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' unset '__LMOD_REF_COUNT__LMFILES_;' unset '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0=;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ unset __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ unset LD_LIBRARY_PATH ++ unset __LMOD_REF_COUNT_LOADEDMODULES ++ unset LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1 ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ unset MPI_BIN ++ unset MPI_COMPILER ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset MPI_INCLUDE ++ unset MPI_LIB ++ unset MPI_MAN ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_PYTHON_SITEARCH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=:/usr/lib/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset __LMOD_REF_COUNT__LMFILES_ ++ unset _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0= ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + for p in '' _d + for mpi in '' mpich openmpi + test -n '' + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm 'INSTALL=/usr/bin/install -p' -C serial_d make: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2019.6 -B/builddir/build/BUILD/gromacs-2019.6/serial_d --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019.6/serial_d/CMakeFiles /builddir/build/BUILD/gromacs-2019.6/serial_d/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_generated.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 17%] Built target libgromacs_generated /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_external.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 21%] Built target libgromacs_external /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 98%] Built target libgromacs /usr/bin/make -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/share/template /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/share/template /builddir/build/BUILD/gromacs-2019.6/serial_d/share/template/CMakeFiles/template.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' /usr/bin/make -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Nothing to be done for 'share/template/CMakeFiles/template.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 98%] Built target template /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/programs /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 98%] Built target mdrun_objlib /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/programs /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Nothing to be done for 'src/programs/CMakeFiles/view_objlib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [100%] Built target view_objlib /usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/programs /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/CMakeFiles/gmx.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' /usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Nothing to be done for 'src/programs/CMakeFiles/gmx.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [100%] Built target gmx /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Nothing to be done for 'src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [100%] Built target mdrun_test_objlib make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019.6/serial_d/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/share/gromacs/COPYING -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/share/man/man1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/share/man/man1/gmx-chi.1 -- Up-to-date: 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/builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/utility/flags.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/utility/fileptr.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/utility/futil.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/utility/gmxassert.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/utility/init.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/utility/programcontext.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/utility/real.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/utility/smalloc.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/utility/stringutil.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/utility/unique_cptr.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/fileio/confio.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/fileio/enxio.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/fileio/filetypes.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/fileio/gmxfio.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/fileio/matio.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/fileio/mtxio.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/fileio/oenv.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/fileio/pdbio.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/fileio/rgb.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/fileio/tpxio.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/fileio/trrio.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/fileio/trxio.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/fileio/xdr_datatype.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/fileio/xtcio.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/fileio/xvgr.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/compat/make_unique.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/gmxana/gstat.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/analysisdata/abstractdata.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/analysisdata/analysisdata.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/analysisdata/arraydata.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/analysisdata/dataframe.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/analysisdata/datamodule.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/analysisdata/modules/average.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/analysisdata/modules/displacement.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/analysisdata/modules/histogram.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/analysisdata/modules/lifetime.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/analysisdata/modules/plot.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/selection/nbsearch.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/selection/indexutil.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/selection/position.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/selection/selection.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/selection/selectioncollection.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/selection/selectionenums.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/selection/selectionoption.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/selection/selectionoptionbehavior.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/selection/selectionoptionmanager.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/trajectoryanalysis/analysismodule.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/trajectoryanalysis/analysissettings.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/trajectoryanalysis/cmdlinerunner.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/include/gromacs/trajectoryanalysis/topologyinformation.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/bin/gmx_d -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/bin -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/bin/gmx-completion.bash -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/bin/gmx-completion-gmx_d.bash make: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' + test -n '' + for mpi in '' mpich openmpi + test -n mpich + module load mpi/mpich-arm ++ /usr/share/lmod/lmod/libexec/lmod sh load mpi/mpich-arm + eval '__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib/mpich/lib:1;' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH=/usr/lib/mpich/lib;' export 'LD_LIBRARY_PATH;' '__LMOD_REF_COUNT_LOADEDMODULES=mpi/mpich-arm:1;' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES=mpi/mpich-arm;' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/man/mpich-arm:1\;/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=:/usr/share/man/mpich-arm:/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' 'MPI_BIN=/usr/lib/mpich/bin;' export 'MPI_BIN;' 'MPI_COMPILER=mpich-arm;' export 'MPI_COMPILER;' 'MPI_FORTRAN_MOD_DIR=/usr/lib/gfortran/modules/mpich;' export 'MPI_FORTRAN_MOD_DIR;' 'MPI_HOME=/usr/lib/mpich;' export 'MPI_HOME;' 'MPI_INCLUDE=/usr/include/mpich-arm;' export 'MPI_INCLUDE;' 'MPI_LIB=/usr/lib/mpich/lib;' export 'MPI_LIB;' 'MPI_MAN=/usr/share/man/mpich-arm;' export 'MPI_MAN;' 'MPI_PYTHON2_SITEARCH=/usr/lib/python2.7/site-packages/mpich;' export 'MPI_PYTHON2_SITEARCH;' 'MPI_PYTHON3_SITEARCH=/usr/lib/python3.7/site-packages/mpich;' export 'MPI_PYTHON3_SITEARCH;' 'MPI_PYTHON_SITEARCH=/usr/lib/python2.7/site-packages/mpich;' export 'MPI_PYTHON_SITEARCH;' 'MPI_SUFFIX=_mpich;' export 'MPI_SUFFIX;' 'MPI_SYSCONFIG=/etc/mpich-arm;' export 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/lib/mpich/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/lib/mpich/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib/mpich/lib/pkgconfig:1\;/usr/lib/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=/usr/lib/mpich/lib/pkgconfig::/usr/lib/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' '__LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/mpich-arm:1;' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_=/usr/share/modulefiles/mpi/mpich-arm;' export '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=b3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib/mpich/lib:1 ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ LD_LIBRARY_PATH=/usr/lib/mpich/lib ++ export LD_LIBRARY_PATH ++ __LMOD_REF_COUNT_LOADEDMODULES=mpi/mpich-arm:1 ++ export __LMOD_REF_COUNT_LOADEDMODULES ++ LOADEDMODULES=mpi/mpich-arm ++ export LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH='/usr/share/man/mpich-arm:1;/usr/share/lmod/lmod/share/man:1' ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=:/usr/share/man/mpich-arm:/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ MPI_BIN=/usr/lib/mpich/bin ++ export MPI_BIN ++ MPI_COMPILER=mpich-arm ++ export MPI_COMPILER ++ MPI_FORTRAN_MOD_DIR=/usr/lib/gfortran/modules/mpich ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib/mpich ++ export MPI_HOME ++ MPI_INCLUDE=/usr/include/mpich-arm ++ export MPI_INCLUDE ++ MPI_LIB=/usr/lib/mpich/lib ++ export MPI_LIB ++ MPI_MAN=/usr/share/man/mpich-arm ++ export MPI_MAN ++ MPI_PYTHON2_SITEARCH=/usr/lib/python2.7/site-packages/mpich ++ export MPI_PYTHON2_SITEARCH ++ MPI_PYTHON3_SITEARCH=/usr/lib/python3.7/site-packages/mpich ++ export MPI_PYTHON3_SITEARCH ++ MPI_PYTHON_SITEARCH=/usr/lib/python2.7/site-packages/mpich ++ export MPI_PYTHON_SITEARCH ++ MPI_SUFFIX=_mpich ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/mpich-arm ++ export MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/lib/mpich/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/lib/mpich/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib/mpich/lib/pkgconfig:1;/usr/lib/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=/usr/lib/mpich/lib/pkgconfig::/usr/lib/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ __LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/mpich-arm:1 ++ export __LMOD_REF_COUNT__LMFILES_ ++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-arm ++ export _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=b3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ== ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm 'INSTALL=/usr/bin/install -p' -C mpich_d make: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2019.6 -B/builddir/build/BUILD/gromacs-2019.6/mpich_d --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019.6/mpich_d/CMakeFiles /builddir/build/BUILD/gromacs-2019.6/mpich_d/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' cd /builddir/build/BUILD/gromacs-2019.6/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/mpich_d /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_external.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 1%] Built target libgromacs_external /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' cd /builddir/build/BUILD/gromacs-2019.6/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/mpich_d /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_generated.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 24%] Built target libgromacs_generated /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' cd /builddir/build/BUILD/gromacs-2019.6/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/mpich_d /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 98%] Built target libgromacs /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' cd /builddir/build/BUILD/gromacs-2019.6/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/programs /builddir/build/BUILD/gromacs-2019.6/mpich_d /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/programs /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [100%] Built target mdrun_objlib /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' cd /builddir/build/BUILD/gromacs-2019.6/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/programs /builddir/build/BUILD/gromacs-2019.6/mpich_d /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/programs /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/programs/CMakeFiles/mdrun.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Nothing to be done for 'src/programs/CMakeFiles/mdrun.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [100%] Built target mdrun make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019.6/mpich_d/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/share/gromacs/COPYING -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/lib/mpich/bin/mdrun_mpich_d -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/lib/mpich/bin/gmx-completion-mdrun_mpich_d.bash make: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' + test -n mpich + module unload mpi/mpich-arm ++ /usr/share/lmod/lmod/libexec/lmod sh unload mpi/mpich-arm + eval unset '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' unset 'LD_LIBRARY_PATH;' unset '__LMOD_REF_COUNT_LOADEDMODULES;' unset 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' unset 'MPI_BIN;' unset 'MPI_COMPILER;' unset 'MPI_FORTRAN_MOD_DIR;' unset 'MPI_HOME;' unset 'MPI_INCLUDE;' unset 'MPI_LIB;' unset 'MPI_MAN;' unset 'MPI_PYTHON2_SITEARCH;' unset 'MPI_PYTHON3_SITEARCH;' unset 'MPI_PYTHON_SITEARCH;' unset 'MPI_SUFFIX;' unset 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=:/usr/lib/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' unset '__LMOD_REF_COUNT__LMFILES_;' unset '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0=;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ unset __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ unset LD_LIBRARY_PATH ++ unset __LMOD_REF_COUNT_LOADEDMODULES ++ unset LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1 ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ unset MPI_BIN ++ unset MPI_COMPILER ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset MPI_INCLUDE ++ unset MPI_LIB ++ unset MPI_MAN ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_PYTHON_SITEARCH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=:/usr/lib/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset __LMOD_REF_COUNT__LMFILES_ ++ unset _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0= ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + for mpi in '' mpich openmpi + test -n openmpi + module load mpi/openmpi-arm ++ /usr/share/lmod/lmod/libexec/lmod sh load mpi/openmpi-arm + eval '__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib/openmpi/lib:1;' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH=/usr/lib/openmpi/lib;' export 'LD_LIBRARY_PATH;' '__LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-arm:1;' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES=mpi/openmpi-arm;' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/man/openmpi-arm:1\;/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=:/usr/share/man/openmpi-arm:/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' 'MPI_BIN=/usr/lib/openmpi/bin;' export 'MPI_BIN;' 'MPI_COMPILER=openmpi-arm;' export 'MPI_COMPILER;' 'MPI_FORTRAN_MOD_DIR=/usr/lib/gfortran/modules/openmpi;' export 'MPI_FORTRAN_MOD_DIR;' 'MPI_HOME=/usr/lib/openmpi;' export 'MPI_HOME;' 'MPI_INCLUDE=/usr/include/openmpi-arm;' export 'MPI_INCLUDE;' 'MPI_LIB=/usr/lib/openmpi/lib;' export 'MPI_LIB;' 'MPI_MAN=/usr/share/man/openmpi-arm;' export 'MPI_MAN;' 'MPI_PYTHON2_SITEARCH=/usr/lib/python2.7/site-packages/openmpi;' export 'MPI_PYTHON2_SITEARCH;' 'MPI_PYTHON3_SITEARCH=/usr/lib/python3.7/site-packages/openmpi;' export 'MPI_PYTHON3_SITEARCH;' 'MPI_PYTHON_SITEARCH=/usr/lib/python2.7/site-packages/openmpi;' export 'MPI_PYTHON_SITEARCH;' 'MPI_SUFFIX=_openmpi;' export 'MPI_SUFFIX;' 'MPI_SYSCONFIG=/etc/openmpi-arm;' export 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/lib/openmpi/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/lib/openmpi/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib/openmpi/lib/pkgconfig:1\;/usr/lib/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=/usr/lib/openmpi/lib/pkgconfig::/usr/lib/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' '__LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-arm:1;' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_=/usr/share/modulefiles/mpi/openmpi-arm;' export '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=aWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib/openmpi/lib:1 ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ LD_LIBRARY_PATH=/usr/lib/openmpi/lib ++ export LD_LIBRARY_PATH ++ __LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-arm:1 ++ export __LMOD_REF_COUNT_LOADEDMODULES ++ LOADEDMODULES=mpi/openmpi-arm ++ export LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH='/usr/share/man/openmpi-arm:1;/usr/share/lmod/lmod/share/man:1' ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=:/usr/share/man/openmpi-arm:/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ MPI_BIN=/usr/lib/openmpi/bin ++ export MPI_BIN ++ MPI_COMPILER=openmpi-arm ++ export MPI_COMPILER ++ MPI_FORTRAN_MOD_DIR=/usr/lib/gfortran/modules/openmpi ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib/openmpi ++ export MPI_HOME ++ MPI_INCLUDE=/usr/include/openmpi-arm ++ export MPI_INCLUDE ++ MPI_LIB=/usr/lib/openmpi/lib ++ export MPI_LIB ++ MPI_MAN=/usr/share/man/openmpi-arm ++ export MPI_MAN ++ MPI_PYTHON2_SITEARCH=/usr/lib/python2.7/site-packages/openmpi ++ export MPI_PYTHON2_SITEARCH ++ MPI_PYTHON3_SITEARCH=/usr/lib/python3.7/site-packages/openmpi ++ export MPI_PYTHON3_SITEARCH ++ MPI_PYTHON_SITEARCH=/usr/lib/python2.7/site-packages/openmpi ++ export MPI_PYTHON_SITEARCH ++ MPI_SUFFIX=_openmpi ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/openmpi-arm ++ export MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/lib/openmpi/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/lib/openmpi/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib/openmpi/lib/pkgconfig:1;/usr/lib/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=/usr/lib/openmpi/lib/pkgconfig::/usr/lib/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ __LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-arm:1 ++ export __LMOD_REF_COUNT__LMFILES_ ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-arm ++ export _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=aWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ== ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm 'INSTALL=/usr/bin/install -p' -C openmpi_d make: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2019.6 -B/builddir/build/BUILD/gromacs-2019.6/openmpi_d --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019.6/openmpi_d/CMakeFiles /builddir/build/BUILD/gromacs-2019.6/openmpi_d/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/openmpi_d /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_external.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 1%] Built target libgromacs_external /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/openmpi_d /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_generated.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 24%] Built target libgromacs_generated /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/openmpi_d /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 98%] Built target libgromacs /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/programs /builddir/build/BUILD/gromacs-2019.6/openmpi_d /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/programs /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [100%] Built target mdrun_objlib /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/programs /builddir/build/BUILD/gromacs-2019.6/openmpi_d /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/programs /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/programs/CMakeFiles/mdrun.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Nothing to be done for 'src/programs/CMakeFiles/mdrun.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [100%] Built target mdrun make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019.6/openmpi_d/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/share/gromacs/COPYING -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/lib/openmpi/bin/mdrun_openmpi_d -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/lib/openmpi/bin/gmx-completion-mdrun_openmpi_d.bash make: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' + test -n openmpi + module unload mpi/openmpi-arm ++ /usr/share/lmod/lmod/libexec/lmod sh unload mpi/openmpi-arm + eval unset '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' unset 'LD_LIBRARY_PATH;' unset '__LMOD_REF_COUNT_LOADEDMODULES;' unset 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' unset 'MPI_BIN;' unset 'MPI_COMPILER;' unset 'MPI_FORTRAN_MOD_DIR;' unset 'MPI_HOME;' unset 'MPI_INCLUDE;' unset 'MPI_LIB;' unset 'MPI_MAN;' unset 'MPI_PYTHON2_SITEARCH;' unset 'MPI_PYTHON3_SITEARCH;' unset 'MPI_PYTHON_SITEARCH;' unset 'MPI_SUFFIX;' unset 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=:/usr/lib/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' unset '__LMOD_REF_COUNT__LMFILES_;' unset '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0=;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ unset __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ unset LD_LIBRARY_PATH ++ unset __LMOD_REF_COUNT_LOADEDMODULES ++ unset LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1 ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ unset MPI_BIN ++ unset MPI_COMPILER ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset MPI_INCLUDE ++ unset MPI_LIB ++ unset MPI_MAN ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_PYTHON_SITEARCH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=:/usr/lib/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset __LMOD_REF_COUNT__LMFILES_ ++ unset _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0= ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + mkdir -p /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/share/doc/gromacs + install -pm 644 AUTHORS COPYING README /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/share/doc/gromacs + install -cpm 644 serial/docs/manual/gromacs.pdf /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/share/doc/gromacs/manual.pdf + install -cpm 644 /builddir/build/SOURCES/gromacs-README.fedora /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/share/doc/gromacs/README.fedora + pushd /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm ~/build/BUILDROOT/gromacs-2019.6-1.fc31.arm ~/build/BUILD/gromacs-2019.6 + rm .//usr/bin/GMXRC .//usr/bin/GMXRC.bash .//usr/bin/GMXRC.csh .//usr/bin/GMXRC.zsh + for bin in demux.pl xplor2gmx.pl + mv .//usr/bin/demux.pl .//usr/bin/g_demux.pl + for bin in demux.pl xplor2gmx.pl + mv .//usr/bin/xplor2gmx.pl .//usr/bin/g_xplor2gmx.pl + mkdir -p .//usr/share/bash-completion/completions + for bin in gmx{,_d} + cat .//usr/bin/gmx-completion.bash .//usr/bin/gmx-completion-gmx.bash + rm .//usr/bin/gmx-completion-gmx.bash + for bin in gmx{,_d} + cat .//usr/bin/gmx-completion.bash .//usr/bin/gmx-completion-gmx_d.bash + rm .//usr/bin/gmx-completion-gmx_d.bash + rm .//usr/bin/gmx-completion.bash .//usr/lib/mpich/bin/gmx-completion-mdrun_mpich.bash .//usr/lib/mpich/bin/gmx-completion-mdrun_mpich_d.bash .//usr/lib/openmpi/bin/gmx-completion-mdrun_openmpi.bash .//usr/lib/openmpi/bin/gmx-completion-mdrun_openmpi_d.bash + /usr/lib/rpm/find-debuginfo.sh -j5 --strict-build-id -m -i --build-id-seed 2019.6-1.fc31 --unique-debug-suffix -2019.6-1.fc31.arm --unique-debug-src-base gromacs-2019.6-1.fc31.arm --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/gromacs-2019.6 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/lib/mpich/bin/mdrun_mpich explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/lib/libgromacs.so.4.0.0 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/lib/libgromacs_d.so.4.0.0 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/bin/gmx explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/bin/gmx_d extracting debug info from /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/bin/gmx_d extracting debug info from /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/bin/gmx extracting debug info from /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/lib/libgromacs_d.so.4.0.0 extracting debug info from /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/lib/libgromacs.so.4.0.0 extracting debug info from /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/lib/mpich/bin/mdrun_mpich explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/lib/mpich/bin/mdrun_mpich_d extracting debug info from /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/lib/mpich/bin/mdrun_mpich_d explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/lib/openmpi/bin/mdrun_openmpi extracting debug info from /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/lib/openmpi/bin/mdrun_openmpi explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/lib/openmpi/bin/mdrun_openmpi_d extracting debug info from /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/lib/openmpi/bin/mdrun_openmpi_d original debug info size: 552780kB, size after compression: 360984kB /usr/lib/rpm/sepdebugcrcfix: Updated 8 CRC32s, 0 CRC32s did match. cpio: serial/src/gromacs/parser.cpp: Cannot stat: No such file or directory cpio: serial/src/gromacs/parser.h: Cannot stat: No such file or directory cpio: serial/src/gromacs/parser.y: Cannot stat: No such file or directory cpio: serial/src/gromacs/scanner.cpp: Cannot stat: No such file or directory cpio: serial/src/gromacs/scanner.l: Cannot stat: No such file or directory cpio: serial/src/gromacs/scanner_flex.h: Cannot stat: No such file or directory cpio: serial_d/src/gromacs/parser.cpp: Cannot stat: No such file or directory cpio: serial_d/src/gromacs/parser.h: Cannot stat: No such file or directory cpio: serial_d/src/gromacs/parser.y: Cannot stat: No such file or directory cpio: serial_d/src/gromacs/scanner.cpp: Cannot stat: No such file or directory cpio: serial_d/src/gromacs/scanner.l: Cannot stat: No such file or directory cpio: serial_d/src/gromacs/scanner_flex.h: Cannot stat: No such file or directory 44118 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/redhat/brp-python-bytecompile /usr/bin/python 1 0 + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-mangle-shebangs Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.IHYZxt + umask 022 + cd /builddir/build/BUILD + cd gromacs-2019.6 + . /etc/profile.d/modules.sh ++ . /etc/profile.d/00-modulepath.sh +++ '[' -z /etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ']' +++ : ++ '[' -z '' ']' ++ '[' -z /usr/share/modulefiles ']' ++ PS_CMD=/usr/bin/ps ++ '[' '!' -x /usr/bin/ps ']' ++ EXPR_CMD=/usr/bin/expr ++ '[' '!' -x /usr/bin/expr ']' ++ BASENAME_CMD=/usr/bin/basename ++ '[' '!' -x /usr/bin/basename ']' +++ /usr/bin/ps -p 24642 -ocomm= ++ my_shell=sh +++ /usr/bin/expr sh : '-*\(.*\)' ++ my_shell=sh +++ /usr/bin/basename sh ++ my_shell=sh ++ '[' -f /usr/share/lmod/lmod/init/sh ']' ++ . /usr/share/lmod/lmod/init/sh +++ LMOD_ROOT=/usr/share/lmod +++ LMOD_PKG=/usr/share/lmod/lmod +++ LMOD_DIR=/usr/share/lmod/lmod/libexec/ +++ LMOD_CMD=/usr/share/lmod/lmod/libexec/lmod +++ MODULESHOME=/usr/share/lmod/lmod +++ export LMOD_CMD +++ export LMOD_PKG +++ export LMOD_DIR +++ export MODULESHOME +++ export LMOD_DIR ++ unset my_shell PS_CMD EXPR_CMD BASENAME_CMD MODULEPATH_INIT + for p in '' _d + for mpi in '' mpich openmpi + test '' = openmpi + test -n '' + test -n '' + xLD_LIBRARY_PATH=/builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/lib + LD_LIBRARY_PATH=/builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/lib + make -C serial VERBOSE=1 -j5 check make: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2019.6 -B/builddir/build/BUILD/gromacs-2019.6/serial --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 check make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2019.6 -B/builddir/build/BUILD/gromacs-2019.6/serial --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019.6/serial/CMakeFiles 97 make -f CMakeFiles/Makefile2 CMakeFiles/check.dir/all make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/depend make -f src/external/googletest/CMakeFiles/gmock.dir/build.make src/external/googletest/CMakeFiles/gmock.dir/depend make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/external/googletest /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/external/googletest /builddir/build/BUILD/gromacs-2019.6/serial/src/external/googletest/CMakeFiles/gmock.dir/DependInfo.cmake --color= make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/programs /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/programs /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/DependInfo.cmake --color= make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/external/googletest/CMakeFiles/gmock.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/external/googletest/CMakeFiles/gmock.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/external/googletest/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/external/googletest/CMakeFiles/gmock.dir/depend.internal". make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[3]: Nothing to be done for 'src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_external.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 0%] Built target mdrun_objlib [ 0%] Built target mdrun_test_objlib make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend Scanning dependencies of target gmock make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f src/external/googletest/CMakeFiles/gmock.dir/build.make src/external/googletest/CMakeFiles/gmock.dir/build make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake --color= make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake --color= [ 3%] Built target libgromacs_external make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/tests /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/analysisdata/tests /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/onlinehelp/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdrunutility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend.internal". [ 3%] Building CXX object src/external/googletest/CMakeFiles/gmock.dir/googlemock/src/gmock-all.cc.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/external/googletest && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -D_GNU_SOURCE=1 -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmock.dir/googlemock/src/gmock-all.cc.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/src/gmock-all.cc Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/analysisdata/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/depend.internal". Scanning dependencies of target onlinehelp-test-shared make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_generated.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' Scanning dependencies of target mdrunutility-test-shared make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 16%] Built target libgromacs_generated Scanning dependencies of target analysisdata-test-shared [ 16%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/tests/mock_helptopic.cpp [ 16%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrunutility/tests/threadaffinitytest.cpp make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 16%] Building CXX object src/external/googletest/CMakeFiles/gmock.dir/googletest/src/gtest-all.cc.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/external/googletest && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -D_GNU_SOURCE=1 -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmock.dir/googletest/src/gtest-all.cc.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/src/gtest-all.cc [ 16%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/tests/datatest.cpp [ 16%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/tests/mock_datamodule.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 16%] Built target onlinehelp-test-shared make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 16%] Built target mdrunutility-test-shared make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 75%] Built target libgromacs make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 75%] Built target analysisdata-test-shared [ 76%] Linking CXX static library ../../../lib/libgmock.a cd /builddir/build/BUILD/gromacs-2019.6/serial/src/external/googletest && /usr/bin/cmake -P CMakeFiles/gmock.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2019.6/serial/src/external/googletest && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmock.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/libgmock.a CMakeFiles/gmock.dir/googlemock/src/gmock-all.cc.o CMakeFiles/gmock.dir/googletest/src/gtest-all.cc.o /usr/bin/ranlib ../../../lib/libgmock.a make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 76%] Built target gmock make -f src/testutils/CMakeFiles/testutils.dir/build.make src/testutils/CMakeFiles/testutils.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/testutils /builddir/build/BUILD/gromacs-2019.6/serial 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Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/testutils/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/testutils/CMakeFiles/testutils.dir/depend.internal". Scanning dependencies of target testutils make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f src/testutils/CMakeFiles/testutils.dir/build.make src/testutils/CMakeFiles/testutils.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 76%] Building CXX object src/testutils/CMakeFiles/testutils.dir/loggertest.cpp.o [ 76%] Building CXX object src/testutils/CMakeFiles/testutils.dir/conftest.cpp.o [ 77%] Building CXX object src/testutils/CMakeFiles/testutils.dir/cmdlinetest.cpp.o [ 77%] Building CXX object src/testutils/CMakeFiles/testutils.dir/filematchers.cpp.o [ 77%] Building CXX object src/testutils/CMakeFiles/testutils.dir/interactivetest.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils.dir/testoptions.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/testoptions.cpp [ 78%] Building CXX object src/testutils/CMakeFiles/testutils.dir/textblockmatchers.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils.dir/textblockmatchers.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/textblockmatchers.cpp [ 78%] Building CXX object src/testutils/CMakeFiles/testutils.dir/xvgtest.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/testutils/../external/tinyxml2 -isystem 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../../lib/libtestutils.a cd /builddir/build/BUILD/gromacs-2019.6/serial/src/testutils && /usr/bin/cmake -P CMakeFiles/testutils.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2019.6/serial/src/testutils && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils.dir/link.txt --verbose=1 /usr/bin/ar qc ../../lib/libtestutils.a CMakeFiles/testutils.dir/cmdlinetest.cpp.o CMakeFiles/testutils.dir/conftest.cpp.o CMakeFiles/testutils.dir/filematchers.cpp.o CMakeFiles/testutils.dir/interactivetest.cpp.o CMakeFiles/testutils.dir/loggertest.cpp.o CMakeFiles/testutils.dir/mpi-printer.cpp.o CMakeFiles/testutils.dir/mpitest.cpp.o CMakeFiles/testutils.dir/refdata.cpp.o CMakeFiles/testutils.dir/refdata-xml.cpp.o CMakeFiles/testutils.dir/stdiohelper.cpp.o CMakeFiles/testutils.dir/stringtest.cpp.o CMakeFiles/testutils.dir/testasserts.cpp.o CMakeFiles/testutils.dir/testfilemanager.cpp.o CMakeFiles/testutils.dir/testfileredirector.cpp.o CMakeFiles/testutils.dir/testinit.cpp.o CMakeFiles/testutils.dir/testmatchers.cpp.o CMakeFiles/testutils.dir/testoptions.cpp.o CMakeFiles/testutils.dir/textblockmatchers.cpp.o CMakeFiles/testutils.dir/xvgtest.cpp.o CMakeFiles/testutils.dir/__/external/tinyxml2/tinyxml2.cpp.o /usr/bin/ranlib ../../lib/libtestutils.a make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 78%] Built target testutils make -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/depend make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/depend make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/testutils/tests /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/testutils/tests /builddir/build/BUILD/gromacs-2019.6/serial/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/DependInfo.cmake --color= make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/testutils/tests /builddir/build/BUILD/gromacs-2019.6/serial 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Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/testutils/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdlib/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/applied-forces/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/depend.internal". Scanning dependencies of target testutils-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' Scanning dependencies of target testutils-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' Scanning dependencies of target applied-forces-test make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/build make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' Scanning dependencies of target mdlib-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 78%] Building CXX object src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build cd /builddir/build/BUILD/gromacs-2019.6/serial/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/tests/mpitest.cpp Scanning dependencies of target mdrun-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 78%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/interactivetest.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/interactivetest.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/tests/interactivetest.cpp make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 78%] Building CXX object src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/electricfield.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/applied-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/applied-forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/applied-forces-test.dir/electricfield.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/applied-forces/tests/electricfield.cpp [ 78%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/tests/calc_verletbuf.cpp [ 78%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests/domain_decomposition.cpp [ 78%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/minimize.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/minimize.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests/minimize.cpp [ 78%] Building CXX object src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 78%] Linking CXX executable ../../../bin/testutils-mpi-test cd /builddir/build/BUILD/gromacs-2019.6/serial/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-mpi-test ../../../lib/libtestutils.a ../../../lib/libgromacs.so.4.0.0 ../../../lib/libgmock.a -lpthread -fopenmp -lm [ 78%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/mdebin.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/mdebin.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/tests/mdebin.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 78%] Built target testutils-mpi-test make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/tests 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Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/listed-forces/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/depend.internal". Scanning dependencies of target listed-forces-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 78%] Building CXX object src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/bonded.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/listed-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/listed-forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/listed-forces-test.dir/bonded.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/tests/bonded.cpp [ 78%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/refdata_tests.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/tests/refdata_tests.cpp [ 78%] Building CXX object src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/applied-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/applied-forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 78%] Linking CXX executable ../../../../bin/applied-forces-test cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/applied-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied-forces-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/applied-forces-test.dir/electricfield.cpp.o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/applied-forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm [ 78%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settle.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/tests/settle.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 78%] Built target applied-forces-test make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/tests /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/commandline/tests /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/commandline/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend.internal". Scanning dependencies of target commandline-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 78%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/tests/cmdlinehelpmodule.cpp [ 78%] Building CXX object src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/listed-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/listed-forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 78%] Linking CXX executable ../../../../bin/listed-forces-test cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/listed-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/listed-forces-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/listed-forces-test.dir/bonded.cpp.o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/listed-forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 78%] Built target listed-forces-test make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/tests /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/domdec/tests /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/domdec/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend.internal". Scanning dependencies of target domdec-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 78%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/hashedmap.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/domdec/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/hashedmap.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/tests/hashedmap.cpp [ 78%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests/mimic.cpp [ 78%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/domdec/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/tests/localatomsetmanager.cpp [ 78%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp [ 78%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/multisim.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/multisim.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests/multisim.cpp [ 78%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/tests/testasserts_tests.cpp [ 78%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/shake.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/tests/shake.cpp [ 78%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/domdec/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 78%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp [ 78%] Linking CXX executable ../../../../bin/domdec-test cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/domdec-test.dir/hashedmap.cpp.o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/domdec-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm [ 78%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/multisimtest.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/multisimtest.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests/multisimtest.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 78%] Built target domdec-test make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 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Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/ewald/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend.internal". Scanning dependencies of target ewald-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 78%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem 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/builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 79%] Linking CXX executable ../../../bin/testutils-test cd /builddir/build/BUILD/gromacs-2019.6/serial/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test ../../../lib/libtestutils.a ../../../lib/libgromacs.so.4.0.0 ../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 79%] Built target testutils-test [ 79%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmegathertest.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include 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/builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests/replicaexchange.cpp [ 79%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/updategroups.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches 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/builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/tests/pmesolvetest.cpp [ 79%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/tests/cmdlinemodulemanagertest.cpp [ 79%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions 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-mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o CMakeFiles/mdrun-mpi-test.dir/minimize.cpp.o CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o CMakeFiles/mdrun-mpi-test.dir/multisim.cpp.o CMakeFiles/mdrun-mpi-test.dir/multisimtest.cpp.o CMakeFiles/mdrun-mpi-test.dir/pmetest.cpp.o CMakeFiles/mdrun-mpi-test.dir/replicaexchange.cpp.o CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrun_test_objlib.dir/energyreader.cpp.o CMakeFiles/mdrun_test_objlib.dir/energycomparison.cpp.o CMakeFiles/mdrun_test_objlib.dir/moduletest.cpp.o CMakeFiles/mdrun_test_objlib.dir/simulationdatabase.cpp.o CMakeFiles/mdrun_test_objlib.dir/terminationhelper.cpp.o CMakeFiles/mdrun_test_objlib.dir/trajectorycomparison.cpp.o CMakeFiles/mdrun_test_objlib.dir/trajectoryreader.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -o ../../../../bin/mdrun-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm [ 79%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/tests/updategroupscog.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 79%] Built target mdrun-mpi-test make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fft/tests /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/fft/tests /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/fft/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend.internal". Scanning dependencies of target fft-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 79%] Building CXX object src/gromacs/fft/tests/CMakeFiles/fft-test.dir/fft.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/fft/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fft-test.dir/fft.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fft/tests/fft.cpp [ 80%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 80%] Building CXX object src/gromacs/fft/tests/CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/fft/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 80%] Linking CXX executable ../../../../bin/mdlib-test cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 [ 80%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/tests/pmesplinespreadtest.cpp /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/mdebin.cpp.o CMakeFiles/mdlib-test.dir/settle.cpp.o CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/updategroups.cpp.o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdlib-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm [ 80%] Linking CXX executable ../../../../bin/fft-test cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm [ 80%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/tests/cmdlineparser.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 80%] Built target fft-test make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/tests /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/gpu_utils/tests /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/gpu_utils/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend.internal". Scanning dependencies of target gpu_utils-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 80%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/gputest.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/gputest.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/tests/gputest.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 80%] Built target mdlib-test make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/tests /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/hardware/tests /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/hardware/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend.internal". Scanning dependencies of target hardware-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 80%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/cpuinfo.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/hardware/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/hardware-test.dir/cpuinfo.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/tests/cpuinfo.cpp [ 80%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/tests/hostallocator.cpp [ 80%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/hardware/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/tests/hardwaretopology.cpp [ 80%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/hardware/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 80%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/tests/pmetestcommon.cpp [ 81%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp [ 81%] Linking CXX executable ../../../../bin/hardware-test cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/hardware-test.dir/cpuinfo.cpp.o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 81%] Built target hardware-test make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/math/tests /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/math/tests/CMakeFiles/math-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/math/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/math/tests/CMakeFiles/math-test.dir/depend.internal". Scanning dependencies of target math-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 81%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/tests/testhardwarecontexts.cpp [ 81%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/arrayrefwithpadding.cpp [ 81%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/pargs.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/pargs.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/tests/pargs.cpp [ 81%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 82%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdrunutility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend.internal". Scanning dependencies of target mdrunutility-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 82%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrunutility/tests/threadaffinity-mpi.cpp [ 82%] Linking CXX executable ../../../../bin/ewald-test cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/ewald-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/arrayref.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/arrayrefwithpadding.h:49, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/arrayrefwithpadding.cpp:43: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = gmx::Allocator]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/arrayref.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/arrayrefwithpadding.h:49, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/arrayrefwithpadding.cpp:43: /usr/include/c++/9/bits/stl_vector.h: In member function 'testing::Test* testing::internal::TestFactoryImpl::CreateTest() [with TestClass = gmx::{anonymous}::ArrayRefWithPaddingTest_ConstructFromPointersWorks_Test >]': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h: In member function 'testing::Test* testing::internal::TestFactoryImpl::CreateTest() [with TestClass = gmx::{anonymous}::ArrayRefWithPaddingTest_AssignFromPaddedVectorWorks_Test >]': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 82%] Built target ewald-test make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdrunutility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend.internal". Scanning dependencies of target mdrunutility-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 82%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrunutility/tests/threadaffinity.cpp [ 82%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/dofit.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/dofit.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/dofit.cpp [ 82%] Linking CXX executable ../../../../bin/commandline-test cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o CMakeFiles/commandline-test.dir/pargs.cpp.o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/commandline-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 82%] Built target commandline-test [ 82%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 82%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 83%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/functions.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/functions.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/functions.cpp [ 83%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/invertmatrix.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/invertmatrix.cpp [ 83%] Linking CXX executable ../../../../bin/mdrunutility-test cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm [ 84%] Linking CXX executable ../../../../bin/mdrunutility-mpi-test cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 84%] Built target mdrunutility-test make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/onlinehelp/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend.internal". Scanning dependencies of target onlinehelp-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 84%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/tests/helpformat.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 84%] Built target mdrunutility-mpi-test make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/tests /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/options/tests /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/options/tests/CMakeFiles/options-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/options/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/options/tests/CMakeFiles/options-test.dir/depend.internal". Scanning dependencies of target options-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 84%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/tests/abstractoptionstorage.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include/gtest/gtest.h:56, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/functions.cpp:49: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ [ 84%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/paddedvector.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/paddedvector.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/paddedvector.cpp [ 84%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/tests/helpmanager.cpp [ 84%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/vectypes.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/vectypes.cpp [ 84%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/tests/devicetransfers.cpp [ 84%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 84%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/tests/helpwritercontext.cpp [ 84%] Linking CXX executable ../../../../bin/gpu_utils-test cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/gpu_utils-test.dir/gputest.cpp.o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gpu_utils-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 84%] Built target gpu_utils-test make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tests /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/random/tests /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/random/tests/CMakeFiles/random-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/random/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/random/tests/CMakeFiles/random-test.dir/depend.internal". Scanning dependencies of target random-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 84%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/exponentialdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/exponentialdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tests/exponentialdistribution.cpp [ 85%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 85%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 85%] Linking CXX executable ../../../../bin/onlinehelp-test cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/onlinehelp-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm [ 85%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/gammadistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tests/gammadistribution.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 85%] Built target onlinehelp-test make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/restraint/tests /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/restraint/tests /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/restraint/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend.internal". Scanning dependencies of target restraintpotential-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 85%] Building CXX object src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/manager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/restraint/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/restraint/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/restraintpotential-test.dir/manager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/restraint/tests/manager.cpp In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/paddedvector.cpp:59: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/testarrayrefs.h: In function 'void gmx::test::fillInputContents(gmx::ArrayRef >, int) [with T = double]': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/testarrayrefs.h:70:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 70 | void fillInputContents(ArrayRef < BasicVector < T>> inputRef, | ^~~~~~~~~~~~~~~~~ [ 85%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoption.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/tests/filenameoption.cpp [ 85%] Building CXX object src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o [ 85%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/normaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tests/normaldistribution.cpp cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/restraint/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/restraint/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 85%] Linking CXX executable ../../../../bin/restraintpotential-test cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/restraintpotential-test.dir/manager.cpp.o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/restraintpotential-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 85%] Built target restraintpotential-test make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/tables/tests /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/tables/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend.internal". Scanning dependencies of target table-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 85%] Building CXX object src/gromacs/tables/tests/CMakeFiles/table-test.dir/splinetable.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/tables/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/table-test.dir/splinetable.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/paddedvector.cpp:47: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ [ 85%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/seed.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/seed.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tests/seed.cpp In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/paddedvector.cpp:47: /usr/include/c++/9/bits/stl_vector.h: In function 'void gmx::test::fillInput(PaddedVectorOfT*, int) [with PaddedVectorOfT = gmx::PaddedVector >]': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/paddedvector.cpp:47: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = gmx::BasicVector; _Alloc = gmx::Allocator, gmx::AlignedAllocationPolicy>]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/paddedvector.cpp:47: /usr/include/c++/9/bits/stl_vector.h: In function 'void gmx::test::fillInput(PaddedVectorOfT*, int) [with PaddedVectorOfT = gmx::PaddedVector, gmx::Allocator, gmx::AlignedAllocationPolicy> >]': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ [ 85%] Building CXX object src/gromacs/tables/tests/CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/tables/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 85%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tests/tabulatednormaldistribution.cpp [ 85%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/tests/filenameoptionmanager.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/paddedvector.cpp:47: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = gmx::Allocator]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/paddedvector.cpp:47: /usr/include/c++/9/bits/stl_vector.h: In function 'void gmx::test::fillInput(PaddedVectorOfT*, int) [with PaddedVectorOfT = gmx::PaddedVector >]': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/paddedvector.cpp:47: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = gmx::BasicVector; _Alloc = std::allocator >]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ [ 85%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/option.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/option.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/tests/option.cpp In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/paddedvector.cpp:47: /usr/include/c++/9/bits/stl_vector.h: In function 'void gmx::test::fillInput(PaddedVectorOfT*, int) [with PaddedVectorOfT = gmx::PaddedVector, std::allocator > >]': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include/gtest/gtest.h:56, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tests/tabulatednormaldistribution.cpp:45: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/paddedvector.cpp:59: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/testarrayrefs.h: In function 'void gmx::test::compareViews(gmx::ArrayRef, gmx::ArrayRef) [with T = double]': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/testarrayrefs.h:97:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 97 | void compareViews(ArrayRef input, | ^~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/testarrayrefs.h:97:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 [ 85%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/optionsassigner.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/tests/optionsassigner.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/testarrayrefs.h: In function 'void gmx::test::compareViews(gmx::ArrayRef >, gmx::ArrayRef >) [with T = double]': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/testarrayrefs.h:109:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 109 | void compareViews(ArrayRef < BasicVector < T>> input, | ^~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/testarrayrefs.h:109:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 /usr/include/c++/9/bits/vector.tcc: In member function 'virtual void gmx::{anonymous}::TabulatedNormalDistributionTest_OutputDouble14_Test::TestBody()': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp: In member function 'void gmx::test::{anonymous}::SplineTableTest_NumericalInputPmeCorr_Test::TestBody() [with gtest_TypeParam_ = gmx::QuadraticSplineTable]': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:517:16: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 517 | TypeParam pmeCorrTable( {{"NumericalPMECorr", functionValues, derivativeValues, inputSpacing}}, | ^~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp: In member function 'void gmx::test::{anonymous}::SplineTableTest_NumericalInputPmeCorr_Test::TestBody() [with gtest_TypeParam_ = gmx::CubicSplineTable]': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:517:16: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 517 | TypeParam pmeCorrTable( {{"NumericalPMECorr", functionValues, derivativeValues, inputSpacing}}, | ^~~~~~~~~~~~ [ 85%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/threefry.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/threefry.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tests/threefry.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include/gtest/gtest.h:56, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:50: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include/gtest/gtest.h:58, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:50: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp: In member function 'void gmx::test::{anonymous}::SplineTableTest_HandlesIncorrectNumericalInput_Test::TestBody() [with gtest_TypeParam_ = gmx::QuadraticSplineTable]': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:461:22: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 461 | EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.001}}, | ^~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/testutils/testasserts.h:176:5: note: in expansion of macro 'GMX_TEST_THROW_' 176 | GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:461:5: note: in expansion of macro 'EXPECT_THROW_GMX' 461 | EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.001}}, | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:467:22: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 467 | EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.1}}, | ^~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/testutils/testasserts.h:176:5: note: in expansion of macro 'GMX_TEST_THROW_' 176 | GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:467:5: note: in expansion of macro 'EXPECT_THROW_GMX' 467 | EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.1}}, | ^~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include/gtest/gtest.h:56, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:50: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include/gtest/gtest.h:58, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:50: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:489:22: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 489 | EXPECT_THROW_GMX(TypeParam( {{"NumericalBadLJ12", functionValues, badDerivativeValues, spacing}}, | ^~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/testutils/testasserts.h:176:5: note: in expansion of macro 'GMX_TEST_THROW_' 176 | GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:489:5: note: in expansion of macro 'EXPECT_THROW_GMX' 489 | EXPECT_THROW_GMX(TypeParam( {{"NumericalBadLJ12", functionValues, badDerivativeValues, spacing}}, | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:494:22: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 494 | EXPECT_THROW_GMX(TypeParam( {{"NumericalLJ12", functionValues, derivativeValues, spacing}}, | ^~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/testutils/testasserts.h:176:5: note: in expansion of macro 'GMX_TEST_THROW_' 176 | GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:494:5: note: in expansion of macro 'EXPECT_THROW_GMX' 494 | EXPECT_THROW_GMX(TypeParam( {{"NumericalLJ12", functionValues, derivativeValues, spacing}}, | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp: In member function 'void gmx::test::{anonymous}::SplineTableTest_HandlesIncorrectNumericalInput_Test::TestBody() [with gtest_TypeParam_ = gmx::CubicSplineTable]': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:461:22: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 461 | EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.001}}, | ^~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/testutils/testasserts.h:176:5: note: in expansion of macro 'GMX_TEST_THROW_' 176 | GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:461:5: note: in expansion of macro 'EXPECT_THROW_GMX' 461 | EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.001}}, | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:467:22: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 467 | EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.1}}, | ^~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/testutils/testasserts.h:176:5: note: in expansion of macro 'GMX_TEST_THROW_' 176 | GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:467:5: note: in expansion of macro 'EXPECT_THROW_GMX' 467 | EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.1}}, | ^~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include/gtest/gtest.h:56, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:50: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include/gtest/gtest.h:58, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:50: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:489:22: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 489 | EXPECT_THROW_GMX(TypeParam( {{"NumericalBadLJ12", functionValues, badDerivativeValues, spacing}}, | ^~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/testutils/testasserts.h:176:5: note: in expansion of macro 'GMX_TEST_THROW_' 176 | GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:489:5: note: in expansion of macro 'EXPECT_THROW_GMX' 489 | EXPECT_THROW_GMX(TypeParam( {{"NumericalBadLJ12", functionValues, badDerivativeValues, spacing}}, | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:494:22: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 494 | EXPECT_THROW_GMX(TypeParam( {{"NumericalLJ12", functionValues, derivativeValues, spacing}}, | ^~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/testutils/testasserts.h:176:5: note: in expansion of macro 'GMX_TEST_THROW_' 176 | GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:494:5: note: in expansion of macro 'EXPECT_THROW_GMX' 494 | EXPECT_THROW_GMX(TypeParam( {{"NumericalLJ12", functionValues, derivativeValues, spacing}}, | ^~~~~~~~~~~~~~~~ [ 85%] Linking CXX executable ../../../../bin/math-test cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o CMakeFiles/math-test.dir/dofit.cpp.o CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/paddedvector.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 85%] Built target math-test make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/tests /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/taskassignment/tests /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/taskassignment/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend.internal". Scanning dependencies of target taskassignment-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 85%] Building CXX object src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/tests/usergpuids.cpp [ 85%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/repeatingsection.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/tests/repeatingsection.cpp In file included from /usr/include/c++/9/vector:67, from /usr/include/c++/9/bits/random.h:34, from /usr/include/c++/9/random:49, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/seed.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/threefry.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tests/threefry.cpp:43: /usr/include/c++/9/bits/stl_vector.h: In constructor 'std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/include/c++/9/bits/stl_vector.h:622:7: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 622 | vector(initializer_list __l, | ^~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tests/threefry.cpp: In function 'void __static_initialization_and_destruction_0(int, int)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tests/threefry.cpp:119:40: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 119 | }}; | ^ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tests/threefry.cpp:131:39: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 131 | }}; | ^ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tests/threefry.cpp:142:38: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 142 | }}; | ^ [ 85%] Linking CXX executable ../../../../bin/table-test cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/table-test.dir/splinetable.cpp.o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/table-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm [ 86%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/uniformintdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tests/uniformintdistribution.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 86%] Built target table-test make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/utility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend.internal". Scanning dependencies of target utility-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 86%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator-mpi.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator-mpi.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests/physicalnodecommunicator-mpi.cpp [ 86%] Building CXX object src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 86%] Linking CXX executable ../../../../bin/taskassignment-test cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/taskassignment-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm [ 86%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 86%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/timeunitmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/tests/timeunitmanager.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 86%] Built target taskassignment-test make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/utility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend.internal". Scanning dependencies of target utility-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 87%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/alignedallocator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests/alignedallocator.cpp [ 87%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/treesupport.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/tests/treesupport.cpp [ 87%] Linking CXX executable ../../../../bin/utility-mpi-test cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator-mpi.cpp.o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 87%] Built target utility-mpi-test make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/tests /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/fileio/tests /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/fileio/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend.internal". Scanning dependencies of target fileio-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 87%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/confio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/confio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/tests/confio.cpp [ 87%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tests/uniformrealdistribution.cpp [ 87%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/filemd5.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/filemd5.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/tests/filemd5.cpp [ 87%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/readinp.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/tests/readinp.cpp [ 87%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 87%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/tngio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/tngio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/tests/tngio.cpp [ 87%] Linking CXX executable ../../../../bin/random-test cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/random-test.dir/exponentialdistribution.cpp.o CMakeFiles/random-test.dir/gammadistribution.cpp.o CMakeFiles/random-test.dir/normaldistribution.cpp.o CMakeFiles/random-test.dir/seed.cpp.o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o CMakeFiles/random-test.dir/threefry.cpp.o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/random-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm [ 87%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 87%] Built target random-test make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/tests /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/pulling/tests /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/pulling/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend.internal". Scanning dependencies of target pull-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 87%] Building CXX object src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/pull.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/pulling/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/pull-test.dir/pull.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/tests/pull.cpp [ 87%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 87%] Building CXX object src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/pulling/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 87%] Linking CXX executable ../../../../bin/fileio-test cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/fileio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileio-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/fileio-test.dir/confio.cpp.o CMakeFiles/fileio-test.dir/filemd5.cpp.o CMakeFiles/fileio-test.dir/readinp.cpp.o CMakeFiles/fileio-test.dir/tngio.cpp.o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fileio-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm [ 88%] Linking CXX executable ../../../../bin/options-test cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/options/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/options-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o CMakeFiles/options-test.dir/filenameoption.cpp.o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o CMakeFiles/options-test.dir/option.cpp.o CMakeFiles/options-test.dir/optionsassigner.cpp.o CMakeFiles/options-test.dir/repeatingsection.cpp.o CMakeFiles/options-test.dir/timeunitmanager.cpp.o CMakeFiles/options-test.dir/treesupport.cpp.o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/options-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 88%] Built target fileio-test make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/tests /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/awh/tests /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/awh/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend.internal". Scanning dependencies of target awh-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 89%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/bias.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/bias.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/tests/bias.cpp [ 89%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/biasstate.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/tests/biasstate.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 89%] Built target options-test make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/tests /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/simd/tests /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/simd/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend.internal". [ 89%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/arrayref.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests/arrayref.cpp Scanning dependencies of target simd-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 89%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/tests/bootstrap_loadstore.cpp [ 89%] Linking CXX executable ../../../../bin/pull-test cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/pull-test.dir/pull.cpp.o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pull-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 89%] Built target pull-test make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/compat/tests /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/compat/tests /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/compat/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend.internal". Scanning dependencies of target compat-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 89%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/make_unique.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/make_unique.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/compat/tests/make_unique.cpp [ 89%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/base.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/base.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/tests/base.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.h:57, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/tests/biasstate.cpp:37: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double, double, double&}; _Tp = gmx::DimParams; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/tests/bias.cpp:37: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double&, double&, double&}; _Tp = gmx::DimParams; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double, double, double&}; _Tp = gmx::DimParams; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In function 'gmx::test::AwhTestParameters gmx::test::getAwhTestParameters(int, int)': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/tests/bias.cpp:37: /usr/include/c++/9/bits/stl_vector.h: In member function 'virtual void gmx::test::BiasTest_ForcesBiasPmf_Test::TestBody()': /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ [ 89%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/pointers.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/pointers.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/compat/tests/pointers.cpp [ 89%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/tests/simd.cpp [ 89%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/grid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/grid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/tests/grid.cpp [ 89%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/tests/simd_floatingpoint.cpp [ 89%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/dimparams.h:52, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/grid.h:60, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/tests/grid.cpp:37: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const float&, double, const float&}; _Tp = gmx::DimParams; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const float&, double, const float&}; _Tp = gmx::DimParams; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ [ 89%] Linking CXX executable ../../../../bin/compat-test cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/compat/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/compat-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/compat-test.dir/make_unique.cpp.o CMakeFiles/compat-test.dir/pointers.cpp.o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/compat-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm [ 89%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/tests/simd_floatingpoint_util.cpp [ 89%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 89%] Built target compat-test make -f src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build.make src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/tests /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/gmxana/tests /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/gmxana/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/depend.internal". Scanning dependencies of target gmxana-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build.make src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 89%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/entropy.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/gmxana/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxana-test.dir/entropy.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/tests/entropy.cpp [ 90%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/tests/simd_vector_operations.cpp [ 90%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/gmxana/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/tests/gmx_traj.cpp [ 90%] Linking CXX executable ../../../../bin/awh-test cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/awh-test.dir/bias.cpp.o CMakeFiles/awh-test.dir/biasstate.cpp.o CMakeFiles/awh-test.dir/grid.cpp.o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/awh-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 90%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_trjconv.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/gmxana/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxana-test.dir/gmx_trjconv.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/tests/gmx_trjconv.cpp [ 90%] Built target awh-test make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/gmxpreprocess/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx-test.dir/depend.internal". Scanning dependencies of target pdb2gmx-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 90%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx-test.dir/pdb2gmx.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/pdb2gmx-test.dir/pdb2gmx.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/tests/pdb2gmx.cpp [ 90%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_math.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_math.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/tests/simd_math.cpp [ 90%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_memory.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/tests/simd_memory.cpp [ 90%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/pdb2gmx-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 90%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_integer.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_integer.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/tests/simd_integer.cpp [ 90%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/tests/simd4.cpp [ 90%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/tests/simd4_floatingpoint.cpp [ 90%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/tests/simd4_vector_operations.cpp [ 90%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_msd.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/gmxana/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxana-test.dir/gmx_msd.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/tests/gmx_msd.cpp [ 90%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_math.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4_math.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/tests/simd4_math.cpp [ 90%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/scalar.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/tests/scalar.cpp [ 90%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/gmxana/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 90%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_util.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/scalar_util.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/tests/scalar_util.cpp [ 90%] Linking CXX executable ../../../../bin/gmxana-test cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/gmxana/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxana-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/gmxana-test.dir/entropy.cpp.o CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o CMakeFiles/gmxana-test.dir/gmx_trjconv.cpp.o CMakeFiles/gmxana-test.dir/gmx_msd.cpp.o CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gmxana-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm [ 90%] Linking CXX executable ../../../../bin/pdb2gmx-test cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/pdb2gmx-test.dir/pdb2gmx.cpp.o CMakeFiles/pdb2gmx-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pdb2gmx-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 90%] Built target gmxana-test make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/gmxpreprocess/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/depend.internal". Scanning dependencies of target gmxpreprocess-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 90%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/tests/genconf.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 90%] Built target pdb2gmx-test make -f src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build.make src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/correlationfunctions/tests /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/correlationfunctions/tests /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/correlationfunctions/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/depend.internal". Scanning dependencies of target correlations-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build.make src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 90%] Building CXX object src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/autocorr.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/correlations-test.dir/autocorr.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/correlationfunctions/tests/autocorr.cpp [ 90%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/insert-molecules.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxpreprocess-test.dir/insert-molecules.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/tests/insert-molecules.cpp [ 90%] Building CXX object src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/correlationfunctions/tests/manyautocorrelation.cpp [ 90%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_math.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/scalar_math.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/tests/scalar_math.cpp [ 90%] Building CXX object src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/correlationdataset.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/correlations-test.dir/correlationdataset.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/correlationfunctions/tests/correlationdataset.cpp [ 90%] Building CXX object src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/expfit.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/correlations-test.dir/expfit.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/correlationfunctions/tests/expfit.cpp [ 91%] Building CXX object src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 92%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/tests/readir.cpp [ 92%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/tests/solvate.cpp [ 92%] Linking CXX executable ../../../../bin/correlations-test cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/correlationfunctions/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/correlations-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/correlations-test.dir/autocorr.cpp.o CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o CMakeFiles/correlations-test.dir/correlationdataset.cpp.o CMakeFiles/correlations-test.dir/expfit.cpp.o CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/correlations-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 92%] Built target correlations-test make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/tests /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/analysisdata/tests /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/analysisdata/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/depend.internal". Scanning dependencies of target analysisdata-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 92%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/tests/analysisdata.cpp [ 92%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H 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/builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 92%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/arraydata.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/analysisdata-test.dir/arraydata.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/tests/arraydata.cpp [ 92%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 92%] Linking CXX executable ../../../../bin/gmxpreprocess-test cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxpreprocess-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o CMakeFiles/gmxpreprocess-test.dir/insert-molecules.cpp.o CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gmxpreprocess-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 92%] Built target gmxpreprocess-test [ 93%] Linking CXX executable ../../../../bin/simd-test cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/simd/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/simd-test.dir/link.txt --verbose=1 make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/tests /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/selection/tests /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/selection/tests/CMakeFiles/selection-test.dir/DependInfo.cmake --color= /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o CMakeFiles/simd-test.dir/base.cpp.o CMakeFiles/simd-test.dir/simd.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd_math.cpp.o CMakeFiles/simd-test.dir/simd_memory.cpp.o CMakeFiles/simd-test.dir/simd_integer.cpp.o CMakeFiles/simd-test.dir/simd4.cpp.o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd4_math.cpp.o CMakeFiles/simd-test.dir/scalar.cpp.o CMakeFiles/simd-test.dir/scalar_util.cpp.o CMakeFiles/simd-test.dir/scalar_math.cpp.o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/simd-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/selection/tests/CMakeFiles/selection-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/selection/tests/CMakeFiles/selection-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/selection/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/selection/tests/CMakeFiles/selection-test.dir/depend.internal". Scanning dependencies of target selection-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 94%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/indexutil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/selection-test.dir/indexutil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/tests/indexutil.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 94%] Built target simd-test make -f src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build.make src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/tests /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/trajectoryanalysis/tests /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/trajectoryanalysis/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/depend.internal". Scanning dependencies of target trajectoryanalysis-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build.make src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 94%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/tests/moduletest.cpp [ 94%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/average.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/analysisdata-test.dir/average.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/tests/average.cpp [ 94%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/tests/clustsize.cpp [ 94%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/nbsearch.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/selection-test.dir/nbsearch.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/tests/nbsearch.cpp [ 94%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/tests/cmdlinerunner.cpp [ 94%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/histogram.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/analysisdata-test.dir/histogram.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/tests/histogram.cpp [ 94%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/lifetime.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/analysisdata-test.dir/lifetime.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/tests/lifetime.cpp [ 94%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/poscalc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/selection-test.dir/poscalc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/tests/poscalc.cpp [ 94%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 94%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/selectioncollection.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/selection-test.dir/selectioncollection.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/tests/selectioncollection.cpp [ 94%] Linking CXX executable ../../../../bin/analysisdata-test cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/analysisdata/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/analysisdata-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o CMakeFiles/analysisdata-test.dir/arraydata.cpp.o CMakeFiles/analysisdata-test.dir/average.cpp.o CMakeFiles/analysisdata-test.dir/histogram.cpp.o CMakeFiles/analysisdata-test.dir/lifetime.cpp.o CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -o ../../../../bin/analysisdata-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm [ 94%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/selectionoption.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/selection-test.dir/selectionoption.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/tests/selectionoption.cpp [ 94%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/tests/angle.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 94%] Built target analysisdata-test make -f src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build.make src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/energyanalysis/tests /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/energyanalysis/tests /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/energyanalysis/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/depend.internal". Scanning dependencies of target energyanalysis-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build.make src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 94%] Building CXX object src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/energyanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/energyanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/energyanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/energyanalysis/tests/legacyenergy.cpp [ 94%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/tests/distance.cpp [ 94%] Building CXX object src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/energyanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/energyanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/energyanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 94%] Linking CXX executable ../../../../bin/energyanalysis-test cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/energyanalysis/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/energyanalysis-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/energyanalysis-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm [ 94%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/tests/freevolume.cpp [ 94%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask32.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests/bitmask32.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 94%] Built target energyanalysis-test make -f src/gromacs/tools/tests/CMakeFiles/tool-test.dir/build.make src/gromacs/tools/tests/CMakeFiles/tool-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tools/tests /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/tools/tests /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/tools/tests/CMakeFiles/tool-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/tools/tests/CMakeFiles/tool-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/tools/tests/CMakeFiles/tool-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/tools/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/tools/tests/CMakeFiles/tool-test.dir/depend.internal". Scanning dependencies of target tool-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f src/gromacs/tools/tests/CMakeFiles/tool-test.dir/build.make src/gromacs/tools/tests/CMakeFiles/tool-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 94%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/report-methods.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/tools/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/tools/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tool-test.dir/report-methods.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tools/tests/report-methods.cpp [ 95%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/tests/pairdist.cpp [ 95%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/tools/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/tools/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 95%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/tests/rdf.cpp [ 95%] Linking CXX executable ../../../../bin/tool-test cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/tools/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/tool-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/tool-test.dir/report-methods.cpp.o CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/tool-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm [ 95%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask64.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests/bitmask64.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 95%] Built target tool-test make -f src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/depend.internal". Scanning dependencies of target mdrun-non-integrator-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 95%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/minimize.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-non-integrator-test.dir/minimize.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests/minimize.cpp [ 95%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/tests/sasa.cpp [ 95%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/tests/select.cpp [ 95%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp [ 95%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask128.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests/bitmask128.cpp [ 96%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests/rerun.cpp [ 96%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/toputils.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/selection-test.dir/toputils.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/tests/toputils.cpp [ 96%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 96%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests/keyvaluetreeserializer.cpp [ 96%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/topologyinformation.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/topologyinformation.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/tests/topologyinformation.cpp [ 96%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/tests/trajectory.cpp [ 96%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 96%] Linking CXX executable ../../../../bin/selection-test cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/selection/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/selection-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/selection-test.dir/indexutil.cpp.o CMakeFiles/selection-test.dir/nbsearch.cpp.o CMakeFiles/selection-test.dir/poscalc.cpp.o CMakeFiles/selection-test.dir/selectioncollection.cpp.o CMakeFiles/selection-test.dir/selectionoption.cpp.o CMakeFiles/selection-test.dir/toputils.cpp.o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/selection-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm [ 96%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/tests/unionfind.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 96%] Built target selection-test make -f src/programs/mdrun/tests/CMakeFiles/legacy-mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/legacy-mdrun-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests/CMakeFiles/legacy-mdrun-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests/CMakeFiles/legacy-mdrun-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests/CMakeFiles/legacy-mdrun-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests/CMakeFiles/legacy-mdrun-test.dir/depend.internal". Scanning dependencies of target legacy-mdrun-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f src/programs/mdrun/tests/CMakeFiles/legacy-mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/legacy-mdrun-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 97%] Building CXX object src/programs/mdrun/tests/CMakeFiles/legacy-mdrun-test.dir/tpitest.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/legacy-mdrun-test.dir/tpitest.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests/tpitest.cpp [ 97%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests/keyvaluetreetransform.cpp [ 97%] Building CXX object src/programs/mdrun/tests/CMakeFiles/legacy-mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/legacy-mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 97%] Linking CXX executable ../../../../bin/mdrun-non-integrator-test cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-non-integrator-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrun-non-integrator-test.dir/minimize.cpp.o CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrun_test_objlib.dir/energyreader.cpp.o CMakeFiles/mdrun_test_objlib.dir/energycomparison.cpp.o CMakeFiles/mdrun_test_objlib.dir/moduletest.cpp.o CMakeFiles/mdrun_test_objlib.dir/simulationdatabase.cpp.o CMakeFiles/mdrun_test_objlib.dir/terminationhelper.cpp.o CMakeFiles/mdrun_test_objlib.dir/trajectorycomparison.cpp.o CMakeFiles/mdrun_test_objlib.dir/trajectoryreader.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -o ../../../../bin/mdrun-non-integrator-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm [ 97%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 97%] Linking CXX executable ../../../../bin/legacy-mdrun-test cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/legacy-mdrun-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/legacy-mdrun-test.dir/tpitest.cpp.o CMakeFiles/legacy-mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrun_test_objlib.dir/energyreader.cpp.o CMakeFiles/mdrun_test_objlib.dir/energycomparison.cpp.o CMakeFiles/mdrun_test_objlib.dir/moduletest.cpp.o CMakeFiles/mdrun_test_objlib.dir/simulationdatabase.cpp.o CMakeFiles/mdrun_test_objlib.dir/terminationhelper.cpp.o CMakeFiles/mdrun_test_objlib.dir/trajectorycomparison.cpp.o CMakeFiles/mdrun_test_objlib.dir/trajectoryreader.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -o ../../../../bin/legacy-mdrun-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 97%] Built target mdrun-non-integrator-test make -f src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/depend.internal". Scanning dependencies of target mdrun-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 97%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/compressed_x_output.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/compressed_x_output.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests/compressed_x_output.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 97%] Built target legacy-mdrun-test [ 97%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/grompp.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/grompp.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests/grompp.cpp [ 97%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/initialconstraints.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/initialconstraints.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests/initialconstraints.cpp [ 97%] Linking CXX executable ../../../../bin/trajectoryanalysis-test cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/trajectoryanalysis/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/trajectoryanalysis-test.dir/link.txt --verbose=1 [ 97%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/interactiveMD.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/interactiveMD.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests/interactiveMD.cpp /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o CMakeFiles/trajectoryanalysis-test.dir/topologyinformation.cpp.o CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o ../../analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -o ../../../../bin/trajectoryanalysis-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 97%] Built target trajectoryanalysis-test [ 97%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/pmetest.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/pmetest.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests/pmetest.cpp [ 97%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/swapcoords.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/swapcoords.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests/swapcoords.cpp [ 97%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests/tabulated_bonded_interactions.cpp [ 97%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/gmxregex.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/gmxregex.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests/gmxregex.cpp [ 97%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/termination.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/termination.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests/termination.cpp [ 97%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/trajectory_writing.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/trajectory_writing.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests/trajectory_writing.cpp [ 97%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/mimic.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/mimic.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests/mimic.cpp [ 98%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 98%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/logger.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/logger.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests/logger.cpp [ 98%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/mutex.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/mutex.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests/mutex.cpp [ 98%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/path.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/path.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests/path.cpp [ 98%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests/physicalnodecommunicator.cpp [100%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/stringutil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/stringutil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests/stringutil.cpp [100%] Linking CXX executable ../../../../bin/mdrun-test cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrun-test.dir/compressed_x_output.cpp.o CMakeFiles/mdrun-test.dir/grompp.cpp.o CMakeFiles/mdrun-test.dir/initialconstraints.cpp.o CMakeFiles/mdrun-test.dir/interactiveMD.cpp.o CMakeFiles/mdrun-test.dir/pmetest.cpp.o CMakeFiles/mdrun-test.dir/swapcoords.cpp.o CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o CMakeFiles/mdrun-test.dir/termination.cpp.o CMakeFiles/mdrun-test.dir/trajectory_writing.cpp.o CMakeFiles/mdrun-test.dir/mimic.cpp.o CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrun_test_objlib.dir/energyreader.cpp.o CMakeFiles/mdrun_test_objlib.dir/energycomparison.cpp.o CMakeFiles/mdrun_test_objlib.dir/moduletest.cpp.o CMakeFiles/mdrun_test_objlib.dir/simulationdatabase.cpp.o CMakeFiles/mdrun_test_objlib.dir/terminationhelper.cpp.o CMakeFiles/mdrun_test_objlib.dir/trajectorycomparison.cpp.o CMakeFiles/mdrun_test_objlib.dir/trajectoryreader.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -o ../../../../bin/mdrun-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm [100%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/textreader.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/textreader.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests/textreader.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [100%] Built target mdrun-test [100%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/textwriter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/textwriter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests/textwriter.cpp [100%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/typetraits.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/typetraits.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests/typetraits.cpp [100%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [100%] Linking CXX executable ../../../../bin/utility-test cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/utility-test.dir/alignedallocator.cpp.o CMakeFiles/utility-test.dir/arrayref.cpp.o CMakeFiles/utility-test.dir/bitmask32.cpp.o CMakeFiles/utility-test.dir/bitmask64.cpp.o CMakeFiles/utility-test.dir/bitmask128.cpp.o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o CMakeFiles/utility-test.dir/gmxregex.cpp.o CMakeFiles/utility-test.dir/logger.cpp.o CMakeFiles/utility-test.dir/mutex.cpp.o CMakeFiles/utility-test.dir/path.cpp.o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o CMakeFiles/utility-test.dir/stringutil.cpp.o CMakeFiles/utility-test.dir/textreader.cpp.o CMakeFiles/utility-test.dir/textwriter.cpp.o CMakeFiles/utility-test.dir/typetraits.cpp.o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [100%] Built target utility-test make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/serial 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Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/CMakeFiles/tests.dir/depend.internal". Scanning dependencies of target tests make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[3]: Nothing to be done for 'CMakeFiles/tests.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [100%] Built target tests make -f CMakeFiles/run-ctest-nophys.dir/build.make CMakeFiles/run-ctest-nophys.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/CMakeFiles/run-ctest-nophys.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/CMakeFiles/run-ctest-nophys.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/CMakeFiles/run-ctest-nophys.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/CMakeFiles/run-ctest-nophys.dir/depend.internal". Scanning dependencies of target run-ctest-nophys make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f CMakeFiles/run-ctest-nophys.dir/build.make CMakeFiles/run-ctest-nophys.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [100%] Running all tests except physical validation /usr/bin/ctest --output-on-failure -E physicalvalidationtests Test project /builddir/build/BUILD/gromacs-2019.6/serial Start 1: TestUtilsUnitTests 1/40 Test #1: TestUtilsUnitTests ............... Passed 0.06 sec Start 2: TestUtilsMpiUnitTests 2/40 Test #2: TestUtilsMpiUnitTests ............ Passed 0.02 sec Start 3: MdlibUnitTest 3/40 Test #3: MdlibUnitTest .................... Passed 0.03 sec Start 4: AppliedForcesUnitTest 4/40 Test #4: AppliedForcesUnitTest ............ Passed 0.02 sec Start 5: ListedForcesTest 5/40 Test #5: ListedForcesTest ................. Passed 0.03 sec Start 6: CommandLineUnitTests 6/40 Test #6: CommandLineUnitTests ............. Passed 0.04 sec Start 7: DomDecTests 7/40 Test #7: DomDecTests ...................... Passed 0.02 sec Start 8: EwaldUnitTests 8/40 Test #8: EwaldUnitTests ................... Passed 0.48 sec Start 9: FFTUnitTests 9/40 Test #9: FFTUnitTests ..................... Passed 0.06 sec Start 10: GpuUtilsUnitTests 10/40 Test #10: GpuUtilsUnitTests ................ Passed 0.02 sec Start 11: HardwareUnitTests 11/40 Test #11: HardwareUnitTests ................ Passed 0.05 sec Start 12: MathUnitTests 12/40 Test #12: MathUnitTests .................... Passed 0.03 sec Start 13: MdrunUtilityUnitTests 13/40 Test #13: MdrunUtilityUnitTests ............ Passed 0.02 sec Start 14: MdrunUtilityMpiUnitTests 14/40 Test #14: MdrunUtilityMpiUnitTests ......... Passed 0.04 sec Start 15: OnlineHelpUnitTests 15/40 Test #15: OnlineHelpUnitTests .............. Passed 0.03 sec Start 16: OptionsUnitTests 16/40 Test #16: OptionsUnitTests ................. Passed 0.04 sec Start 17: RandomUnitTests 17/40 Test #17: RandomUnitTests .................. Passed 0.04 sec Start 18: RestraintTests 18/40 Test #18: RestraintTests ................... Passed 0.02 sec Start 19: TableUnitTests 19/40 Test #19: TableUnitTests ................... Passed 0.18 sec Start 20: TaskAssignmentUnitTests 20/40 Test #20: TaskAssignmentUnitTests .......... Passed 0.02 sec Start 21: UtilityUnitTests 21/40 Test #21: UtilityUnitTests ................. Passed 0.06 sec Start 22: UtilityMpiUnitTests 22/40 Test #22: UtilityMpiUnitTests .............. Passed 0.02 sec Start 23: FileIOTests 23/40 Test #23: FileIOTests ...................... Passed 0.03 sec Start 24: PullTest 24/40 Test #24: PullTest ......................... Passed 0.02 sec Start 25: AwhTest 25/40 Test #25: AwhTest .......................... Passed 0.03 sec Start 26: SimdUnitTests 26/40 Test #26: SimdUnitTests .................... Passed 0.02 sec Start 27: CompatibilityHelpersTests 27/40 Test #27: CompatibilityHelpersTests ........ Passed 0.02 sec Start 28: GmxAnaTest 28/40 Test #28: GmxAnaTest ....................... Passed 0.09 sec Start 29: GmxPreprocessTests 29/40 Test #29: GmxPreprocessTests ............... Passed 0.41 sec Start 30: Pdb2gmxTest 30/40 Test #30: Pdb2gmxTest ...................... Passed 27.84 sec Start 31: CorrelationsTest 31/40 Test #31: CorrelationsTest ................. Passed 0.09 sec Start 32: AnalysisDataUnitTests 32/40 Test #32: AnalysisDataUnitTests ............ Passed 0.08 sec Start 33: SelectionUnitTests 33/40 Test #33: SelectionUnitTests ............... Passed 0.34 sec Start 34: TrajectoryAnalysisUnitTests 34/40 Test #34: TrajectoryAnalysisUnitTests ...... Passed 1.22 sec Start 35: EnergyAnalysisUnitTests 35/40 Test #35: EnergyAnalysisUnitTests .......... Passed 0.09 sec Start 36: ToolUnitTests 36/40 Test #36: ToolUnitTests .................... Passed 0.87 sec Start 37: MdrunTests 37/40 Test #37: MdrunTests ....................... Passed 3.06 sec Start 38: MdrunNonIntegratorTests 38/40 Test #38: MdrunNonIntegratorTests .......... Passed 6.32 sec Start 39: LegacyGroupSchemeMdrunTests 39/40 Test #39: LegacyGroupSchemeMdrunTests ...... Passed 0.87 sec Start 40: MdrunMpiTests 40/40 Test #40: MdrunMpiTests .................... Passed 1.98 sec 100% tests passed, 0 tests failed out of 40 Label Time Summary: GTest = 44.71 sec*proc (40 tests) IntegrationTest = 12.32 sec*proc (5 tests) MpiTest = 0.07 sec*proc (3 tests) SlowTest = 27.84 sec*proc (1 test) UnitTest = 4.54 sec*proc (34 tests) Total Test time (real) = 44.77 sec make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [100%] Built target run-ctest-nophys make -f tests/CMakeFiles/missing-tests-notice.dir/build.make tests/CMakeFiles/missing-tests-notice.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/tests /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/tests /builddir/build/BUILD/gromacs-2019.6/serial/tests/CMakeFiles/missing-tests-notice.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/tests/CMakeFiles/missing-tests-notice.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/tests/CMakeFiles/missing-tests-notice.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/tests/CMakeFiles/missing-tests-notice.dir/depend.internal". Scanning dependencies of target missing-tests-notice make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f tests/CMakeFiles/missing-tests-notice.dir/build.make tests/CMakeFiles/missing-tests-notice.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [100%] Some tests not available cd /builddir/build/BUILD/gromacs-2019.6/serial/tests && /usr/bin/cmake -E echo "NOTE: Regression tests have not been run. If you want to run them from the build system, get the correct version of the regression tests package and set REGRESSIONTEST_PATH in CMake to point to it, or set REGRESSIONTEST_DOWNLOAD=ON." NOTE: Regression tests have not been run. If you want to run them from the build system, get the correct version of the regression tests package and set REGRESSIONTEST_PATH in CMake to point to it, or set REGRESSIONTEST_DOWNLOAD=ON. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [100%] Built target missing-tests-notice make -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/CMakeFiles/check.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/CMakeFiles/check.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/CMakeFiles/check.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/CMakeFiles/check.dir/depend.internal". Scanning dependencies of target check make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[3]: Nothing to be done for 'CMakeFiles/check.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [100%] Built target check make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019.6/serial/CMakeFiles 0 make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' + test -n '' + for mpi in '' mpich openmpi + test mpich = openmpi + test -n mpich + module load mpi/mpich-arm ++ /usr/share/lmod/lmod/libexec/lmod sh load mpi/mpich-arm + eval '__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib/mpich/lib:1;' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH=/usr/lib/mpich/lib;' export 'LD_LIBRARY_PATH;' '__LMOD_REF_COUNT_LOADEDMODULES=mpi/mpich-arm:1;' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES=mpi/mpich-arm;' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/man/mpich-arm:1\;/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=:/usr/share/man/mpich-arm:/usr/share/lmod/lmod/share/man;' export 'MANPATH;' '__LMOD_REF_COUNT_MODULEPATH=/etc/modulefiles:1\;/usr/share/modulefiles:1\;/usr/share/modulefiles/Linux:1\;/usr/share/modulefiles/Core:1\;/usr/share/lmod/lmod/modulefiles/Core:1;' export '__LMOD_REF_COUNT_MODULEPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' 'MPI_BIN=/usr/lib/mpich/bin;' export 'MPI_BIN;' 'MPI_COMPILER=mpich-arm;' export 'MPI_COMPILER;' 'MPI_FORTRAN_MOD_DIR=/usr/lib/gfortran/modules/mpich;' export 'MPI_FORTRAN_MOD_DIR;' 'MPI_HOME=/usr/lib/mpich;' export 'MPI_HOME;' 'MPI_INCLUDE=/usr/include/mpich-arm;' export 'MPI_INCLUDE;' 'MPI_LIB=/usr/lib/mpich/lib;' export 'MPI_LIB;' 'MPI_MAN=/usr/share/man/mpich-arm;' export 'MPI_MAN;' 'MPI_PYTHON2_SITEARCH=/usr/lib/python2.7/site-packages/mpich;' export 'MPI_PYTHON2_SITEARCH;' 'MPI_PYTHON3_SITEARCH=/usr/lib/python3.7/site-packages/mpich;' export 'MPI_PYTHON3_SITEARCH;' 'MPI_PYTHON_SITEARCH=/usr/lib/python2.7/site-packages/mpich;' export 'MPI_PYTHON_SITEARCH;' 'MPI_SUFFIX=_mpich;' export 'MPI_SUFFIX;' 'MPI_SYSCONFIG=/etc/mpich-arm;' export 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/lib/mpich/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/lib/mpich/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib/mpich/lib/pkgconfig:1\;/usr/lib/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=/usr/lib/mpich/lib/pkgconfig::/usr/lib/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' '__LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/mpich-arm:1;' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_=/usr/share/modulefiles/mpi/mpich-arm;' export '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=b3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib/mpich/lib:1 ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ LD_LIBRARY_PATH=/usr/lib/mpich/lib ++ export LD_LIBRARY_PATH ++ __LMOD_REF_COUNT_LOADEDMODULES=mpi/mpich-arm:1 ++ export __LMOD_REF_COUNT_LOADEDMODULES ++ LOADEDMODULES=mpi/mpich-arm ++ export LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH='/usr/share/man/mpich-arm:1;/usr/share/lmod/lmod/share/man:1' ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=:/usr/share/man/mpich-arm:/usr/share/lmod/lmod/share/man ++ export MANPATH ++ __LMOD_REF_COUNT_MODULEPATH='/etc/modulefiles:1;/usr/share/modulefiles:1;/usr/share/modulefiles/Linux:1;/usr/share/modulefiles/Core:1;/usr/share/lmod/lmod/modulefiles/Core:1' ++ export __LMOD_REF_COUNT_MODULEPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ MPI_BIN=/usr/lib/mpich/bin ++ export MPI_BIN ++ MPI_COMPILER=mpich-arm ++ export MPI_COMPILER ++ MPI_FORTRAN_MOD_DIR=/usr/lib/gfortran/modules/mpich ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib/mpich ++ export MPI_HOME ++ MPI_INCLUDE=/usr/include/mpich-arm ++ export MPI_INCLUDE ++ MPI_LIB=/usr/lib/mpich/lib ++ export MPI_LIB ++ MPI_MAN=/usr/share/man/mpich-arm ++ export MPI_MAN ++ MPI_PYTHON2_SITEARCH=/usr/lib/python2.7/site-packages/mpich ++ export MPI_PYTHON2_SITEARCH ++ MPI_PYTHON3_SITEARCH=/usr/lib/python3.7/site-packages/mpich ++ export MPI_PYTHON3_SITEARCH ++ MPI_PYTHON_SITEARCH=/usr/lib/python2.7/site-packages/mpich ++ export MPI_PYTHON_SITEARCH ++ MPI_SUFFIX=_mpich ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/mpich-arm ++ export MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/lib/mpich/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/lib/mpich/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib/mpich/lib/pkgconfig:1;/usr/lib/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=/usr/lib/mpich/lib/pkgconfig::/usr/lib/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ __LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/mpich-arm:1 ++ export __LMOD_REF_COUNT__LMFILES_ ++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-arm ++ export _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=b3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ== ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + test -n mpich + xLD_LIBRARY_PATH=/usr/lib/mpich/lib:/builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/lib/mpich/lib + LD_LIBRARY_PATH=/usr/lib/mpich/lib:/builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/lib/mpich/lib + make -C mpich VERBOSE=1 -j5 check make: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2019.6 -B/builddir/build/BUILD/gromacs-2019.6/mpich --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 check make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2019.6 -B/builddir/build/BUILD/gromacs-2019.6/mpich --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019.6/mpich/CMakeFiles 96 make -f CMakeFiles/Makefile2 CMakeFiles/check.dir/all make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend make -f src/external/googletest/CMakeFiles/gmock.dir/build.make src/external/googletest/CMakeFiles/gmock.dir/depend make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' cd /builddir/build/BUILD/gromacs-2019.6/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2019.6/mpich /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake --color= make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' cd /builddir/build/BUILD/gromacs-2019.6/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2019.6/mpich /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake --color= cd /builddir/build/BUILD/gromacs-2019.6/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/external/googletest /builddir/build/BUILD/gromacs-2019.6/mpich /builddir/build/BUILD/gromacs-2019.6/mpich/src/external/googletest /builddir/build/BUILD/gromacs-2019.6/mpich/src/external/googletest/CMakeFiles/gmock.dir/DependInfo.cmake --color= make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' cd /builddir/build/BUILD/gromacs-2019.6/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/mpich /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/external/googletest/CMakeFiles/gmock.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/external/googletest/CMakeFiles/gmock.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/external/googletest/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/external/googletest/CMakeFiles/gmock.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/onlinehelp/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend.internal". make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_external.dir/build'. make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' cd /builddir/build/BUILD/gromacs-2019.6/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/mpich /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' Scanning dependencies of target onlinehelp-test-shared make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build [ 1%] Built target libgromacs_external Scanning dependencies of target mdrunutility-test-shared make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build Scanning dependencies of target gmock make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make -f src/external/googletest/CMakeFiles/gmock.dir/build.make src/external/googletest/CMakeFiles/gmock.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 2%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o [ 2%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/tests/mock_helptopic.cpp cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrunutility/tests/threadaffinitytest.cpp [ 2%] Building CXX object src/external/googletest/CMakeFiles/gmock.dir/googlemock/src/gmock-all.cc.o [ 3%] Building CXX object src/external/googletest/CMakeFiles/gmock.dir/googletest/src/gtest-all.cc.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/external/googletest && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -D_GNU_SOURCE=1 -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmock.dir/googlemock/src/gmock-all.cc.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/src/gmock-all.cc cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/external/googletest && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -D_GNU_SOURCE=1 -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmock.dir/googletest/src/gtest-all.cc.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/src/gtest-all.cc make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[3]: Nothing to be done for 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Scanning dependencies of target testutils make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make -f src/testutils/CMakeFiles/testutils.dir/build.make src/testutils/CMakeFiles/testutils.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 82%] Building CXX object src/testutils/CMakeFiles/testutils.dir/filematchers.cpp.o [ 82%] Building CXX object src/testutils/CMakeFiles/testutils.dir/cmdlinetest.cpp.o [ 82%] Building CXX object src/testutils/CMakeFiles/testutils.dir/conftest.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem 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Building CXX object src/testutils/CMakeFiles/testutils.dir/interactivetest.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 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-grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils.dir/interactivetest.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/interactivetest.cpp cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils.dir/loggertest.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/loggertest.cpp [ 82%] Building CXX object src/testutils/CMakeFiles/testutils.dir/mpi-printer.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/testutils/../external/tinyxml2 -isystem 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils.dir/refdata.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/refdata.cpp [ 83%] Building CXX object src/testutils/CMakeFiles/testutils.dir/refdata-xml.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils.dir/refdata-xml.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/refdata-xml.cpp [ 83%] Building CXX object src/testutils/CMakeFiles/testutils.dir/stdiohelper.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/testutils/../external/tinyxml2 -isystem 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-fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils.dir/testoptions.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/testoptions.cpp [ 84%] Building CXX object src/testutils/CMakeFiles/testutils.dir/textblockmatchers.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/testutils/../external/tinyxml2 -isystem 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/builddir/build/BUILD/gromacs-2019.6/src/testutils/xvgtest.cpp [ 84%] Building CXX object src/testutils/CMakeFiles/testutils.dir/__/external/tinyxml2/tinyxml2.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils.dir/__/external/tinyxml2/tinyxml2.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/tinyxml2/tinyxml2.cpp [ 84%] Linking CXX static library ../../lib/libtestutils.a cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/testutils && /usr/bin/cmake -P CMakeFiles/testutils.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/testutils && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils.dir/link.txt --verbose=1 /usr/bin/ar qc ../../lib/libtestutils.a CMakeFiles/testutils.dir/cmdlinetest.cpp.o CMakeFiles/testutils.dir/conftest.cpp.o CMakeFiles/testutils.dir/filematchers.cpp.o CMakeFiles/testutils.dir/interactivetest.cpp.o CMakeFiles/testutils.dir/loggertest.cpp.o CMakeFiles/testutils.dir/mpi-printer.cpp.o CMakeFiles/testutils.dir/mpitest.cpp.o CMakeFiles/testutils.dir/refdata.cpp.o CMakeFiles/testutils.dir/refdata-xml.cpp.o CMakeFiles/testutils.dir/stdiohelper.cpp.o CMakeFiles/testutils.dir/stringtest.cpp.o CMakeFiles/testutils.dir/testasserts.cpp.o CMakeFiles/testutils.dir/testfilemanager.cpp.o CMakeFiles/testutils.dir/testfileredirector.cpp.o CMakeFiles/testutils.dir/testinit.cpp.o CMakeFiles/testutils.dir/testmatchers.cpp.o CMakeFiles/testutils.dir/testoptions.cpp.o CMakeFiles/testutils.dir/textblockmatchers.cpp.o CMakeFiles/testutils.dir/xvgtest.cpp.o CMakeFiles/testutils.dir/__/external/tinyxml2/tinyxml2.cpp.o /usr/bin/ranlib ../../lib/libtestutils.a make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 84%] Built target testutils make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/depend make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' cd /builddir/build/BUILD/gromacs-2019.6/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/testutils/tests /builddir/build/BUILD/gromacs-2019.6/mpich /builddir/build/BUILD/gromacs-2019.6/mpich/src/testutils/tests 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Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/compat/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/testutils/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/mdlib/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/testutils/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/testutils/tests/CMakeFiles/testutils-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/applied-forces/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/depend.internal". Scanning dependencies of target compat-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build Scanning dependencies of target testutils-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' Scanning dependencies of target testutils-test make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/build Scanning dependencies of target applied-forces-test make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build [ 84%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/make_unique.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/make_unique.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/compat/tests/make_unique.cpp [ 84%] Building CXX object src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/tests/mpitest.cpp make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 85%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/interactivetest.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/interactivetest.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/tests/interactivetest.cpp Scanning dependencies of target mdlib-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build [ 85%] Building CXX object src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/electricfield.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/applied-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/applied-forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/applied-forces-test.dir/electricfield.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/applied-forces/tests/electricfield.cpp make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 85%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/tests/calc_verletbuf.cpp [ 85%] Building CXX object src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 85%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/pointers.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/pointers.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/compat/tests/pointers.cpp [ 85%] Linking CXX executable ../../../bin/testutils-mpi-test cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-mpi-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_mpich.a ../../../lib/libgmock.a -lpthread /usr/lib/mpich/lib/libmpi.so -fopenmp /usr/lib/libtng_io.so.1.8.2 /usr/lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/liblmfit.so -lpthread /usr/lib/mpich/lib/libmpi.so [ 85%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/mdebin.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/mdebin.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/tests/mdebin.cpp [ 85%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/refdata_tests.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/tests/refdata_tests.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 85%] Built target testutils-mpi-test make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' cd /builddir/build/BUILD/gromacs-2019.6/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/tests /builddir/build/BUILD/gromacs-2019.6/mpich /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/listed-forces/tests /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/listed-forces/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/depend.internal". Scanning dependencies of target listed-forces-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 85%] Building CXX object src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/bonded.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/listed-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/listed-forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/listed-forces-test.dir/bonded.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/tests/bonded.cpp [ 85%] Building CXX object src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/applied-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/applied-forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 85%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 85%] Linking CXX executable ../../../../bin/applied-forces-test cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/applied-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied-forces-test.dir/link.txt --verbose=1 /usr/bin/c++ -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/applied-forces-test.dir/electricfield.cpp.o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/applied-forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a -lpthread /usr/lib/mpich/lib/libmpi.so -fopenmp /usr/lib/libtng_io.so.1.8.2 /usr/lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/liblmfit.so -lpthread /usr/lib/mpich/lib/libmpi.so [ 86%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settle.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/tests/settle.cpp [ 86%] Linking CXX executable ../../../../bin/compat-test cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/compat/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/compat-test.dir/link.txt --verbose=1 /usr/bin/c++ -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/compat-test.dir/make_unique.cpp.o CMakeFiles/compat-test.dir/pointers.cpp.o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/compat-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a -lpthread /usr/lib/mpich/lib/libmpi.so -fopenmp /usr/lib/libtng_io.so.1.8.2 /usr/lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/liblmfit.so -lpthread /usr/lib/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 86%] Built target applied-forces-test make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' cd /builddir/build/BUILD/gromacs-2019.6/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/tests /builddir/build/BUILD/gromacs-2019.6/mpich /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/commandline/tests /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/commandline/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend.internal". [ 86%] Building CXX object src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o Scanning dependencies of target commandline-test cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/listed-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/listed-forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 86%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/tests/cmdlinehelpmodule.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 86%] Built target compat-test make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' cd /builddir/build/BUILD/gromacs-2019.6/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/tests /builddir/build/BUILD/gromacs-2019.6/mpich /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/domdec/tests /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/domdec/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend.internal". Scanning dependencies of target domdec-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 86%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/hashedmap.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/domdec/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/hashedmap.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/tests/hashedmap.cpp [ 86%] Linking CXX executable ../../../../bin/listed-forces-test cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/listed-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/listed-forces-test.dir/link.txt --verbose=1 /usr/bin/c++ -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/listed-forces-test.dir/bonded.cpp.o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/listed-forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a -lpthread /usr/lib/mpich/lib/libmpi.so -fopenmp /usr/lib/libtng_io.so.1.8.2 /usr/lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/liblmfit.so -lpthread /usr/lib/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 86%] Built target listed-forces-test make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' cd /builddir/build/BUILD/gromacs-2019.6/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/tests /builddir/build/BUILD/gromacs-2019.6/mpich /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/ewald/tests /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/ewald/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend.internal". Scanning dependencies of target ewald-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 87%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/tests/pmebsplinetest.cpp [ 87%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/domdec/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/tests/localatomsetmanager.cpp [ 87%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp [ 87%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/shake.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/tests/shake.cpp [ 87%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/tests/testasserts_tests.cpp [ 87%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/domdec/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 87%] Linking CXX executable ../../../../bin/domdec-test cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-test.dir/link.txt --verbose=1 /usr/bin/c++ -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/domdec-test.dir/hashedmap.cpp.o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/domdec-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a -lpthread /usr/lib/mpich/lib/libmpi.so -fopenmp /usr/lib/libtng_io.so.1.8.2 /usr/lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/liblmfit.so -lpthread /usr/lib/mpich/lib/libmpi.so [ 87%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 87%] Built target domdec-test [ 87%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmegathertest.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/tests/pmegathertest.cpp [ 87%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/tests/pmesolvetest.cpp [ 87%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/tests/simulationsignal.cpp [ 87%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/tests/xvgtest_tests.cpp [ 87%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 87%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/updategroups.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/updategroups.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/tests/updategroups.cpp [ 87%] Linking CXX executable ../../../bin/testutils-test cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 /usr/bin/c++ -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_mpich.a ../../../lib/libgmock.a -lpthread /usr/lib/mpich/lib/libmpi.so -fopenmp /usr/lib/libtng_io.so.1.8.2 /usr/lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/liblmfit.so -lpthread /usr/lib/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 87%] Built target testutils-test make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' cd /builddir/build/BUILD/gromacs-2019.6/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fft/tests /builddir/build/BUILD/gromacs-2019.6/mpich /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/fft/tests /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/fft/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend.internal". Scanning dependencies of target fft-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 87%] Building CXX object src/gromacs/fft/tests/CMakeFiles/fft-test.dir/fft.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/fft/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fft-test.dir/fft.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fft/tests/fft.cpp [ 87%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/tests/cmdlinemodulemanagertest.cpp [ 87%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/tests/updategroupscog.cpp [ 87%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 87%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/tests/pmesplinespreadtest.cpp [ 87%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/tests/pmetestcommon.cpp [ 88%] Building CXX object src/gromacs/fft/tests/CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/fft/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 88%] Linking CXX executable ../../../../bin/fft-test cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 /usr/bin/c++ -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a -lpthread /usr/lib/mpich/lib/libmpi.so -fopenmp /usr/lib/libtng_io.so.1.8.2 /usr/lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/liblmfit.so -lpthread /usr/lib/mpich/lib/libmpi.so [ 88%] Linking CXX executable ../../../../bin/mdlib-test cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 /usr/bin/c++ -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/mdebin.cpp.o CMakeFiles/mdlib-test.dir/settle.cpp.o CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/updategroups.cpp.o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdlib-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a -lpthread /usr/lib/mpich/lib/libmpi.so -fopenmp /usr/lib/libtng_io.so.1.8.2 /usr/lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/liblmfit.so -lpthread /usr/lib/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 88%] Built target fft-test make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' cd /builddir/build/BUILD/gromacs-2019.6/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/tests /builddir/build/BUILD/gromacs-2019.6/mpich /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/gpu_utils/tests /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/gpu_utils/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend.internal". Scanning dependencies of target gpu_utils-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 88%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/gputest.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/gputest.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/tests/gputest.cpp [ 88%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/tests/testhardwarecontexts.cpp [ 88%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/tests/hostallocator.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 88%] Built target mdlib-test make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' cd /builddir/build/BUILD/gromacs-2019.6/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/tests /builddir/build/BUILD/gromacs-2019.6/mpich /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/hardware/tests /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/hardware/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend.internal". Scanning dependencies of target hardware-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 88%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/cpuinfo.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/hardware/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/hardware-test.dir/cpuinfo.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/tests/cpuinfo.cpp [ 88%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/tests/cmdlineparser.cpp [ 88%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/hardware/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/tests/hardwaretopology.cpp [ 89%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/hardware/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 89%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 89%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp [ 89%] Linking CXX executable ../../../../bin/ewald-test cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 /usr/bin/c++ -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/ewald-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a -lpthread /usr/lib/mpich/lib/libmpi.so -fopenmp /usr/lib/libtng_io.so.1.8.2 /usr/lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/liblmfit.so -lpthread /usr/lib/mpich/lib/libmpi.so [ 89%] Linking CXX executable ../../../../bin/hardware-test cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 /usr/bin/c++ -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/hardware-test.dir/cpuinfo.cpp.o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a -lpthread /usr/lib/mpich/lib/libmpi.so -fopenmp /usr/lib/libtng_io.so.1.8.2 /usr/lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/liblmfit.so -lpthread /usr/lib/mpich/lib/libmpi.so [ 89%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/pargs.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/pargs.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/tests/pargs.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 89%] Built target hardware-test make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' cd /builddir/build/BUILD/gromacs-2019.6/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests /builddir/build/BUILD/gromacs-2019.6/mpich /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/math/tests /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/math/tests/CMakeFiles/math-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/math/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/math/tests/CMakeFiles/math-test.dir/depend.internal". Scanning dependencies of target math-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 89%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/arrayrefwithpadding.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 89%] Built target ewald-test make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' cd /builddir/build/BUILD/gromacs-2019.6/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2019.6/mpich /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend.internal". Scanning dependencies of target mdrunutility-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 89%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrunutility/tests/threadaffinity-mpi.cpp [ 89%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 89%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/arrayref.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/arrayrefwithpadding.h:49, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/arrayrefwithpadding.cpp:43: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = gmx::Allocator]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' cd /builddir/build/BUILD/gromacs-2019.6/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2019.6/mpich /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend.internal". Scanning dependencies of target mdrunutility-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 89%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrunutility/tests/threadaffinity.cpp In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/arrayref.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/arrayrefwithpadding.h:49, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/arrayrefwithpadding.cpp:43: /usr/include/c++/9/bits/stl_vector.h: In member function 'testing::Test* testing::internal::TestFactoryImpl::CreateTest() [with TestClass = gmx::{anonymous}::ArrayRefWithPaddingTest_ConstructFromPointersWorks_Test >]': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h: In member function 'testing::Test* testing::internal::TestFactoryImpl::CreateTest() [with TestClass = gmx::{anonymous}::ArrayRefWithPaddingTest_AssignFromPaddedVectorWorks_Test >]': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ [ 89%] Linking CXX executable ../../../../bin/mdrunutility-mpi-test cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a -lpthread /usr/lib/mpich/lib/libmpi.so -fopenmp /usr/lib/libtng_io.so.1.8.2 /usr/lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/liblmfit.so -lpthread /usr/lib/mpich/lib/libmpi.so [ 90%] Linking CXX executable ../../../../bin/commandline-test cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 /usr/bin/c++ -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o CMakeFiles/commandline-test.dir/pargs.cpp.o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/commandline-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a -lpthread /usr/lib/mpich/lib/libmpi.so -fopenmp /usr/lib/libtng_io.so.1.8.2 /usr/lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/liblmfit.so -lpthread /usr/lib/mpich/lib/libmpi.so [ 91%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/dofit.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/dofit.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/dofit.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 91%] Built target mdrunutility-mpi-test [ 91%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 91%] Built target commandline-test make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' cd /builddir/build/BUILD/gromacs-2019.6/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2019.6/mpich /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/onlinehelp/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend.internal". Scanning dependencies of target onlinehelp-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 91%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/tests/helpformat.cpp [ 91%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/tests/helpmanager.cpp [ 91%] Linking CXX executable ../../../../bin/mdrunutility-test cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 /usr/bin/c++ -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a -lpthread /usr/lib/mpich/lib/libmpi.so -fopenmp /usr/lib/libtng_io.so.1.8.2 /usr/lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/liblmfit.so -lpthread /usr/lib/mpich/lib/libmpi.so [ 91%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/functions.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/functions.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/functions.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 91%] Built target mdrunutility-test make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' cd /builddir/build/BUILD/gromacs-2019.6/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/tests /builddir/build/BUILD/gromacs-2019.6/mpich /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/options/tests /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/options/tests/CMakeFiles/options-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/options/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/options/tests/CMakeFiles/options-test.dir/depend.internal". Scanning dependencies of target options-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 91%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/tests/abstractoptionstorage.cpp [ 91%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/tests/helpwritercontext.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include/gtest/gtest.h:56, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/functions.cpp:49: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ [ 91%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' cd /builddir/build/BUILD/gromacs-2019.6/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tests /builddir/build/BUILD/gromacs-2019.6/mpich /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/random/tests /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/random/tests/CMakeFiles/random-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/random/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/random/tests/CMakeFiles/random-test.dir/depend.internal". Scanning dependencies of target random-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 91%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/exponentialdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/exponentialdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tests/exponentialdistribution.cpp [ 91%] Linking CXX executable ../../../../bin/onlinehelp-test cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 /usr/bin/c++ -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/onlinehelp-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a -lpthread /usr/lib/mpich/lib/libmpi.so -fopenmp /usr/lib/libtng_io.so.1.8.2 /usr/lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/liblmfit.so -lpthread /usr/lib/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 91%] Built target onlinehelp-test make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' cd /builddir/build/BUILD/gromacs-2019.6/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/restraint/tests /builddir/build/BUILD/gromacs-2019.6/mpich /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/restraint/tests /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/DependInfo.cmake --color= [ 91%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/invertmatrix.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/invertmatrix.cpp Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/restraint/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend.internal". Scanning dependencies of target restraintpotential-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 91%] Building CXX object src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/manager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/restraint/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/restraint/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/restraintpotential-test.dir/manager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/restraint/tests/manager.cpp [ 91%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/tests/devicetransfers.cpp [ 91%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 91%] Building CXX object src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/restraint/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/restraint/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 91%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/gammadistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tests/gammadistribution.cpp [ 91%] Linking CXX executable ../../../../bin/gpu_utils-test cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 /usr/bin/c++ -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/gpu_utils-test.dir/gputest.cpp.o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gpu_utils-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a -lpthread /usr/lib/mpich/lib/libmpi.so -fopenmp /usr/lib/libtng_io.so.1.8.2 /usr/lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/liblmfit.so -lpthread /usr/lib/mpich/lib/libmpi.so [ 91%] Linking CXX executable ../../../../bin/restraintpotential-test cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 /usr/bin/c++ -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/restraintpotential-test.dir/manager.cpp.o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/restraintpotential-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a -lpthread /usr/lib/mpich/lib/libmpi.so -fopenmp /usr/lib/libtng_io.so.1.8.2 /usr/lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/liblmfit.so -lpthread /usr/lib/mpich/lib/libmpi.so [ 91%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/paddedvector.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/paddedvector.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/paddedvector.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 91%] Built target gpu_utils-test make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' cd /builddir/build/BUILD/gromacs-2019.6/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests /builddir/build/BUILD/gromacs-2019.6/mpich /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/tables/tests /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/tables/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend.internal". Scanning dependencies of target table-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 91%] Building CXX object src/gromacs/tables/tests/CMakeFiles/table-test.dir/splinetable.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/tables/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/table-test.dir/splinetable.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 91%] Built target restraintpotential-test make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' cd /builddir/build/BUILD/gromacs-2019.6/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/tests /builddir/build/BUILD/gromacs-2019.6/mpich /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/taskassignment/tests /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend.internal". 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CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tests/normaldistribution.cpp [ 92%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoption.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/tests/filenameoption.cpp [ 92%] Building CXX object src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 92%] Linking CXX executable ../../../../bin/taskassignment-test cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 /usr/bin/c++ -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/taskassignment-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a -lpthread /usr/lib/mpich/lib/libmpi.so -fopenmp /usr/lib/libtng_io.so.1.8.2 /usr/lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/liblmfit.so -lpthread /usr/lib/mpich/lib/libmpi.so [ 92%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/seed.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/seed.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tests/seed.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp: In member function 'void gmx::test::{anonymous}::SplineTableTest_NumericalInputPmeCorr_Test::TestBody() [with gtest_TypeParam_ = gmx::QuadraticSplineTable]': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:517:16: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 517 | TypeParam pmeCorrTable( {{"NumericalPMECorr", functionValues, derivativeValues, inputSpacing}}, | ^~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp: In member function 'void gmx::test::{anonymous}::SplineTableTest_NumericalInputPmeCorr_Test::TestBody() [with gtest_TypeParam_ = gmx::CubicSplineTable]': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:517:16: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 517 | TypeParam pmeCorrTable( {{"NumericalPMECorr", functionValues, derivativeValues, inputSpacing}}, | ^~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include/gtest/gtest.h:56, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:50: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include/gtest/gtest.h:58, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:50: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp: In member function 'void gmx::test::{anonymous}::SplineTableTest_HandlesIncorrectNumericalInput_Test::TestBody() [with gtest_TypeParam_ = gmx::QuadraticSplineTable]': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:461:22: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 461 | EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.001}}, | ^~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/testutils/testasserts.h:176:5: note: in expansion of macro 'GMX_TEST_THROW_' 176 | GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:461:5: note: in expansion of macro 'EXPECT_THROW_GMX' 461 | EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.001}}, | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:467:22: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 467 | EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.1}}, | ^~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/testutils/testasserts.h:176:5: note: in expansion of macro 'GMX_TEST_THROW_' 176 | GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:467:5: note: in expansion of macro 'EXPECT_THROW_GMX' 467 | EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.1}}, | ^~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include/gtest/gtest.h:56, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:50: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include/gtest/gtest.h:58, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:50: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:489:22: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 489 | EXPECT_THROW_GMX(TypeParam( {{"NumericalBadLJ12", functionValues, badDerivativeValues, spacing}}, | ^~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/testutils/testasserts.h:176:5: note: in expansion of macro 'GMX_TEST_THROW_' 176 | GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:489:5: note: in expansion of macro 'EXPECT_THROW_GMX' 489 | EXPECT_THROW_GMX(TypeParam( {{"NumericalBadLJ12", functionValues, badDerivativeValues, spacing}}, | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:494:22: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 494 | EXPECT_THROW_GMX(TypeParam( {{"NumericalLJ12", functionValues, derivativeValues, spacing}}, | ^~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/testutils/testasserts.h:176:5: note: in expansion of macro 'GMX_TEST_THROW_' 176 | GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:494:5: note: in expansion of macro 'EXPECT_THROW_GMX' 494 | EXPECT_THROW_GMX(TypeParam( {{"NumericalLJ12", functionValues, derivativeValues, spacing}}, | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp: In member function 'void gmx::test::{anonymous}::SplineTableTest_HandlesIncorrectNumericalInput_Test::TestBody() [with gtest_TypeParam_ = gmx::CubicSplineTable]': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:461:22: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 461 | EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.001}}, | ^~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/testutils/testasserts.h:176:5: note: in expansion of macro 'GMX_TEST_THROW_' 176 | GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:461:5: note: in expansion of macro 'EXPECT_THROW_GMX' 461 | EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.001}}, | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:467:22: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 467 | EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.1}}, | ^~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/testutils/testasserts.h:176:5: note: in expansion of macro 'GMX_TEST_THROW_' 176 | GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:467:5: note: in expansion of macro 'EXPECT_THROW_GMX' 467 | EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.1}}, | ^~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include/gtest/gtest.h:56, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:50: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include/gtest/gtest.h:58, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:50: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:489:22: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 489 | EXPECT_THROW_GMX(TypeParam( {{"NumericalBadLJ12", functionValues, badDerivativeValues, spacing}}, | ^~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/testutils/testasserts.h:176:5: note: in expansion of macro 'GMX_TEST_THROW_' 176 | GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:489:5: note: in expansion of macro 'EXPECT_THROW_GMX' 489 | EXPECT_THROW_GMX(TypeParam( {{"NumericalBadLJ12", functionValues, badDerivativeValues, spacing}}, | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:494:22: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 494 | EXPECT_THROW_GMX(TypeParam( {{"NumericalLJ12", functionValues, derivativeValues, spacing}}, | ^~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/testutils/testasserts.h:176:5: note: in expansion of macro 'GMX_TEST_THROW_' 176 | GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:494:5: note: in expansion of macro 'EXPECT_THROW_GMX' 494 | EXPECT_THROW_GMX(TypeParam( {{"NumericalLJ12", functionValues, derivativeValues, spacing}}, | ^~~~~~~~~~~~~~~~ make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 92%] Built target taskassignment-test make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' cd /builddir/build/BUILD/gromacs-2019.6/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2019.6/mpich /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/utility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend.internal". Scanning dependencies of target utility-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 92%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator-mpi.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator-mpi.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests/physicalnodecommunicator-mpi.cpp [ 92%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/options/tests && /usr/bin/c++ 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-g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tests/tabulatednormaldistribution.cpp In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/paddedvector.cpp:59: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/testarrayrefs.h: In function 'void gmx::test::fillInputContents(gmx::ArrayRef >, int) [with T = double]': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/testarrayrefs.h:70:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 70 | void fillInputContents(ArrayRef < BasicVector < T>> inputRef, | ^~~~~~~~~~~~~~~~~ [ 93%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 93%] Linking CXX executable ../../../../bin/utility-mpi-test cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator-mpi.cpp.o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a -lpthread /usr/lib/mpich/lib/libmpi.so -fopenmp /usr/lib/libtng_io.so.1.8.2 /usr/lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/liblmfit.so -lpthread /usr/lib/mpich/lib/libmpi.so In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include/gtest/gtest.h:56, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tests/tabulatednormaldistribution.cpp:45: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/paddedvector.cpp:47: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 93%] Built target utility-mpi-test make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' cd /builddir/build/BUILD/gromacs-2019.6/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2019.6/mpich /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/utility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend.internal". In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/paddedvector.cpp:47: /usr/include/c++/9/bits/stl_vector.h: In function 'void gmx::test::fillInput(PaddedVectorOfT*, int) [with PaddedVectorOfT = gmx::PaddedVector >]': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ Scanning dependencies of target utility-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 94%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/alignedallocator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests/alignedallocator.cpp /usr/include/c++/9/bits/vector.tcc: In member function 'virtual void gmx::{anonymous}::TabulatedNormalDistributionTest_OutputDouble14_Test::TestBody()': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/paddedvector.cpp:47: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = gmx::BasicVector; _Alloc = gmx::Allocator, gmx::AlignedAllocationPolicy>]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/paddedvector.cpp:47: /usr/include/c++/9/bits/stl_vector.h: In function 'void gmx::test::fillInput(PaddedVectorOfT*, int) [with PaddedVectorOfT = gmx::PaddedVector, gmx::Allocator, gmx::AlignedAllocationPolicy> >]': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ [ 94%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/threefry.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/threefry.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tests/threefry.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/paddedvector.cpp:47: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = gmx::Allocator]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/paddedvector.cpp:47: /usr/include/c++/9/bits/stl_vector.h: In function 'void gmx::test::fillInput(PaddedVectorOfT*, int) [with PaddedVectorOfT = gmx::PaddedVector >]': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/paddedvector.cpp:47: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = gmx::BasicVector; _Alloc = std::allocator >]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ [ 94%] Building CXX object src/gromacs/tables/tests/CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/tables/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/paddedvector.cpp:47: /usr/include/c++/9/bits/stl_vector.h: In function 'void gmx::test::fillInput(PaddedVectorOfT*, int) [with PaddedVectorOfT = gmx::PaddedVector, std::allocator > >]': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ [ 94%] Linking CXX executable ../../../../bin/table-test cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 /usr/bin/c++ -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/table-test.dir/splinetable.cpp.o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/table-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a -lpthread /usr/lib/mpich/lib/libmpi.so -fopenmp /usr/lib/libtng_io.so.1.8.2 /usr/lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/liblmfit.so -lpthread /usr/lib/mpich/lib/libmpi.so In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/paddedvector.cpp:59: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/testarrayrefs.h: In function 'void gmx::test::compareViews(gmx::ArrayRef, gmx::ArrayRef) [with T = double]': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/testarrayrefs.h:97:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 97 | void compareViews(ArrayRef input, | ^~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/testarrayrefs.h:97:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/testarrayrefs.h: In function 'void gmx::test::compareViews(gmx::ArrayRef >, gmx::ArrayRef >) [with T = double]': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/testarrayrefs.h:109:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 109 | void compareViews(ArrayRef < BasicVector < T>> input, | ^~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/testarrayrefs.h:109:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 [ 94%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/option.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/option.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/tests/option.cpp In file included from /usr/include/c++/9/vector:67, from /usr/include/c++/9/bits/random.h:34, from /usr/include/c++/9/random:49, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/seed.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/threefry.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tests/threefry.cpp:43: /usr/include/c++/9/bits/stl_vector.h: In constructor 'std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/include/c++/9/bits/stl_vector.h:622:7: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 622 | vector(initializer_list __l, | ^~~~~~ make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 94%] Built target table-test make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' cd /builddir/build/BUILD/gromacs-2019.6/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/tests /builddir/build/BUILD/gromacs-2019.6/mpich /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/fileio/tests /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/fileio/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend.internal". Scanning dependencies of target fileio-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 94%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/confio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/confio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/tests/confio.cpp [ 94%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/optionsassigner.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/tests/optionsassigner.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tests/threefry.cpp: In function 'void __static_initialization_and_destruction_0(int, int)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tests/threefry.cpp:119:40: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 119 | }}; | ^ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tests/threefry.cpp:131:39: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 131 | }}; | ^ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tests/threefry.cpp:142:38: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 142 | }}; | ^ [ 94%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/vectypes.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/vectypes.cpp [ 94%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/filemd5.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/filemd5.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/tests/filemd5.cpp [ 94%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/uniformintdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tests/uniformintdistribution.cpp [ 94%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/arrayref.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests/arrayref.cpp [ 94%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/readinp.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/tests/readinp.cpp [ 94%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tests/uniformrealdistribution.cpp [ 94%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 94%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/tngio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/tngio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/tests/tngio.cpp [ 94%] Linking CXX executable ../../../../bin/math-test cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 /usr/bin/c++ -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o CMakeFiles/math-test.dir/dofit.cpp.o CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/paddedvector.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a -lpthread /usr/lib/mpich/lib/libmpi.so -fopenmp /usr/lib/libtng_io.so.1.8.2 /usr/lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/liblmfit.so -lpthread /usr/lib/mpich/lib/libmpi.so [ 94%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 94%] Built target math-test make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' cd /builddir/build/BUILD/gromacs-2019.6/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 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Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/pulling/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend.internal". Scanning dependencies of target pull-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 94%] Building CXX object src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/pull.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/pulling/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/pull-test.dir/pull.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/tests/pull.cpp [ 94%] Linking CXX executable ../../../../bin/fileio-test cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/fileio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileio-test.dir/link.txt --verbose=1 /usr/bin/c++ -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/fileio-test.dir/confio.cpp.o CMakeFiles/fileio-test.dir/filemd5.cpp.o CMakeFiles/fileio-test.dir/readinp.cpp.o CMakeFiles/fileio-test.dir/tngio.cpp.o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fileio-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a -lpthread /usr/lib/mpich/lib/libmpi.so -fopenmp /usr/lib/libtng_io.so.1.8.2 /usr/lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/liblmfit.so -lpthread /usr/lib/mpich/lib/libmpi.so [ 94%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 94%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/repeatingsection.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/tests/repeatingsection.cpp [ 94%] Linking CXX executable ../../../../bin/random-test cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 /usr/bin/c++ -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/random-test.dir/exponentialdistribution.cpp.o CMakeFiles/random-test.dir/gammadistribution.cpp.o CMakeFiles/random-test.dir/normaldistribution.cpp.o CMakeFiles/random-test.dir/seed.cpp.o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o CMakeFiles/random-test.dir/threefry.cpp.o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/random-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a -lpthread /usr/lib/mpich/lib/libmpi.so -fopenmp /usr/lib/libtng_io.so.1.8.2 /usr/lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/liblmfit.so -lpthread /usr/lib/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 94%] Built target fileio-test [ 94%] Building CXX object src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/pulling/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' cd /builddir/build/BUILD/gromacs-2019.6/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/tests /builddir/build/BUILD/gromacs-2019.6/mpich /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/awh/tests /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/awh/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend.internal". Scanning dependencies of target awh-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 94%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/bias.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/bias.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/tests/bias.cpp [ 94%] Linking CXX executable ../../../../bin/pull-test cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 /usr/bin/c++ -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/pull-test.dir/pull.cpp.o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pull-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a -lpthread /usr/lib/mpich/lib/libmpi.so -fopenmp /usr/lib/libtng_io.so.1.8.2 /usr/lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/liblmfit.so -lpthread /usr/lib/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 94%] Built target random-test make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' cd /builddir/build/BUILD/gromacs-2019.6/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/tests /builddir/build/BUILD/gromacs-2019.6/mpich /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/simd/tests /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/simd/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend.internal". Scanning dependencies of target simd-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 94%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/tests/bootstrap_loadstore.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 94%] Built target pull-test [ 94%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/base.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/base.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/tests/base.cpp [ 94%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/tests/simd.cpp [ 94%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/biasstate.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/tests/biasstate.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/tests/bias.cpp:37: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double&, double&, double&}; _Tp = gmx::DimParams; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In function 'gmx::test::AwhTestParameters gmx::test::getAwhTestParameters(int, int)': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/tests/bias.cpp:37: /usr/include/c++/9/bits/stl_vector.h: In member function 'virtual void gmx::test::BiasTest_ForcesBiasPmf_Test::TestBody()': /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ [ 95%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/tests/simd_floatingpoint.cpp [ 95%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/tests/simd_floatingpoint_util.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.h:57, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/tests/biasstate.cpp:37: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double, double, double&}; _Tp = gmx::DimParams; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double, double, double&}; _Tp = gmx::DimParams; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ [ 95%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/timeunitmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/tests/timeunitmanager.cpp [ 95%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/tests/simd_vector_operations.cpp [ 95%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/grid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/grid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/tests/grid.cpp [ 95%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_math.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_math.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/tests/simd_math.cpp [ 95%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 95%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_memory.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/tests/simd_memory.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/dimparams.h:52, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/grid.h:60, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/tests/grid.cpp:37: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const float&, double, const float&}; _Tp = gmx::DimParams; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const float&, double, const float&}; _Tp = gmx::DimParams; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ [ 95%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_integer.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_integer.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/tests/simd_integer.cpp [ 95%] Linking CXX executable ../../../../bin/awh-test cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 /usr/bin/c++ -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/awh-test.dir/bias.cpp.o CMakeFiles/awh-test.dir/biasstate.cpp.o CMakeFiles/awh-test.dir/grid.cpp.o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/awh-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a -lpthread /usr/lib/mpich/lib/libmpi.so -fopenmp /usr/lib/libtng_io.so.1.8.2 /usr/lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/liblmfit.so -lpthread /usr/lib/mpich/lib/libmpi.so [ 95%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/treesupport.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/tests/treesupport.cpp [ 95%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/tests/simd4.cpp [ 95%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/tests/simd4_floatingpoint.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 95%] Built target awh-test [ 95%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/tests/simd4_vector_operations.cpp [ 96%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_math.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4_math.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/tests/simd4_math.cpp [ 96%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/scalar.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/tests/scalar.cpp [ 96%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_util.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/scalar_util.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/tests/scalar_util.cpp [ 96%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_math.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/scalar_math.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/tests/scalar_math.cpp [ 96%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 96%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask32.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests/bitmask32.cpp [ 96%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask64.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests/bitmask64.cpp [ 96%] Linking CXX executable ../../../../bin/simd-test cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/simd/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/simd-test.dir/link.txt --verbose=1 /usr/bin/c++ -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o CMakeFiles/simd-test.dir/base.cpp.o CMakeFiles/simd-test.dir/simd.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd_math.cpp.o CMakeFiles/simd-test.dir/simd_memory.cpp.o CMakeFiles/simd-test.dir/simd_integer.cpp.o CMakeFiles/simd-test.dir/simd4.cpp.o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd4_math.cpp.o CMakeFiles/simd-test.dir/scalar.cpp.o CMakeFiles/simd-test.dir/scalar_util.cpp.o CMakeFiles/simd-test.dir/scalar_math.cpp.o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/simd-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a -lpthread /usr/lib/mpich/lib/libmpi.so -fopenmp /usr/lib/libtng_io.so.1.8.2 /usr/lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/liblmfit.so -lpthread /usr/lib/mpich/lib/libmpi.so [ 97%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 97%] Built target simd-test [ 97%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask128.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests/bitmask128.cpp [ 97%] Linking CXX executable ../../../../bin/options-test cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/options/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/options-test.dir/link.txt --verbose=1 /usr/bin/c++ -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o CMakeFiles/options-test.dir/filenameoption.cpp.o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o CMakeFiles/options-test.dir/option.cpp.o CMakeFiles/options-test.dir/optionsassigner.cpp.o CMakeFiles/options-test.dir/repeatingsection.cpp.o CMakeFiles/options-test.dir/timeunitmanager.cpp.o CMakeFiles/options-test.dir/treesupport.cpp.o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/options-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a -lpthread /usr/lib/mpich/lib/libmpi.so -fopenmp /usr/lib/libtng_io.so.1.8.2 /usr/lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/liblmfit.so -lpthread /usr/lib/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 97%] Built target options-test [ 97%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o cd 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-mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests/keyvaluetreeserializer.cpp [ 97%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests/keyvaluetreetransform.cpp [ 97%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/gmxregex.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/gmxregex.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests/gmxregex.cpp [ 97%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/logger.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/logger.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests/logger.cpp [ 98%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/mutex.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/mutex.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests/mutex.cpp [ 98%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/path.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/path.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests/path.cpp [ 98%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests/physicalnodecommunicator.cpp [ 98%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/stringutil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/stringutil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests/stringutil.cpp [ 98%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/textreader.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/textreader.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests/textreader.cpp [ 98%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/textwriter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/textwriter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests/textwriter.cpp [ 98%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/typetraits.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/typetraits.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests/typetraits.cpp [ 98%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [100%] Linking CXX executable ../../../../bin/utility-test cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-test.dir/link.txt --verbose=1 /usr/bin/c++ -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/utility-test.dir/alignedallocator.cpp.o CMakeFiles/utility-test.dir/arrayref.cpp.o CMakeFiles/utility-test.dir/bitmask32.cpp.o CMakeFiles/utility-test.dir/bitmask64.cpp.o CMakeFiles/utility-test.dir/bitmask128.cpp.o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o CMakeFiles/utility-test.dir/gmxregex.cpp.o CMakeFiles/utility-test.dir/logger.cpp.o CMakeFiles/utility-test.dir/mutex.cpp.o CMakeFiles/utility-test.dir/path.cpp.o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o CMakeFiles/utility-test.dir/stringutil.cpp.o CMakeFiles/utility-test.dir/textreader.cpp.o CMakeFiles/utility-test.dir/textwriter.cpp.o CMakeFiles/utility-test.dir/typetraits.cpp.o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a -lpthread /usr/lib/mpich/lib/libmpi.so -fopenmp /usr/lib/libtng_io.so.1.8.2 /usr/lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/liblmfit.so -lpthread /usr/lib/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [100%] Built target utility-test make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' cd /builddir/build/BUILD/gromacs-2019.6/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/mpich /builddir/build/BUILD/gromacs-2019.6/mpich /builddir/build/BUILD/gromacs-2019.6/mpich/CMakeFiles/tests.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/CMakeFiles/tests.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/CMakeFiles/tests.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/CMakeFiles/tests.dir/depend.internal". Scanning dependencies of target tests make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[3]: Nothing to be done for 'CMakeFiles/tests.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [100%] Built target tests make -f CMakeFiles/run-ctest-nophys.dir/build.make CMakeFiles/run-ctest-nophys.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' cd /builddir/build/BUILD/gromacs-2019.6/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/mpich /builddir/build/BUILD/gromacs-2019.6/mpich /builddir/build/BUILD/gromacs-2019.6/mpich/CMakeFiles/run-ctest-nophys.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/CMakeFiles/run-ctest-nophys.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/CMakeFiles/run-ctest-nophys.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/CMakeFiles/run-ctest-nophys.dir/depend.internal". Scanning dependencies of target run-ctest-nophys make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make -f CMakeFiles/run-ctest-nophys.dir/build.make CMakeFiles/run-ctest-nophys.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [100%] Running all tests except physical validation /usr/bin/ctest --output-on-failure -E physicalvalidationtests Test project /builddir/build/BUILD/gromacs-2019.6/mpich Start 1: TestUtilsUnitTests 1/27 Test #1: TestUtilsUnitTests ............... Passed 0.06 sec Start 2: TestUtilsMpiUnitTests 2/27 Test #2: TestUtilsMpiUnitTests ............ Passed 0.05 sec Start 3: MdlibUnitTest 3/27 Test #3: MdlibUnitTest .................... Passed 0.03 sec Start 4: AppliedForcesUnitTest 4/27 Test #4: AppliedForcesUnitTest ............ Passed 0.02 sec Start 5: ListedForcesTest 5/27 Test #5: ListedForcesTest ................. Passed 0.03 sec Start 6: CommandLineUnitTests 6/27 Test #6: CommandLineUnitTests ............. Passed 0.04 sec Start 7: DomDecTests 7/27 Test #7: DomDecTests ...................... Passed 0.02 sec Start 8: EwaldUnitTests 8/27 Test #8: EwaldUnitTests ................... Passed 0.36 sec Start 9: FFTUnitTests 9/27 Test #9: FFTUnitTests ..................... Passed 0.05 sec Start 10: GpuUtilsUnitTests 10/27 Test #10: GpuUtilsUnitTests ................ Passed 0.03 sec Start 11: HardwareUnitTests 11/27 Test #11: HardwareUnitTests ................ Passed 0.06 sec Start 12: MathUnitTests 12/27 Test #12: MathUnitTests .................... Passed 0.03 sec Start 13: MdrunUtilityUnitTests 13/27 Test #13: MdrunUtilityUnitTests ............ Passed 0.03 sec Start 14: MdrunUtilityMpiUnitTests 14/27 Test #14: MdrunUtilityMpiUnitTests ......... Passed 0.05 sec Start 15: OnlineHelpUnitTests 15/27 Test #15: OnlineHelpUnitTests .............. Passed 0.03 sec Start 16: OptionsUnitTests 16/27 Test #16: OptionsUnitTests ................. Passed 0.03 sec Start 17: RandomUnitTests 17/27 Test #17: RandomUnitTests .................. Passed 0.04 sec Start 18: RestraintTests 18/27 Test #18: RestraintTests ................... Passed 0.02 sec Start 19: TableUnitTests 19/27 Test #19: TableUnitTests ................... Passed 0.18 sec Start 20: TaskAssignmentUnitTests 20/27 Test #20: TaskAssignmentUnitTests .......... Passed 0.02 sec Start 21: UtilityUnitTests 21/27 Test #21: UtilityUnitTests ................. Passed 0.05 sec Start 22: UtilityMpiUnitTests 22/27 Test #22: UtilityMpiUnitTests .............. Passed 0.04 sec Start 23: FileIOTests 23/27 Test #23: FileIOTests ...................... Passed 0.03 sec Start 24: PullTest 24/27 Test #24: PullTest ......................... Passed 0.02 sec Start 25: AwhTest 25/27 Test #25: AwhTest .......................... Passed 0.03 sec Start 26: SimdUnitTests 26/27 Test #26: SimdUnitTests .................... Passed 0.03 sec Start 27: CompatibilityHelpersTests 27/27 Test #27: CompatibilityHelpersTests ........ Passed 0.02 sec 100% tests passed, 0 tests failed out of 27 Label Time Summary: GTest = 1.40 sec*proc (27 tests) MpiTest = 0.14 sec*proc (3 tests) UnitTest = 1.40 sec*proc (27 tests) Total Test time (real) = 1.45 sec make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [100%] Built target run-ctest-nophys make -f tests/CMakeFiles/missing-tests-notice.dir/build.make tests/CMakeFiles/missing-tests-notice.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' cd /builddir/build/BUILD/gromacs-2019.6/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/tests /builddir/build/BUILD/gromacs-2019.6/mpich /builddir/build/BUILD/gromacs-2019.6/mpich/tests /builddir/build/BUILD/gromacs-2019.6/mpich/tests/CMakeFiles/missing-tests-notice.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/tests/CMakeFiles/missing-tests-notice.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/tests/CMakeFiles/missing-tests-notice.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/tests/CMakeFiles/missing-tests-notice.dir/depend.internal". Scanning dependencies of target missing-tests-notice make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make -f tests/CMakeFiles/missing-tests-notice.dir/build.make tests/CMakeFiles/missing-tests-notice.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [100%] Some tests not available cd /builddir/build/BUILD/gromacs-2019.6/mpich/tests && /usr/bin/cmake -E echo "NOTE: Regression tests have not been run. If you want to run them from the build system, get the correct version of the regression tests package and set REGRESSIONTEST_PATH in CMake to point to it, or set REGRESSIONTEST_DOWNLOAD=ON." NOTE: Regression tests have not been run. If you want to run them from the build system, get the correct version of the regression tests package and set REGRESSIONTEST_PATH in CMake to point to it, or set REGRESSIONTEST_DOWNLOAD=ON. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [100%] Built target missing-tests-notice make -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' cd /builddir/build/BUILD/gromacs-2019.6/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/mpich /builddir/build/BUILD/gromacs-2019.6/mpich /builddir/build/BUILD/gromacs-2019.6/mpich/CMakeFiles/check.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/CMakeFiles/check.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/CMakeFiles/check.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/CMakeFiles/check.dir/depend.internal". Scanning dependencies of target check make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[3]: Nothing to be done for 'CMakeFiles/check.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [100%] Built target check make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019.6/mpich/CMakeFiles 0 make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' + test -n mpich + module unload mpi/mpich-arm ++ /usr/share/lmod/lmod/libexec/lmod sh unload mpi/mpich-arm + eval unset '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' unset 'LD_LIBRARY_PATH;' unset '__LMOD_REF_COUNT_LOADEDMODULES;' unset 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' unset 'MPI_BIN;' unset 'MPI_COMPILER;' unset 'MPI_FORTRAN_MOD_DIR;' unset 'MPI_HOME;' unset 'MPI_INCLUDE;' unset 'MPI_LIB;' unset 'MPI_MAN;' unset 'MPI_PYTHON2_SITEARCH;' unset 'MPI_PYTHON3_SITEARCH;' unset 'MPI_PYTHON_SITEARCH;' unset 'MPI_SUFFIX;' unset 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=:/usr/lib/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' unset '__LMOD_REF_COUNT__LMFILES_;' unset '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0=;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ unset __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ unset LD_LIBRARY_PATH ++ unset __LMOD_REF_COUNT_LOADEDMODULES ++ unset LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1 ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ unset MPI_BIN ++ unset MPI_COMPILER ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset MPI_INCLUDE ++ unset MPI_LIB ++ unset MPI_MAN ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_PYTHON_SITEARCH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=:/usr/lib/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset __LMOD_REF_COUNT__LMFILES_ ++ unset _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0= ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + for mpi in '' mpich openmpi + test openmpi = openmpi + continue + for p in '' _d + for mpi in '' mpich openmpi + test '' = openmpi + test -n '' + test -n '' + xLD_LIBRARY_PATH=/builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/lib + LD_LIBRARY_PATH=/builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/lib + make -C serial_d VERBOSE=1 -j5 check make: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2019.6 -B/builddir/build/BUILD/gromacs-2019.6/serial_d --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 check make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2019.6 -B/builddir/build/BUILD/gromacs-2019.6/serial_d --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019.6/serial_d/CMakeFiles 97 make -f CMakeFiles/Makefile2 CMakeFiles/check.dir/all make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/depend make -f src/external/googletest/CMakeFiles/gmock.dir/build.make src/external/googletest/CMakeFiles/gmock.dir/depend make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/external/googletest /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/src/external/googletest /builddir/build/BUILD/gromacs-2019.6/serial_d/src/external/googletest/CMakeFiles/gmock.dir/DependInfo.cmake --color= make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/programs /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/DependInfo.cmake --color= make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/external/googletest/CMakeFiles/gmock.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/external/googletest/CMakeFiles/gmock.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/external/googletest/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/external/googletest/CMakeFiles/gmock.dir/depend.internal". make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[3]: Nothing to be done for 'src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_external.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 0%] Built target mdrun_objlib Scanning dependencies of target gmock make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend make -f src/external/googletest/CMakeFiles/gmock.dir/build.make src/external/googletest/CMakeFiles/gmock.dir/build [ 0%] Built target mdrun_test_objlib make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake --color= [ 3%] Built target libgromacs_external make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 3%] Building CXX object src/external/googletest/CMakeFiles/gmock.dir/googlemock/src/gmock-all.cc.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/tests /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/analysisdata/tests /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/DependInfo.cmake --color= cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/external/googletest && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -D_GNU_SOURCE=1 -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmock.dir/googlemock/src/gmock-all.cc.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/src/gmock-all.cc Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/onlinehelp/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/mdrunutility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/analysisdata/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/depend.internal". Scanning dependencies of target onlinehelp-test-shared make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build Scanning dependencies of target mdrunutility-test-shared make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_generated.dir/build'. make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' Scanning dependencies of target analysisdata-test-shared make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 4%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o [ 16%] Built target libgromacs_generated make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/tests/mock_helptopic.cpp [ 16%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrunutility/tests/threadaffinitytest.cpp make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 16%] Building CXX object src/external/googletest/CMakeFiles/gmock.dir/googletest/src/gtest-all.cc.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/external/googletest && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -D_GNU_SOURCE=1 -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast 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src/testutils/CMakeFiles/testutils.dir/stdiohelper.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops 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CMakeFiles/testutils.dir/testfilemanager.cpp.o CMakeFiles/testutils.dir/testfileredirector.cpp.o CMakeFiles/testutils.dir/testinit.cpp.o CMakeFiles/testutils.dir/testmatchers.cpp.o CMakeFiles/testutils.dir/testoptions.cpp.o CMakeFiles/testutils.dir/textblockmatchers.cpp.o CMakeFiles/testutils.dir/xvgtest.cpp.o CMakeFiles/testutils.dir/__/external/tinyxml2/tinyxml2.cpp.o /usr/bin/ranlib ../../lib/libtestutils.a make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 78%] Built target testutils make -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/depend make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/depend make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make 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Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/testutils/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/applied-forces/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/testutils/tests/CMakeFiles/testutils-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/testutils/tests/CMakeFiles/testutils-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/mdlib/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/testutils/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/testutils/tests/CMakeFiles/testutils-test.dir/depend.internal". Scanning dependencies of target testutils-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' Scanning dependencies of target applied-forces-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build Scanning dependencies of target testutils-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 78%] Building CXX object src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o Scanning dependencies of target mdrun-mpi-test make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/tests/mpitest.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build Scanning dependencies of target mdlib-test make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 78%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/interactivetest.cpp.o [ 78%] Building CXX object src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/electricfield.cpp.o make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/applied-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/applied-forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/applied-forces-test.dir/electricfield.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/applied-forces/tests/electricfield.cpp cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/interactivetest.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/tests/interactivetest.cpp make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 78%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 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CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests/domain_decomposition.cpp [ 78%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/tests/calc_verletbuf.cpp [ 78%] Building CXX object src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 78%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/minimize.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/minimize.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests/minimize.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include/gtest/gtest.h:56, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/applied-forces/tests/electricfield.cpp:46: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = gmx::BasicVector; _Alloc = gmx::Allocator, gmx::AlignedAllocationPolicy>]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ [ 78%] Linking CXX executable ../../../bin/testutils-mpi-test cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-mpi-test ../../../lib/libtestutils.a ../../../lib/libgromacs_d.so.4.0.0 ../../../lib/libgmock.a -lpthread -fopenmp -lm [ 78%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/mdebin.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/mdebin.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/tests/mdebin.cpp In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include/gtest/gtest.h:56, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/applied-forces/tests/electricfield.cpp:46: /usr/include/c++/9/bits/stl_vector.h: In function 'void {anonymous}::ElectricFieldTest::test(int, real, real, real, real, real)': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 78%] Built target testutils-mpi-test [ 78%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/refdata_tests.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/tests/refdata_tests.cpp make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/tests /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/listed-forces/tests /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/listed-forces/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/depend.internal". Scanning dependencies of target listed-forces-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 78%] Building CXX object src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/bonded.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/listed-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/listed-forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/listed-forces-test.dir/bonded.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/tests/bonded.cpp [ 78%] Building CXX object src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/applied-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/applied-forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 78%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settle.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/tests/settle.cpp [ 78%] Linking CXX executable ../../../../bin/applied-forces-test cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/applied-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied-forces-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/applied-forces-test.dir/electricfield.cpp.o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/applied-forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm [ 78%] Building CXX object src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/listed-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/listed-forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 78%] Built target applied-forces-test make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/tests /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/commandline/tests /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/commandline/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend.internal". Scanning dependencies of target commandline-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 78%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/tests/cmdlinehelpmodule.cpp [ 78%] Linking CXX executable ../../../../bin/listed-forces-test cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/listed-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/listed-forces-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/listed-forces-test.dir/bonded.cpp.o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/listed-forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 78%] Built target listed-forces-test make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/tests /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/domdec/tests /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/domdec/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend.internal". Scanning dependencies of target domdec-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 78%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/hashedmap.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/domdec/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/hashedmap.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/tests/hashedmap.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/idef.h:43, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/settle.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/tests/settle.cpp:37: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const t_iparams&}; _Tp = t_iparams; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/idef.h:43, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/settle.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/tests/settle.cpp:37: /usr/include/c++/9/bits/stl_vector.h: In member function 'virtual void gmx::test::SettleTest_SatisfiesConstraints_Test::TestBody()': /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ [ 78%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests/mimic.cpp [ 78%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/domdec/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/tests/localatomsetmanager.cpp [ 78%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp [ 78%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/multisim.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/multisim.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests/multisim.cpp [ 78%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/shake.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/tests/shake.cpp [ 78%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/tests/testasserts_tests.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/block.h:42, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/shake.h:48, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/tests/shake.cpp:37: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ [ 78%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/domdec/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 78%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp [ 78%] Linking CXX executable ../../../../bin/domdec-test cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/domdec-test.dir/hashedmap.cpp.o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/domdec-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm [ 78%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/multisimtest.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/multisimtest.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests/multisimtest.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 78%] Built target domdec-test make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/tests /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/ewald/tests /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/ewald/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend.internal". Scanning dependencies of target ewald-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 78%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/tests/pmebsplinetest.cpp [ 78%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/tests/simulationsignal.cpp [ 79%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/tests/xvgtest_tests.cpp [ 79%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/pmetest.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/pmetest.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests/pmetest.cpp [ 79%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 79%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/updategroups.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/updategroups.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/tests/updategroups.cpp [ 79%] Linking CXX executable ../../../bin/testutils-test cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test ../../../lib/libtestutils.a ../../../lib/libgromacs_d.so.4.0.0 ../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 79%] Built target testutils-test [ 79%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmegathertest.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/tests/pmegathertest.cpp [ 79%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/replicaexchange.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/replicaexchange.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests/replicaexchange.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/updategroups.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/tests/updategroups.cpp:44: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const t_iparams&}; _Tp = t_iparams; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/updategroups.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/tests/updategroups.cpp:44: /usr/include/c++/9/bits/stl_vector.h: In member function 'virtual void gmx::{anonymous}::UpdateGroups_butaneUA_Test::TestBody()': /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ [ 79%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/tests/pmesolvetest.cpp /usr/include/c++/9/bits/stl_vector.h: In member function 'virtual void gmx::{anonymous}::UpdateGroups_ethaneUA_Test::TestBody()': /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h: In member function 'virtual void gmx::{anonymous}::UpdateGroups_methane_Test::TestBody()': /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h: In member function 'virtual void gmx::{anonymous}::UpdateGroups_ethane_Test::TestBody()': /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h: In member function 'virtual void gmx::{anonymous}::UpdateGroups_waterThreeSite_Test::TestBody()': /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h: In member function 'virtual void gmx::{anonymous}::UpdateGroups_waterFourSite_Test::TestBody()': /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h: In member function 'virtual void gmx::{anonymous}::UpdateGroups_waterFlexAngle_Test::TestBody()': /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ [ 79%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/tests/cmdlinemodulemanagertest.cpp /usr/include/c++/9/bits/stl_vector.h: In member function 'virtual void gmx::{anonymous}::UpdateGroups_twoMoltypes_Test::TestBody()': /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ [ 79%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/tests/updategroupscog.cpp [ 79%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include/gtest/internal/gtest-port.h:279, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include/gtest/internal/gtest-linked_ptr.h:74, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include/gmock/internal/gmock-port.h:53, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include/gmock/internal/gmock-generated-internal-utils.h:44, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include/gmock/internal/gmock-internal-utils.h:45, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include/gmock/gmock-actions.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include/gmock/gmock.h:58, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/tests/pmegathertest.cpp:47: /usr/include/c++/9/bits/stl_vector.h: In constructor 'std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/stl_vector.h:622:7: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 622 | vector(initializer_list __l, | ^~~~~~ In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/updategroupscog.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/tests/updategroupscog.cpp:37: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const t_iparams&}; _Tp = t_iparams; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ [ 79%] Linking CXX executable ../../../../bin/mdrun-mpi-test cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o CMakeFiles/mdrun-mpi-test.dir/minimize.cpp.o CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o CMakeFiles/mdrun-mpi-test.dir/multisim.cpp.o CMakeFiles/mdrun-mpi-test.dir/multisimtest.cpp.o CMakeFiles/mdrun-mpi-test.dir/pmetest.cpp.o CMakeFiles/mdrun-mpi-test.dir/replicaexchange.cpp.o CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrun_test_objlib.dir/energyreader.cpp.o CMakeFiles/mdrun_test_objlib.dir/energycomparison.cpp.o CMakeFiles/mdrun_test_objlib.dir/moduletest.cpp.o CMakeFiles/mdrun_test_objlib.dir/simulationdatabase.cpp.o CMakeFiles/mdrun_test_objlib.dir/terminationhelper.cpp.o CMakeFiles/mdrun_test_objlib.dir/trajectorycomparison.cpp.o CMakeFiles/mdrun_test_objlib.dir/trajectoryreader.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -o ../../../../bin/mdrun-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/updategroupscog.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/tests/updategroupscog.cpp:37: /usr/include/c++/9/bits/stl_vector.h: In member function 'virtual void gmx::{anonymous}::UpdateGroupsCog_ComputesCogs_Test::TestBody()': /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/tests/updategroupscog.cpp:173:28: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 173 | updateGroupsCog.addCogs(globalAtomIndices, positions); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/tests/updategroupscog.cpp:173:28: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include/gtest/internal/gtest-port.h:279, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include/gtest/internal/gtest-linked_ptr.h:74, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include/gmock/internal/gmock-port.h:53, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include/gmock/internal/gmock-generated-internal-utils.h:44, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include/gmock/internal/gmock-internal-utils.h:45, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include/gmock/gmock-actions.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include/gmock/gmock.h:58, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/tests/pmegathertest.cpp:47: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = gmx::BasicVector; _Alloc = std::allocator >]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include/gtest/internal/gtest-port.h:279, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include/gtest/internal/gtest-linked_ptr.h:74, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include/gmock/internal/gmock-port.h:53, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include/gmock/internal/gmock-generated-internal-utils.h:44, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include/gmock/internal/gmock-internal-utils.h:45, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include/gmock/gmock-actions.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include/gmock/gmock.h:58, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/tests/pmegathertest.cpp:47: /usr/include/c++/9/bits/stl_vector.h: In static member function 'static void gmx::test::{anonymous}::PmeGatherTest::SetUpTestCase()': /usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 957 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 79%] Built target mdrun-mpi-test make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fft/tests /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/fft/tests /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/fft/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend.internal". Scanning dependencies of target fft-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 79%] Building CXX object src/gromacs/fft/tests/CMakeFiles/fft-test.dir/fft.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/fft/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fft-test.dir/fft.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fft/tests/fft.cpp [ 80%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/tests/pmegathertest.cpp: In function 'void __static_initialization_and_destruction_0(int, int)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/tests/pmegathertest.cpp:97:1: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 97 | }; | ^ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/tests/pmegathertest.cpp:165:1: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 165 | }; | ^ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/tests/pmegathertest.cpp:174:1: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 174 | }; | ^ [ 80%] Linking CXX executable ../../../../bin/mdlib-test cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/mdebin.cpp.o CMakeFiles/mdlib-test.dir/settle.cpp.o CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/updategroups.cpp.o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdlib-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 80%] Built target mdlib-test make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/tests /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/gpu_utils/tests /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/gpu_utils/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend.internal". Scanning dependencies of target gpu_utils-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 80%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/gputest.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/gputest.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/tests/gputest.cpp [ 80%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/tests/hostallocator.cpp [ 80%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/tests/pmesplinespreadtest.cpp [ 80%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/tests/pmetestcommon.cpp [ 80%] Building CXX object src/gromacs/fft/tests/CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/fft/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 80%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/tests/cmdlineparser.cpp [ 80%] Linking CXX executable ../../../../bin/fft-test cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 80%] Built target fft-test make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/tests /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/hardware/tests /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/hardware/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend.internal". Scanning dependencies of target hardware-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 80%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/cpuinfo.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/hardware/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/hardware-test.dir/cpuinfo.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/tests/cpuinfo.cpp [ 80%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/tests/testhardwarecontexts.cpp In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include/gtest/internal/gtest-port.h:279, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include/gtest/internal/gtest-linked_ptr.h:74, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include/gmock/internal/gmock-port.h:53, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include/gmock/internal/gmock-generated-internal-utils.h:44, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include/gmock/internal/gmock-internal-utils.h:45, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include/gmock/gmock-actions.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include/gmock/gmock.h:58, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/tests/pmesplinespreadtest.cpp:47: /usr/include/c++/9/bits/stl_vector.h: In constructor 'std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = __gnu_cxx::__normal_iterator*, std::vector > >; = void; _Tp = gmx::BasicVector; _Alloc = std::allocator >]': /usr/include/c++/9/bits/stl_vector.h:650:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 650 | vector(_InputIterator __first, _InputIterator __last, | ^~~~~~ /usr/include/c++/9/bits/stl_vector.h:650:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 [ 80%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/hardware/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/tests/hardwaretopology.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/tests/pmesplinespreadtest.cpp: In function 'void __static_initialization_and_destruction_0(int, int)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/tests/pmesplinespreadtest.cpp:326:114: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 326 | CoordinatesVector const c_sampleCoordinates1(c_sampleCoordinatesFull.begin(), c_sampleCoordinatesFull.begin() + 1); | ^ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/tests/pmesplinespreadtest.cpp:328:118: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 328 | CoordinatesVector const c_sampleCoordinates2(c_sampleCoordinatesFull.begin() + 1, c_sampleCoordinatesFull.begin() + 3); | ^ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/tests/pmesplinespreadtest.cpp:330:120: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 330 | CoordinatesVector const c_sampleCoordinates13(c_sampleCoordinatesFull.begin() + 3, c_sampleCoordinatesFull.begin() + 16); | ^ [ 80%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/hardware/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/math/tests /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake --color= [ 81%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/math/tests/CMakeFiles/math-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/math/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/math/tests/CMakeFiles/math-test.dir/depend.internal". Scanning dependencies of target math-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 81%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/arrayrefwithpadding.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/arrayref.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/arrayrefwithpadding.h:49, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/arrayrefwithpadding.cpp:43: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = gmx::Allocator]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/arrayref.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/arrayrefwithpadding.h:49, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/arrayrefwithpadding.cpp:43: /usr/include/c++/9/bits/stl_vector.h: In member function 'testing::Test* testing::internal::TestFactoryImpl::CreateTest() [with TestClass = gmx::{anonymous}::ArrayRefWithPaddingTest_ConstructFromPointersWorks_Test >]': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h: In member function 'testing::Test* testing::internal::TestFactoryImpl::CreateTest() [with TestClass = gmx::{anonymous}::ArrayRefWithPaddingTest_AssignFromPaddedVectorWorks_Test >]': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ [ 82%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 82%] Linking CXX executable ../../../../bin/hardware-test cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/hardware-test.dir/cpuinfo.cpp.o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm [ 82%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/pargs.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/pargs.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/tests/pargs.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 82%] Built target hardware-test [ 82%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/dofit.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/dofit.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/dofit.cpp [ 82%] Linking CXX executable ../../../../bin/ewald-test cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/ewald-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 83%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/functions.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/functions.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/functions.cpp [ 83%] Built target ewald-test make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/mdrunutility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend.internal". Scanning dependencies of target mdrunutility-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 83%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrunutility/tests/threadaffinity-mpi.cpp [ 83%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/hostallocator.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/tests/hostallocator.cpp:43: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = gmx::Allocator]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/hostallocator.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/tests/hostallocator.cpp:43: /usr/include/c++/9/bits/stl_vector.h: In member function 'void gmx::test::HostAllocatorTestCopyable_VectorsWithDefaultHostAllocatorAlwaysWorks_Test::TestBody() [with gtest_TypeParam_ = double]': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/hostallocator.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/tests/hostallocator.cpp:43: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = gmx::BasicVector; _Alloc = gmx::Allocator, gmx::HostAllocationPolicy>]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector, gmx::Allocator, gmx::HostAllocationPolicy> >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::HostAllocationPolicy> > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/hostallocator.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/tests/hostallocator.cpp:43: /usr/include/c++/9/bits/stl_vector.h: In member function 'void gmx::test::HostAllocatorTestCopyable_VectorsWithDefaultHostAllocatorAlwaysWorks_Test::TestBody() [with gtest_TypeParam_ = gmx::BasicVector]': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::HostAllocationPolicy> > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::HostAllocationPolicy> > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include/gtest/gtest.h:56, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/functions.cpp:49: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ [ 83%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/invertmatrix.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/invertmatrix.cpp /usr/include/c++/9/bits/stl_vector.h: In function 'void gmx::test::fillInput(PaddedVectorOfT*, int) [with PaddedVectorOfT = gmx::PaddedVector >]': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h: In function 'void gmx::test::fillInput(PaddedVectorOfT*, int) [with PaddedVectorOfT = gmx::PaddedVector, gmx::Allocator, gmx::HostAllocationPolicy> >]': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::HostAllocationPolicy> > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ [ 83%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/tests/hostallocator.cpp:57: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/testarrayrefs.h: In function 'void gmx::test::compareViews(gmx::ArrayRef, gmx::ArrayRef) [with T = double]': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/testarrayrefs.h:97:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 97 | void compareViews(ArrayRef input, | ^~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/testarrayrefs.h:97:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/tests/hostallocator.cpp: In function 'void gmx::test::runTest(const gmx_gpu_info_t&, gmx::ArrayRef, gmx::ArrayRef) [with T = double]': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/tests/hostallocator.cpp:99:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 99 | void runTest(const gmx_gpu_info_t &gpuInfo, | ^~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/tests/hostallocator.cpp:99:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/hostallocator.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/tests/hostallocator.cpp:43: /usr/include/c++/9/bits/stl_vector.h: In member function 'void gmx::test::HostAllocatorTestCopyable_TransfersWithoutPinningWork_Test::TestBody() [with gtest_TypeParam_ = double]': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/tests/hostallocator.cpp:204:12: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 204 | runTest(*this->gpuInfo_, makeArrayRef(input), makeArrayRef(output)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/tests/hostallocator.cpp:204:12: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/tests/hostallocator.cpp:204:12: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/tests/hostallocator.cpp:57: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/testarrayrefs.h: In function 'void gmx::test::compareViews(gmx::ArrayRef >, gmx::ArrayRef >) [with T = double]': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/testarrayrefs.h:109:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 109 | void compareViews(ArrayRef < BasicVector < T>> input, | ^~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/testarrayrefs.h:109:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/tests/hostallocator.cpp: In function 'void gmx::test::runTest(const gmx_gpu_info_t&, gmx::ArrayRef, gmx::ArrayRef) [with T = gmx::BasicVector]': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/tests/hostallocator.cpp:99:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 99 | void runTest(const gmx_gpu_info_t &gpuInfo, | ^~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/tests/hostallocator.cpp:99:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/hostallocator.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/tests/hostallocator.cpp:43: /usr/include/c++/9/bits/stl_vector.h: In member function 'void gmx::test::HostAllocatorTestCopyable_TransfersWithoutPinningWork_Test::TestBody() [with gtest_TypeParam_ = gmx::BasicVector]': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::HostAllocationPolicy> > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/tests/hostallocator.cpp:204:12: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 204 | runTest(*this->gpuInfo_, makeArrayRef(input), makeArrayRef(output)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/tests/hostallocator.cpp:204:12: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/tests/hostallocator.cpp:204:12: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 [ 83%] Linking CXX executable ../../../../bin/commandline-test cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o CMakeFiles/commandline-test.dir/pargs.cpp.o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/commandline-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm [ 84%] Linking CXX executable ../../../../bin/mdrunutility-mpi-test cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/mdrunutility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend.internal". Scanning dependencies of target mdrunutility-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 84%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrunutility/tests/threadaffinity.cpp [ 84%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/paddedvector.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/paddedvector.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/paddedvector.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 84%] Built target commandline-test [ 84%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 84%] Built target mdrunutility-mpi-test make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/tests 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Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/onlinehelp/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend.internal". Scanning dependencies of target onlinehelp-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 84%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/tests/helpformat.cpp [ 84%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/tests/helpmanager.cpp [ 84%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/tests/helpwritercontext.cpp [ 84%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/tests/devicetransfers.cpp [ 84%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 84%] Linking CXX executable ../../../../bin/mdrunutility-test cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm [ 85%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 85%] Built target mdrunutility-test [ 85%] Linking CXX executable ../../../../bin/gpu_utils-test cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/tests /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/options/tests /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake --color= /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/gpu_utils-test.dir/gputest.cpp.o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gpu_utils-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/options/tests/CMakeFiles/options-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/options/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/options/tests/CMakeFiles/options-test.dir/depend.internal". Scanning dependencies of target options-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 85%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/tests/abstractoptionstorage.cpp [ 85%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoption.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/tests/filenameoption.cpp [ 85%] Linking CXX executable ../../../../bin/onlinehelp-test cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/onlinehelp-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 85%] Built target gpu_utils-test make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tests /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/random/tests /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/random/tests/CMakeFiles/random-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/random/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/random/tests/CMakeFiles/random-test.dir/depend.internal". Scanning dependencies of target random-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 85%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/exponentialdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/exponentialdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tests/exponentialdistribution.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 85%] Built target onlinehelp-test make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/restraint/tests /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/restraint/tests /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/restraint/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend.internal". Scanning dependencies of target restraintpotential-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 85%] Building CXX object src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/manager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/restraint/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/restraint/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/restraintpotential-test.dir/manager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/restraint/tests/manager.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include/gtest/gtest.h:56, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tests/exponentialdistribution.cpp:45: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'virtual void gmx::{anonymous}::ExponentialDistributionTest_Output_Test::TestBody()': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ [ 85%] Building CXX object src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/restraint/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/restraint/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 85%] Linking CXX executable ../../../../bin/restraintpotential-test cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/restraintpotential-test.dir/manager.cpp.o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/restraintpotential-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/paddedvector.cpp:59: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/testarrayrefs.h: In function 'void gmx::test::fillInputContents(gmx::ArrayRef >, int) [with T = double]': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/testarrayrefs.h:70:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 70 | void fillInputContents(ArrayRef < BasicVector < T>> inputRef, | ^~~~~~~~~~~~~~~~~ [ 85%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/gammadistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tests/gammadistribution.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 85%] Built target restraintpotential-test make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/tables/tests /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/tables/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend.internal". Scanning dependencies of target table-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 85%] Building CXX object src/gromacs/tables/tests/CMakeFiles/table-test.dir/splinetable.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/tables/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/table-test.dir/splinetable.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp [ 85%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/tests/filenameoptionmanager.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include/gtest/gtest.h:56, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tests/gammadistribution.cpp:45: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/paddedvector.cpp:47: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/paddedvector.cpp:47: /usr/include/c++/9/bits/stl_vector.h: In function 'void gmx::test::fillInput(PaddedVectorOfT*, int) [with PaddedVectorOfT = gmx::PaddedVector >]': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/paddedvector.cpp:47: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = gmx::BasicVector; _Alloc = gmx::Allocator, gmx::AlignedAllocationPolicy>]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'virtual void gmx::{anonymous}::GammaDistributionTest_Output_Test::TestBody()': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/paddedvector.cpp:47: /usr/include/c++/9/bits/stl_vector.h: In function 'void gmx::test::fillInput(PaddedVectorOfT*, int) [with PaddedVectorOfT = gmx::PaddedVector, gmx::Allocator, gmx::AlignedAllocationPolicy> >]': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ [ 85%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/normaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tests/normaldistribution.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/paddedvector.cpp:47: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = gmx::Allocator]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/paddedvector.cpp:47: /usr/include/c++/9/bits/stl_vector.h: In function 'void gmx::test::fillInput(PaddedVectorOfT*, int) [with PaddedVectorOfT = gmx::PaddedVector >]': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/paddedvector.cpp:47: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = gmx::BasicVector; _Alloc = std::allocator >]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/paddedvector.cpp:47: /usr/include/c++/9/bits/stl_vector.h: In function 'void gmx::test::fillInput(PaddedVectorOfT*, int) [with PaddedVectorOfT = gmx::PaddedVector, std::allocator > >]': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include/gtest/gtest.h:56, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tests/normaldistribution.cpp:45: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/paddedvector.cpp:59: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/testarrayrefs.h: In function 'void gmx::test::compareViews(gmx::ArrayRef, gmx::ArrayRef) [with T = double]': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/testarrayrefs.h:97:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 97 | void compareViews(ArrayRef input, | ^~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/testarrayrefs.h:97:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/testarrayrefs.h: In function 'void gmx::test::compareViews(gmx::ArrayRef >, gmx::ArrayRef >) [with T = double]': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/testarrayrefs.h:109:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 109 | void compareViews(ArrayRef < BasicVector < T>> input, | ^~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/testarrayrefs.h:109:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 /usr/include/c++/9/bits/vector.tcc: In member function 'virtual void gmx::{anonymous}::NormalDistributionTest_Output_Test::TestBody()': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ [ 85%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/seed.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/seed.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tests/seed.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp: In member function 'void gmx::test::{anonymous}::SplineTableTest_NumericalInputPmeCorr_Test::TestBody() [with gtest_TypeParam_ = gmx::QuadraticSplineTable]': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:517:16: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 517 | TypeParam pmeCorrTable( {{"NumericalPMECorr", functionValues, derivativeValues, inputSpacing}}, | ^~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp: In member function 'void gmx::test::{anonymous}::SplineTableTest_NumericalInputPmeCorr_Test::TestBody() [with gtest_TypeParam_ = gmx::CubicSplineTable]': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:517:16: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 517 | TypeParam pmeCorrTable( {{"NumericalPMECorr", functionValues, derivativeValues, inputSpacing}}, | ^~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include/gtest/gtest.h:56, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:50: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include/gtest/gtest.h:58, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:50: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp: In member function 'void gmx::test::{anonymous}::SplineTableTest_HandlesIncorrectNumericalInput_Test::TestBody() [with gtest_TypeParam_ = gmx::QuadraticSplineTable]': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:461:22: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 461 | EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.001}}, | ^~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/testutils/testasserts.h:176:5: note: in expansion of macro 'GMX_TEST_THROW_' 176 | GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:461:5: note: in expansion of macro 'EXPECT_THROW_GMX' 461 | EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.001}}, | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:467:22: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 467 | EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.1}}, | ^~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/testutils/testasserts.h:176:5: note: in expansion of macro 'GMX_TEST_THROW_' 176 | GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:467:5: note: in expansion of macro 'EXPECT_THROW_GMX' 467 | EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.1}}, | ^~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include/gtest/gtest.h:56, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:50: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include/gtest/gtest.h:58, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:50: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:489:22: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 489 | EXPECT_THROW_GMX(TypeParam( {{"NumericalBadLJ12", functionValues, badDerivativeValues, spacing}}, | ^~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/testutils/testasserts.h:176:5: note: in expansion of macro 'GMX_TEST_THROW_' 176 | GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:489:5: note: in expansion of macro 'EXPECT_THROW_GMX' 489 | EXPECT_THROW_GMX(TypeParam( {{"NumericalBadLJ12", functionValues, badDerivativeValues, spacing}}, | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:494:22: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 494 | EXPECT_THROW_GMX(TypeParam( {{"NumericalLJ12", functionValues, derivativeValues, spacing}}, | ^~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/testutils/testasserts.h:176:5: note: in expansion of macro 'GMX_TEST_THROW_' 176 | GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:494:5: note: in expansion of macro 'EXPECT_THROW_GMX' 494 | EXPECT_THROW_GMX(TypeParam( {{"NumericalLJ12", functionValues, derivativeValues, spacing}}, | ^~~~~~~~~~~~~~~~ [ 85%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/option.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/option.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/tests/option.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp: In member function 'void gmx::test::{anonymous}::SplineTableTest_HandlesIncorrectNumericalInput_Test::TestBody() [with gtest_TypeParam_ = gmx::CubicSplineTable]': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:461:22: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 461 | EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.001}}, | ^~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/testutils/testasserts.h:176:5: note: in expansion of macro 'GMX_TEST_THROW_' 176 | GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:461:5: note: in expansion of macro 'EXPECT_THROW_GMX' 461 | EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.001}}, | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:467:22: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 467 | EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.1}}, | ^~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/testutils/testasserts.h:176:5: note: in expansion of macro 'GMX_TEST_THROW_' 176 | GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:467:5: note: in expansion of macro 'EXPECT_THROW_GMX' 467 | EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.1}}, | ^~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include/gtest/gtest.h:56, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:50: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include/gtest/gtest.h:58, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:50: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:489:22: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 489 | EXPECT_THROW_GMX(TypeParam( {{"NumericalBadLJ12", functionValues, badDerivativeValues, spacing}}, | ^~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/testutils/testasserts.h:176:5: note: in expansion of macro 'GMX_TEST_THROW_' 176 | GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:489:5: note: in expansion of macro 'EXPECT_THROW_GMX' 489 | EXPECT_THROW_GMX(TypeParam( {{"NumericalBadLJ12", functionValues, badDerivativeValues, spacing}}, | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:494:22: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 494 | EXPECT_THROW_GMX(TypeParam( {{"NumericalLJ12", functionValues, derivativeValues, spacing}}, | ^~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/testutils/testasserts.h:176:5: note: in expansion of macro 'GMX_TEST_THROW_' 176 | GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:494:5: note: in expansion of macro 'EXPECT_THROW_GMX' 494 | EXPECT_THROW_GMX(TypeParam( {{"NumericalLJ12", functionValues, derivativeValues, spacing}}, | ^~~~~~~~~~~~~~~~ [ 85%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tests/tabulatednormaldistribution.cpp [ 85%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/threefry.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/threefry.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tests/threefry.cpp [ 85%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/optionsassigner.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/tests/optionsassigner.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include/gtest/gtest.h:56, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tests/tabulatednormaldistribution.cpp:45: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ [ 85%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/vectypes.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/vectypes.cpp /usr/include/c++/9/bits/vector.tcc: In member function 'virtual void gmx::{anonymous}::TabulatedNormalDistributionTest_OutputDouble14_Test::TestBody()': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /usr/include/c++/9/bits/random.h:34, from /usr/include/c++/9/random:49, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/seed.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/threefry.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tests/threefry.cpp:43: /usr/include/c++/9/bits/stl_vector.h: In constructor 'std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/include/c++/9/bits/stl_vector.h:622:7: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 622 | vector(initializer_list __l, | ^~~~~~ In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/vectypes.cpp:50: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double (&)[3]}; _Tp = gmx::BasicVector; _Alloc = std::allocator >]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ [ 86%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/uniformintdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tests/uniformintdistribution.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tests/threefry.cpp: In function 'void __static_initialization_and_destruction_0(int, int)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tests/threefry.cpp:119:40: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 119 | }}; | ^ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tests/threefry.cpp:131:39: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 131 | }}; | ^ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tests/threefry.cpp:142:38: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 142 | }}; | ^ /usr/include/c++/9/bits/vector.tcc: In member function 'virtual void {anonymous}::RVecTest_ConvertsImplicitlyFrom_rvec_Test::TestBody()': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ [ 86%] Building CXX object src/gromacs/tables/tests/CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/tables/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 86%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 86%] Linking CXX executable ../../../../bin/table-test cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/table-test.dir/splinetable.cpp.o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/table-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm [ 86%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tests/uniformrealdistribution.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 86%] Built target table-test make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/tests /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/taskassignment/tests /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/taskassignment/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend.internal". Scanning dependencies of target taskassignment-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 86%] Building CXX object src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/tests/usergpuids.cpp [ 86%] Linking CXX executable ../../../../bin/math-test cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o CMakeFiles/math-test.dir/dofit.cpp.o CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/paddedvector.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm [ 86%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 86%] Built target math-test make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/utility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend.internal". Scanning dependencies of target utility-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 86%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator-mpi.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator-mpi.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests/physicalnodecommunicator-mpi.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include/gtest/gtest.h:56, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tests/uniformrealdistribution.cpp:45: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ [ 86%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/utility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend.internal". Scanning dependencies of target utility-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 87%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/alignedallocator.cpp.o [ 87%] Linking CXX executable ../../../../bin/utility-mpi-test cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests/alignedallocator.cpp cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator-mpi.cpp.o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 87%] Built target utility-mpi-test make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/tests /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/fileio/tests /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/fileio/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend.internal". Scanning dependencies of target fileio-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 87%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/confio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/confio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/tests/confio.cpp [ 87%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/repeatingsection.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/tests/repeatingsection.cpp [ 87%] Linking CXX executable ../../../../bin/random-test cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/random-test.dir/exponentialdistribution.cpp.o CMakeFiles/random-test.dir/gammadistribution.cpp.o CMakeFiles/random-test.dir/normaldistribution.cpp.o CMakeFiles/random-test.dir/seed.cpp.o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o CMakeFiles/random-test.dir/threefry.cpp.o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/random-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 87%] Built target random-test make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/tests /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/pulling/tests /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/pulling/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend.internal". Scanning dependencies of target pull-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 87%] Building CXX object src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/pull.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/pulling/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/pull-test.dir/pull.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/tests/pull.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/tests/confio.cpp:48: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {int, int, int}; _Tp = gmx::BasicVector; _Alloc = std::allocator >]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'testing::Test* testing::internal::ParameterizedTestFactory::CreateTest() [with TestClass = {anonymous}::StructureIORoundtripTest_ReadWriteTpsConf_Test]': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ [ 87%] Building CXX object src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 87%] Linking CXX executable ../../../../bin/taskassignment-test cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/taskassignment-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm [ 87%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/filemd5.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/filemd5.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/tests/filemd5.cpp [ 87%] Building CXX object src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/pulling/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 87%] Built target taskassignment-test make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/tests /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/awh/tests /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/awh/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend.internal". Scanning dependencies of target awh-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 88%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/bias.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/bias.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/tests/bias.cpp [ 88%] Linking CXX executable ../../../../bin/pull-test cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/pull-test.dir/pull.cpp.o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pull-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 88%] Built target pull-test make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/tests /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/simd/tests /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/simd/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend.internal". Scanning dependencies of target simd-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 88%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/tests/bootstrap_loadstore.cpp [ 88%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/readinp.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/tests/readinp.cpp [ 88%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/base.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/base.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/tests/base.cpp [ 88%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/timeunitmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/tests/timeunitmanager.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/tests/bias.cpp:37: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double&, double&, double&}; _Tp = gmx::DimParams; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In function 'gmx::test::AwhTestParameters gmx::test::getAwhTestParameters(int, int)': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/tests/bias.cpp:37: /usr/include/c++/9/bits/stl_vector.h: In member function 'virtual void gmx::test::BiasTest_ForcesBiasPmf_Test::TestBody()': /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ [ 88%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/arrayref.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests/arrayref.cpp [ 88%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/tngio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/tngio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/tests/tngio.cpp [ 88%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/tests/simd.cpp [ 88%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/tests/simd_floatingpoint.cpp [ 88%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 88%] Linking CXX executable ../../../../bin/fileio-test cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/fileio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileio-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/fileio-test.dir/confio.cpp.o CMakeFiles/fileio-test.dir/filemd5.cpp.o CMakeFiles/fileio-test.dir/readinp.cpp.o CMakeFiles/fileio-test.dir/tngio.cpp.o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fileio-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm [ 88%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/tests/simd_floatingpoint_util.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 88%] Built target fileio-test make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/compat/tests /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/compat/tests /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/compat/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend.internal". Scanning dependencies of target compat-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build [ 88%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/treesupport.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/tests/treesupport.cpp make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 88%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/make_unique.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/make_unique.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/compat/tests/make_unique.cpp [ 89%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/tests/simd_vector_operations.cpp [ 89%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/biasstate.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/tests/biasstate.cpp [ 89%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_math.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_math.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/tests/simd_math.cpp [ 89%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/pointers.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/pointers.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/compat/tests/pointers.cpp [ 89%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_memory.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/tests/simd_memory.cpp [ 89%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_integer.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_integer.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/tests/simd_integer.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.h:57, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/tests/biasstate.cpp:37: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double, double, double&}; _Tp = gmx::DimParams; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ [ 89%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double, double, double&}; _Tp = gmx::DimParams; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ [ 89%] Linking CXX executable ../../../../bin/compat-test cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/compat/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/compat-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/compat-test.dir/make_unique.cpp.o CMakeFiles/compat-test.dir/pointers.cpp.o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/compat-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm [ 89%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/tests/simd4.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 89%] Built target compat-test make -f src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build.make src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/tests /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/gmxana/tests /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/gmxana/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/depend.internal". Scanning dependencies of target gmxana-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make -f src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build.make src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 89%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/entropy.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/gmxana/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxana-test.dir/entropy.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/tests/entropy.cpp [ 89%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/grid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/grid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/tests/grid.cpp [ 89%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/tests/simd4_floatingpoint.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/arrayref.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/thermochemistry.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/tests/entropy.cpp:43: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/arrayref.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/thermochemistry.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/tests/entropy.cpp:43: /usr/include/c++/9/bits/stl_vector.h: In member function 'void gmx::{anonymous}::Entropy::runQuasiHarmonic(real, gmx_bool)': /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h: In function 'void gmx::{anonymous}::Entropy::runSchlitter(real, gmx_bool)': /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ [ 89%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/gmxana/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/tests/gmx_traj.cpp [ 89%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/tests/simd4_vector_operations.cpp [ 89%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/dimparams.h:52, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/grid.h:60, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/tests/grid.cpp:37: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&, double, const double&}; _Tp = gmx::DimParams; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const double&, double, const double&}; _Tp = gmx::DimParams; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ [ 89%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 89%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_math.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4_math.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/tests/simd4_math.cpp [ 90%] Linking CXX executable ../../../../bin/options-test cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/options/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/options-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o CMakeFiles/options-test.dir/filenameoption.cpp.o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o CMakeFiles/options-test.dir/option.cpp.o CMakeFiles/options-test.dir/optionsassigner.cpp.o CMakeFiles/options-test.dir/repeatingsection.cpp.o CMakeFiles/options-test.dir/timeunitmanager.cpp.o CMakeFiles/options-test.dir/treesupport.cpp.o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/options-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm [ 90%] Linking CXX executable ../../../../bin/awh-test cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/awh-test.dir/bias.cpp.o CMakeFiles/awh-test.dir/biasstate.cpp.o CMakeFiles/awh-test.dir/grid.cpp.o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/awh-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm [ 90%] Built target options-test make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/gmxpreprocess/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx-test.dir/depend.internal". Scanning dependencies of target pdb2gmx-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 90%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx-test.dir/pdb2gmx.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/pdb2gmx-test.dir/pdb2gmx.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/tests/pdb2gmx.cpp [ 90%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/scalar.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/tests/scalar.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 90%] Built target awh-test [ 90%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/pdb2gmx-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 90%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_trjconv.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/gmxana/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxana-test.dir/gmx_trjconv.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/tests/gmx_trjconv.cpp [ 90%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_msd.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/gmxana/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxana-test.dir/gmx_msd.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/tests/gmx_msd.cpp [ 90%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/gmxana/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/gmxpreprocess/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/depend.internal". Scanning dependencies of target gmxpreprocess-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 90%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/tests/genconf.cpp [ 90%] Linking CXX executable ../../../../bin/gmxana-test cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/gmxana/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxana-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/gmxana-test.dir/entropy.cpp.o CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o CMakeFiles/gmxana-test.dir/gmx_trjconv.cpp.o CMakeFiles/gmxana-test.dir/gmx_msd.cpp.o CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gmxana-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm [ 90%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_util.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/scalar_util.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/tests/scalar_util.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 90%] Built target gmxana-test make -f src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build.make src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/correlationfunctions/tests /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/correlationfunctions/tests /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/correlationfunctions/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/depend.internal". Scanning dependencies of target correlations-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make -f src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build.make src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 90%] Building CXX object src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/autocorr.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/correlations-test.dir/autocorr.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/correlationfunctions/tests/autocorr.cpp [ 90%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/insert-molecules.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxpreprocess-test.dir/insert-molecules.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/tests/insert-molecules.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/filenm.h:48, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/pargs.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/correlationfunctions/autocorr.h:53, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/correlationfunctions/tests/autocorr.cpp:45: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'virtual void gmx::{anonymous}::AutocorrTest_EacP3_Test::TestBody()': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'virtual void gmx::{anonymous}::AutocorrTest_EacP1_Test::TestBody()': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'virtual void gmx::{anonymous}::AutocorrTest_EacNoNormalize_Test::TestBody()': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'virtual void gmx::{anonymous}::AutocorrTest_EacCos_Test::TestBody()': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'virtual void gmx::{anonymous}::AutocorrTest_EacP0_Test::TestBody()': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'virtual void gmx::{anonymous}::AutocorrTest_EacVector_Test::TestBody()': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'virtual void gmx::{anonymous}::AutocorrTest_EacRcross_Test::TestBody()': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'virtual void gmx::{anonymous}::AutocorrTest_EacNormal_Test::TestBody()': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'virtual void gmx::{anonymous}::AutocorrTest_EacP4_Test::TestBody()': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'virtual void gmx::{anonymous}::AutocorrTest_EacP2_Test::TestBody()': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ [ 90%] Linking CXX executable ../../../../bin/pdb2gmx-test cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/pdb2gmx-test.dir/pdb2gmx.cpp.o CMakeFiles/pdb2gmx-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pdb2gmx-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm [ 90%] Building CXX object src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/correlationfunctions/tests/manyautocorrelation.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 90%] Built target pdb2gmx-test make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/tests /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/analysisdata/tests /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/analysisdata/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/depend.internal". Scanning dependencies of target analysisdata-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 90%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/tests/analysisdata.cpp [ 91%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/tests/readir.cpp [ 91%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_math.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/scalar_math.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/tests/scalar_math.cpp [ 91%] Building CXX object src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/correlationdataset.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/correlations-test.dir/correlationdataset.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/correlationfunctions/tests/correlationdataset.cpp [ 91%] Building CXX object src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/expfit.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/correlations-test.dir/expfit.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/correlationfunctions/tests/expfit.cpp [ 92%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o [ 92%] Building CXX object src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/tests/solvate.cpp [ 92%] Linking CXX executable ../../../../bin/correlations-test cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/correlationfunctions/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/correlations-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/correlations-test.dir/autocorr.cpp.o CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o CMakeFiles/correlations-test.dir/correlationdataset.cpp.o CMakeFiles/correlations-test.dir/expfit.cpp.o CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/correlations-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 92%] Built target correlations-test [ 92%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/arraydata.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/analysisdata-test.dir/arraydata.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/tests/arraydata.cpp [ 92%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H 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/builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 92%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 92%] Linking CXX executable ../../../../bin/gmxpreprocess-test cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxpreprocess-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o CMakeFiles/gmxpreprocess-test.dir/insert-molecules.cpp.o CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gmxpreprocess-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm [ 93%] Linking CXX executable ../../../../bin/simd-test cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/simd/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/simd-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o CMakeFiles/simd-test.dir/base.cpp.o CMakeFiles/simd-test.dir/simd.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd_math.cpp.o CMakeFiles/simd-test.dir/simd_memory.cpp.o CMakeFiles/simd-test.dir/simd_integer.cpp.o CMakeFiles/simd-test.dir/simd4.cpp.o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd4_math.cpp.o CMakeFiles/simd-test.dir/scalar.cpp.o CMakeFiles/simd-test.dir/scalar_util.cpp.o CMakeFiles/simd-test.dir/scalar_math.cpp.o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/simd-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 93%] Built target gmxpreprocess-test make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/tests /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/selection/tests 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Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/selection/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/selection/tests/CMakeFiles/selection-test.dir/depend.internal". Scanning dependencies of target selection-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 94%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/indexutil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/selection-test.dir/indexutil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/tests/indexutil.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 94%] Built target simd-test make -f src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build.make src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/tests /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/trajectoryanalysis/tests /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/trajectoryanalysis/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/depend.internal". Scanning dependencies of target trajectoryanalysis-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make -f src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build.make src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 94%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/tests/moduletest.cpp [ 94%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/average.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/analysisdata-test.dir/average.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/tests/average.cpp [ 94%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/tests/clustsize.cpp [ 94%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/nbsearch.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/selection-test.dir/nbsearch.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/tests/nbsearch.cpp [ 94%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/histogram.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/analysisdata-test.dir/histogram.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/tests/histogram.cpp [ 94%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/tests/cmdlinerunner.cpp [ 94%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/lifetime.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/analysisdata-test.dir/lifetime.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/tests/lifetime.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/nbsearch.h:52, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/tests/nbsearch.cpp:49: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double (&)[3]}; _Tp = gmx::BasicVector; _Alloc = std::allocator >]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gmx::BasicVector}; _Tp = gmx::BasicVector; _Alloc = std::allocator >]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 /usr/include/c++/9/bits/vector.tcc: In function 'void {anonymous}::NeighborhoodSearchTest::testPairSearch(gmx::AnalysisNeighborhoodSearch*, const {anonymous}::NeighborhoodSearchTestData&)': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In function 'void {anonymous}::NeighborhoodSearchTest::testPairSearchIndexed(gmx::AnalysisNeighborhood*, const {anonymous}::NeighborhoodSearchTestData&, uint64_t)': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'void {anonymous}::NeighborhoodSearchTestData::generateRandomRefPositions(int)': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'virtual void {anonymous}::NeighborhoodSearchTest_GridSelfPairsSearch_Test::TestBody()': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'virtual void {anonymous}::NeighborhoodSearchTest_SimpleSelfPairsSearch_Test::TestBody()': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ [ 94%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp /usr/include/c++/9/bits/vector.tcc: In member function 'virtual void {anonymous}::NeighborhoodSearchTest_SimpleSearchExclusions_Test::TestBody()': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'virtual void {anonymous}::NeighborhoodSearchTest_HandlesConcurrentSearches_Test::TestBody()': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'virtual void {anonymous}::NeighborhoodSearchTest_HandlesSkippingPairs_Test::TestBody()': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'virtual void {anonymous}::NeighborhoodSearchTest_GridSearchExclusions_Test::TestBody()': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ [ 94%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/tests/angle.cpp [ 94%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/poscalc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/selection-test.dir/poscalc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/tests/poscalc.cpp [ 94%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/tests/distance.cpp [ 94%] Linking CXX executable ../../../../bin/analysisdata-test cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/analysisdata/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/analysisdata-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o CMakeFiles/analysisdata-test.dir/arraydata.cpp.o CMakeFiles/analysisdata-test.dir/average.cpp.o CMakeFiles/analysisdata-test.dir/histogram.cpp.o CMakeFiles/analysisdata-test.dir/lifetime.cpp.o CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -o ../../../../bin/analysisdata-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm [ 94%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/tests/freevolume.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 94%] Built target analysisdata-test make -f src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build.make src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/energyanalysis/tests /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/energyanalysis/tests /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/energyanalysis/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/depend.internal". Scanning dependencies of target energyanalysis-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make -f src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build.make src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 94%] Building CXX object src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/energyanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/energyanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/energyanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/energyanalysis/tests/legacyenergy.cpp [ 95%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/tests/pairdist.cpp [ 95%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/selectioncollection.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/selection-test.dir/selectioncollection.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/tests/selectioncollection.cpp [ 95%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/tests/rdf.cpp [ 95%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask32.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests/bitmask32.cpp [ 95%] Building CXX object src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/energyanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/energyanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/energyanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 95%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask64.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests/bitmask64.cpp [ 95%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/tests/sasa.cpp [ 95%] Linking CXX executable ../../../../bin/energyanalysis-test cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/energyanalysis/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/energyanalysis-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/energyanalysis-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 95%] Built target energyanalysis-test make -f src/gromacs/tools/tests/CMakeFiles/tool-test.dir/build.make src/gromacs/tools/tests/CMakeFiles/tool-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tools/tests /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/tools/tests /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/tools/tests/CMakeFiles/tool-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/tools/tests/CMakeFiles/tool-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/tools/tests/CMakeFiles/tool-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/tools/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/tools/tests/CMakeFiles/tool-test.dir/depend.internal". Scanning dependencies of target tool-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make -f src/gromacs/tools/tests/CMakeFiles/tool-test.dir/build.make src/gromacs/tools/tests/CMakeFiles/tool-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 95%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/report-methods.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/tools/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/tools/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tool-test.dir/report-methods.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tools/tests/report-methods.cpp [ 95%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/tests/select.cpp [ 95%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/tools/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/tools/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 95%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp [ 95%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/topologyinformation.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/topologyinformation.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/tests/topologyinformation.cpp [ 95%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask128.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests/bitmask128.cpp [ 95%] Linking CXX executable ../../../../bin/tool-test cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/tools/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/tool-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/tool-test.dir/report-methods.cpp.o CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/tool-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 95%] Built target tool-test make -f src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/depend.internal". Scanning dependencies of target mdrun-non-integrator-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make -f src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 95%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/minimize.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-non-integrator-test.dir/minimize.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests/minimize.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/arrayref.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/modules/surfacearea.h:41, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp:44: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double&, double&, double&}; _Tp = gmx::BasicVector; _Alloc = std::allocator >]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/include/c++/9/bits/vector.tcc: In function 'void {anonymous}::SurfaceAreaTest::generateRandomPositions(int)': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/arrayref.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/modules/surfacearea.h:41, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp:44: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/arrayref.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/modules/surfacearea.h:41, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp:44: /usr/include/c++/9/bits/vector.tcc: In member function 'virtual void {anonymous}::SurfaceAreaTest_ComputesSinglePoint_Test::TestBody()': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/arrayref.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/modules/surfacearea.h:41, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp:44: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/arrayref.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/modules/surfacearea.h:41, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp:44: /usr/include/c++/9/bits/vector.tcc: In member function 'virtual void {anonymous}::SurfaceAreaTest_ComputesTwoPoints_Test::TestBody()': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/arrayref.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/modules/surfacearea.h:41, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp:44: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/arrayref.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/modules/surfacearea.h:41, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp:44: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/arrayref.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/modules/surfacearea.h:41, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp:44: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/arrayref.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/modules/surfacearea.h:41, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp:44: /usr/include/c++/9/bits/vector.tcc: In member function 'virtual void {anonymous}::SurfaceAreaTest_ComputesTwoPointsOfUnequalRadius_Test::TestBody()': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/arrayref.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/modules/surfacearea.h:41, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp:44: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/arrayref.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/modules/surfacearea.h:41, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp:44: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/arrayref.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/modules/surfacearea.h:41, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp:44: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/arrayref.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/modules/surfacearea.h:41, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp:44: /usr/include/c++/9/bits/vector.tcc: In member function 'virtual void {anonymous}::SurfaceAreaTest_SurfacePoints12_Test::TestBody()': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/arrayref.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/modules/surfacearea.h:41, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp:44: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/arrayref.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/modules/surfacearea.h:41, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp:44: /usr/include/c++/9/bits/vector.tcc: In member function 'virtual void {anonymous}::SurfaceAreaTest_SurfacePoints32_Test::TestBody()': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/arrayref.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/modules/surfacearea.h:41, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp:44: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/arrayref.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/modules/surfacearea.h:41, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp:44: /usr/include/c++/9/bits/vector.tcc: In member function 'virtual void {anonymous}::SurfaceAreaTest_SurfacePoints42_Test::TestBody()': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/arrayref.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/modules/surfacearea.h:41, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp:44: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/arrayref.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/modules/surfacearea.h:41, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp:44: /usr/include/c++/9/bits/vector.tcc: In member function 'virtual void {anonymous}::SurfaceAreaTest_SurfacePoints122_Test::TestBody()': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/arrayref.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/modules/surfacearea.h:41, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp:44: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ [ 95%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests/keyvaluetreeserializer.cpp [ 95%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/tests/trajectory.cpp [ 95%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/tests/unionfind.cpp [ 95%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 95%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests/keyvaluetreetransform.cpp [ 95%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/gmxregex.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/gmxregex.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests/gmxregex.cpp [ 96%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests/rerun.cpp [ 96%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H 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/builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 96%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/selectionoption.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/selection-test.dir/selectionoption.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/tests/selectionoption.cpp [ 96%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/toputils.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/selection-test.dir/toputils.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/tests/toputils.cpp [ 96%] Linking CXX executable ../../../../bin/trajectoryanalysis-test cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/trajectoryanalysis/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/trajectoryanalysis-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o CMakeFiles/trajectoryanalysis-test.dir/topologyinformation.cpp.o CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o ../../analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -o ../../../../bin/trajectoryanalysis-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 96%] Built target trajectoryanalysis-test make -f src/programs/mdrun/tests/CMakeFiles/legacy-mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/legacy-mdrun-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd 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Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests/CMakeFiles/legacy-mdrun-test.dir/depend.internal". Scanning dependencies of target legacy-mdrun-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make -f src/programs/mdrun/tests/CMakeFiles/legacy-mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/legacy-mdrun-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make -f src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/DependInfo.cmake --color= [ 97%] Building CXX object src/programs/mdrun/tests/CMakeFiles/legacy-mdrun-test.dir/tpitest.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/legacy-mdrun-test.dir/tpitest.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests/tpitest.cpp Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/depend.internal". Scanning dependencies of target mdrun-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make -f src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 97%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/compressed_x_output.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/compressed_x_output.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests/compressed_x_output.cpp [ 97%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/logger.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/logger.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests/logger.cpp [ 97%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/mutex.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/mutex.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests/mutex.cpp [ 97%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/grompp.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/grompp.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests/grompp.cpp [ 97%] Building CXX object src/programs/mdrun/tests/CMakeFiles/legacy-mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/legacy-mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 97%] Linking CXX executable ../../../../bin/mdrun-non-integrator-test cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-non-integrator-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrun-non-integrator-test.dir/minimize.cpp.o CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrun_test_objlib.dir/energyreader.cpp.o CMakeFiles/mdrun_test_objlib.dir/energycomparison.cpp.o CMakeFiles/mdrun_test_objlib.dir/moduletest.cpp.o CMakeFiles/mdrun_test_objlib.dir/simulationdatabase.cpp.o CMakeFiles/mdrun_test_objlib.dir/terminationhelper.cpp.o CMakeFiles/mdrun_test_objlib.dir/trajectorycomparison.cpp.o CMakeFiles/mdrun_test_objlib.dir/trajectoryreader.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -o ../../../../bin/mdrun-non-integrator-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm [ 97%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/initialconstraints.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/initialconstraints.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests/initialconstraints.cpp [ 97%] Linking CXX executable ../../../../bin/legacy-mdrun-test cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/legacy-mdrun-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/legacy-mdrun-test.dir/tpitest.cpp.o CMakeFiles/legacy-mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrun_test_objlib.dir/energyreader.cpp.o CMakeFiles/mdrun_test_objlib.dir/energycomparison.cpp.o CMakeFiles/mdrun_test_objlib.dir/moduletest.cpp.o CMakeFiles/mdrun_test_objlib.dir/simulationdatabase.cpp.o CMakeFiles/mdrun_test_objlib.dir/terminationhelper.cpp.o CMakeFiles/mdrun_test_objlib.dir/trajectorycomparison.cpp.o CMakeFiles/mdrun_test_objlib.dir/trajectoryreader.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -o ../../../../bin/legacy-mdrun-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 97%] Built target mdrun-non-integrator-test [ 97%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/interactiveMD.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/interactiveMD.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests/interactiveMD.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 97%] Built target legacy-mdrun-test [ 97%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/pmetest.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/pmetest.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests/pmetest.cpp [ 97%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/swapcoords.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/swapcoords.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests/swapcoords.cpp [ 97%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests/tabulated_bonded_interactions.cpp [ 97%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/path.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/path.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests/path.cpp [ 97%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/termination.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/termination.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests/termination.cpp [ 97%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/trajectory_writing.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/trajectory_writing.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests/trajectory_writing.cpp [ 97%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/mimic.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/mimic.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests/mimic.cpp [ 98%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 98%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests/physicalnodecommunicator.cpp [100%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/stringutil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/stringutil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests/stringutil.cpp [100%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [100%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/textreader.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/textreader.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests/textreader.cpp [100%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/textwriter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/textwriter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests/textwriter.cpp [100%] Linking CXX executable ../../../../bin/selection-test cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/selection/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/selection-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/selection-test.dir/indexutil.cpp.o CMakeFiles/selection-test.dir/nbsearch.cpp.o CMakeFiles/selection-test.dir/poscalc.cpp.o CMakeFiles/selection-test.dir/selectioncollection.cpp.o CMakeFiles/selection-test.dir/selectionoption.cpp.o CMakeFiles/selection-test.dir/toputils.cpp.o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/selection-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm [100%] Linking CXX executable ../../../../bin/mdrun-test cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrun-test.dir/compressed_x_output.cpp.o CMakeFiles/mdrun-test.dir/grompp.cpp.o CMakeFiles/mdrun-test.dir/initialconstraints.cpp.o CMakeFiles/mdrun-test.dir/interactiveMD.cpp.o CMakeFiles/mdrun-test.dir/pmetest.cpp.o CMakeFiles/mdrun-test.dir/swapcoords.cpp.o CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o CMakeFiles/mdrun-test.dir/termination.cpp.o CMakeFiles/mdrun-test.dir/trajectory_writing.cpp.o CMakeFiles/mdrun-test.dir/mimic.cpp.o CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrun_test_objlib.dir/energyreader.cpp.o CMakeFiles/mdrun_test_objlib.dir/energycomparison.cpp.o CMakeFiles/mdrun_test_objlib.dir/moduletest.cpp.o CMakeFiles/mdrun_test_objlib.dir/simulationdatabase.cpp.o CMakeFiles/mdrun_test_objlib.dir/terminationhelper.cpp.o CMakeFiles/mdrun_test_objlib.dir/trajectorycomparison.cpp.o CMakeFiles/mdrun_test_objlib.dir/trajectoryreader.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -o ../../../../bin/mdrun-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [100%] Built target selection-test [100%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/typetraits.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/typetraits.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests/typetraits.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [100%] Built target mdrun-test [100%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [100%] Linking CXX executable ../../../../bin/utility-test cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/utility-test.dir/alignedallocator.cpp.o CMakeFiles/utility-test.dir/arrayref.cpp.o CMakeFiles/utility-test.dir/bitmask32.cpp.o CMakeFiles/utility-test.dir/bitmask64.cpp.o CMakeFiles/utility-test.dir/bitmask128.cpp.o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o CMakeFiles/utility-test.dir/gmxregex.cpp.o CMakeFiles/utility-test.dir/logger.cpp.o CMakeFiles/utility-test.dir/mutex.cpp.o CMakeFiles/utility-test.dir/path.cpp.o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o CMakeFiles/utility-test.dir/stringutil.cpp.o CMakeFiles/utility-test.dir/textreader.cpp.o CMakeFiles/utility-test.dir/textwriter.cpp.o CMakeFiles/utility-test.dir/typetraits.cpp.o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [100%] Built target utility-test make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/CMakeFiles/tests.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/CMakeFiles/tests.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/CMakeFiles/tests.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/CMakeFiles/tests.dir/depend.internal". Scanning dependencies of target tests make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[3]: Nothing to be done for 'CMakeFiles/tests.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [100%] Built target tests make -f CMakeFiles/run-ctest-nophys.dir/build.make CMakeFiles/run-ctest-nophys.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/CMakeFiles/run-ctest-nophys.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/CMakeFiles/run-ctest-nophys.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/CMakeFiles/run-ctest-nophys.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/CMakeFiles/run-ctest-nophys.dir/depend.internal". Scanning dependencies of target run-ctest-nophys make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make -f CMakeFiles/run-ctest-nophys.dir/build.make CMakeFiles/run-ctest-nophys.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [100%] Running all tests except physical validation /usr/bin/ctest --output-on-failure -E physicalvalidationtests Test project /builddir/build/BUILD/gromacs-2019.6/serial_d Start 1: TestUtilsUnitTests 1/40 Test #1: TestUtilsUnitTests ............... Passed 0.04 sec Start 2: TestUtilsMpiUnitTests 2/40 Test #2: TestUtilsMpiUnitTests ............ Passed 0.02 sec Start 3: MdlibUnitTest 3/40 Test #3: MdlibUnitTest .................... Passed 0.02 sec Start 4: AppliedForcesUnitTest 4/40 Test #4: AppliedForcesUnitTest ............ Passed 0.02 sec Start 5: ListedForcesTest 5/40 Test #5: ListedForcesTest ................. Passed 0.02 sec Start 6: CommandLineUnitTests 6/40 Test #6: CommandLineUnitTests ............. Passed 0.03 sec Start 7: DomDecTests 7/40 Test #7: DomDecTests ...................... Passed 0.02 sec Start 8: EwaldUnitTests 8/40 Test #8: EwaldUnitTests ................... Passed 0.42 sec Start 9: FFTUnitTests 9/40 Test #9: FFTUnitTests ..................... Passed 0.05 sec Start 10: GpuUtilsUnitTests 10/40 Test #10: GpuUtilsUnitTests ................ Passed 0.02 sec Start 11: HardwareUnitTests 11/40 Test #11: HardwareUnitTests ................ Passed 0.04 sec Start 12: MathUnitTests 12/40 Test #12: MathUnitTests .................... Passed 0.02 sec Start 13: MdrunUtilityUnitTests 13/40 Test #13: MdrunUtilityUnitTests ............ Passed 0.02 sec Start 14: MdrunUtilityMpiUnitTests 14/40 Test #14: MdrunUtilityMpiUnitTests ......... Passed 0.03 sec Start 15: OnlineHelpUnitTests 15/40 Test #15: OnlineHelpUnitTests .............. Passed 0.02 sec Start 16: OptionsUnitTests 16/40 Test #16: OptionsUnitTests ................. Passed 0.03 sec Start 17: RandomUnitTests 17/40 Test #17: RandomUnitTests .................. Passed 0.03 sec Start 18: RestraintTests 18/40 Test #18: RestraintTests ................... Passed 0.02 sec Start 19: TableUnitTests 19/40 Test #19: TableUnitTests ................... Passed 0.52 sec Start 20: TaskAssignmentUnitTests 20/40 Test #20: TaskAssignmentUnitTests .......... Passed 0.02 sec Start 21: UtilityUnitTests 21/40 Test #21: UtilityUnitTests ................. Passed 0.04 sec Start 22: UtilityMpiUnitTests 22/40 Test #22: UtilityMpiUnitTests .............. Passed 0.02 sec Start 23: FileIOTests 23/40 Test #23: FileIOTests ...................... Passed 0.02 sec Start 24: PullTest 24/40 Test #24: PullTest ......................... Passed 0.02 sec Start 25: AwhTest 25/40 Test #25: AwhTest .......................... Passed 0.02 sec Start 26: SimdUnitTests 26/40 Test #26: SimdUnitTests .................... Passed 0.02 sec Start 27: CompatibilityHelpersTests 27/40 Test #27: CompatibilityHelpersTests ........ Passed 0.02 sec Start 28: GmxAnaTest 28/40 Test #28: GmxAnaTest ....................... Passed 0.07 sec Start 29: GmxPreprocessTests 29/40 Test #29: GmxPreprocessTests ............... Passed 0.38 sec Start 30: Pdb2gmxTest 30/40 Test #30: Pdb2gmxTest ...................... Passed 27.70 sec Start 31: CorrelationsTest 31/40 Test #31: CorrelationsTest ................. Passed 0.08 sec Start 32: AnalysisDataUnitTests 32/40 Test #32: AnalysisDataUnitTests ............ Passed 0.07 sec Start 33: SelectionUnitTests 33/40 Test #33: SelectionUnitTests ............... Passed 0.30 sec Start 34: TrajectoryAnalysisUnitTests 34/40 Test #34: TrajectoryAnalysisUnitTests ...... Passed 1.35 sec Start 35: EnergyAnalysisUnitTests 35/40 Test #35: EnergyAnalysisUnitTests .......... Passed 0.07 sec Start 36: ToolUnitTests 36/40 Test #36: ToolUnitTests .................... Passed 1.16 sec Start 37: MdrunTests 37/40 Test #37: MdrunTests ....................... Passed 3.44 sec Start 38: MdrunNonIntegratorTests 38/40 Test #38: MdrunNonIntegratorTests .......... Passed 7.45 sec Start 39: LegacyGroupSchemeMdrunTests 39/40 Test #39: LegacyGroupSchemeMdrunTests ...... Passed 1.11 sec Start 40: MdrunMpiTests 40/40 Test #40: MdrunMpiTests .................... Passed 2.51 sec 100% tests passed, 0 tests failed out of 40 Label Time Summary: GTest = 47.24 sec*proc (40 tests) IntegrationTest = 14.58 sec*proc (5 tests) MpiTest = 0.07 sec*proc (3 tests) SlowTest = 27.70 sec*proc (1 test) UnitTest = 4.96 sec*proc (34 tests) Total Test time (real) = 47.32 sec make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [100%] Built target run-ctest-nophys make -f tests/CMakeFiles/missing-tests-notice.dir/build.make tests/CMakeFiles/missing-tests-notice.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/tests /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/tests /builddir/build/BUILD/gromacs-2019.6/serial_d/tests/CMakeFiles/missing-tests-notice.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/tests/CMakeFiles/missing-tests-notice.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/tests/CMakeFiles/missing-tests-notice.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/tests/CMakeFiles/missing-tests-notice.dir/depend.internal". Scanning dependencies of target missing-tests-notice make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make -f tests/CMakeFiles/missing-tests-notice.dir/build.make tests/CMakeFiles/missing-tests-notice.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [100%] Some tests not available cd /builddir/build/BUILD/gromacs-2019.6/serial_d/tests && /usr/bin/cmake -E echo "NOTE: Regression tests have not been run. If you want to run them from the build system, get the correct version of the regression tests package and set REGRESSIONTEST_PATH in CMake to point to it, or set REGRESSIONTEST_DOWNLOAD=ON." NOTE: Regression tests have not been run. If you want to run them from the build system, get the correct version of the regression tests package and set REGRESSIONTEST_PATH in CMake to point to it, or set REGRESSIONTEST_DOWNLOAD=ON. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [100%] Built target missing-tests-notice make -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/CMakeFiles/check.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/CMakeFiles/check.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/CMakeFiles/check.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/CMakeFiles/check.dir/depend.internal". Scanning dependencies of target check make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[3]: Nothing to be done for 'CMakeFiles/check.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [100%] Built target check make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019.6/serial_d/CMakeFiles 0 make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' + test -n '' + for mpi in '' mpich openmpi + test mpich = openmpi + test -n mpich + module load mpi/mpich-arm ++ /usr/share/lmod/lmod/libexec/lmod sh load mpi/mpich-arm + eval '__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib/mpich/lib:1;' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH=/usr/lib/mpich/lib;' export 'LD_LIBRARY_PATH;' '__LMOD_REF_COUNT_LOADEDMODULES=mpi/mpich-arm:1;' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES=mpi/mpich-arm;' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/man/mpich-arm:1\;/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=:/usr/share/man/mpich-arm:/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' 'MPI_BIN=/usr/lib/mpich/bin;' export 'MPI_BIN;' 'MPI_COMPILER=mpich-arm;' export 'MPI_COMPILER;' 'MPI_FORTRAN_MOD_DIR=/usr/lib/gfortran/modules/mpich;' export 'MPI_FORTRAN_MOD_DIR;' 'MPI_HOME=/usr/lib/mpich;' export 'MPI_HOME;' 'MPI_INCLUDE=/usr/include/mpich-arm;' export 'MPI_INCLUDE;' 'MPI_LIB=/usr/lib/mpich/lib;' export 'MPI_LIB;' 'MPI_MAN=/usr/share/man/mpich-arm;' export 'MPI_MAN;' 'MPI_PYTHON2_SITEARCH=/usr/lib/python2.7/site-packages/mpich;' export 'MPI_PYTHON2_SITEARCH;' 'MPI_PYTHON3_SITEARCH=/usr/lib/python3.7/site-packages/mpich;' export 'MPI_PYTHON3_SITEARCH;' 'MPI_PYTHON_SITEARCH=/usr/lib/python2.7/site-packages/mpich;' export 'MPI_PYTHON_SITEARCH;' 'MPI_SUFFIX=_mpich;' export 'MPI_SUFFIX;' 'MPI_SYSCONFIG=/etc/mpich-arm;' export 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/lib/mpich/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/lib/mpich/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib/mpich/lib/pkgconfig:1\;/usr/lib/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=/usr/lib/mpich/lib/pkgconfig::/usr/lib/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' '__LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/mpich-arm:1;' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_=/usr/share/modulefiles/mpi/mpich-arm;' export '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=b3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib/mpich/lib:1 ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ LD_LIBRARY_PATH=/usr/lib/mpich/lib ++ export LD_LIBRARY_PATH ++ __LMOD_REF_COUNT_LOADEDMODULES=mpi/mpich-arm:1 ++ export __LMOD_REF_COUNT_LOADEDMODULES ++ LOADEDMODULES=mpi/mpich-arm ++ export LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH='/usr/share/man/mpich-arm:1;/usr/share/lmod/lmod/share/man:1' ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=:/usr/share/man/mpich-arm:/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ MPI_BIN=/usr/lib/mpich/bin ++ export MPI_BIN ++ MPI_COMPILER=mpich-arm ++ export MPI_COMPILER ++ MPI_FORTRAN_MOD_DIR=/usr/lib/gfortran/modules/mpich ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib/mpich ++ export MPI_HOME ++ MPI_INCLUDE=/usr/include/mpich-arm ++ export MPI_INCLUDE ++ MPI_LIB=/usr/lib/mpich/lib ++ export MPI_LIB ++ MPI_MAN=/usr/share/man/mpich-arm ++ export MPI_MAN ++ MPI_PYTHON2_SITEARCH=/usr/lib/python2.7/site-packages/mpich ++ export MPI_PYTHON2_SITEARCH ++ MPI_PYTHON3_SITEARCH=/usr/lib/python3.7/site-packages/mpich ++ export MPI_PYTHON3_SITEARCH ++ MPI_PYTHON_SITEARCH=/usr/lib/python2.7/site-packages/mpich ++ export MPI_PYTHON_SITEARCH ++ MPI_SUFFIX=_mpich ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/mpich-arm ++ export MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/lib/mpich/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/lib/mpich/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib/mpich/lib/pkgconfig:1;/usr/lib/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=/usr/lib/mpich/lib/pkgconfig::/usr/lib/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ __LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/mpich-arm:1 ++ export __LMOD_REF_COUNT__LMFILES_ ++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-arm ++ export _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=b3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ== ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + test -n mpich + xLD_LIBRARY_PATH=/usr/lib/mpich/lib:/builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/lib/mpich/lib + LD_LIBRARY_PATH=/usr/lib/mpich/lib:/builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm/usr/lib/mpich/lib + make -C mpich_d VERBOSE=1 -j5 check make: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2019.6 -B/builddir/build/BUILD/gromacs-2019.6/mpich_d --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 check make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2019.6 -B/builddir/build/BUILD/gromacs-2019.6/mpich_d --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019.6/mpich_d/CMakeFiles 96 make -f CMakeFiles/Makefile2 CMakeFiles/check.dir/all make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend make -f src/external/googletest/CMakeFiles/gmock.dir/build.make src/external/googletest/CMakeFiles/gmock.dir/depend make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' cd /builddir/build/BUILD/gromacs-2019.6/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/external/googletest /builddir/build/BUILD/gromacs-2019.6/mpich_d /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/external/googletest /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/external/googletest/CMakeFiles/gmock.dir/DependInfo.cmake --color= make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' cd /builddir/build/BUILD/gromacs-2019.6/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2019.6/mpich_d /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake --color= make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' cd /builddir/build/BUILD/gromacs-2019.6/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2019.6/mpich_d /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake --color= make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' cd /builddir/build/BUILD/gromacs-2019.6/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/mpich_d /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/external/googletest/CMakeFiles/gmock.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/external/googletest/CMakeFiles/gmock.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/external/googletest/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/external/googletest/CMakeFiles/gmock.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/mdrunutility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/onlinehelp/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend.internal". make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_external.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' cd /builddir/build/BUILD/gromacs-2019.6/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/mpich_d /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= Scanning dependencies of target onlinehelp-test-shared make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build Scanning dependencies of target mdrunutility-test-shared [ 1%] Built target libgromacs_external make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build Scanning dependencies of target gmock make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make -f src/external/googletest/CMakeFiles/gmock.dir/build.make src/external/googletest/CMakeFiles/gmock.dir/build make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 2%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/tests/mock_helptopic.cpp [ 2%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrunutility/tests/threadaffinitytest.cpp [ 3%] Building CXX object src/external/googletest/CMakeFiles/gmock.dir/googletest/src/gtest-all.cc.o [ 3%] Building CXX object src/external/googletest/CMakeFiles/gmock.dir/googlemock/src/gmock-all.cc.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/external/googletest && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -D_GNU_SOURCE=1 -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmock.dir/googlemock/src/gmock-all.cc.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/src/gmock-all.cc cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/external/googletest && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -D_GNU_SOURCE=1 -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmock.dir/googletest/src/gtest-all.cc.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/src/gtest-all.cc make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_generated.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 21%] Built target libgromacs_generated make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' cd /builddir/build/BUILD/gromacs-2019.6/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/mpich_d /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 82%] Built target libgromacs make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 82%] Built target onlinehelp-test-shared make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 82%] Built target mdrunutility-test-shared [ 82%] Linking CXX static library ../../../lib/libgmock.a cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/external/googletest && /usr/bin/cmake -P CMakeFiles/gmock.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/external/googletest && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmock.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/libgmock.a CMakeFiles/gmock.dir/googlemock/src/gmock-all.cc.o CMakeFiles/gmock.dir/googletest/src/gtest-all.cc.o /usr/bin/ranlib ../../../lib/libgmock.a make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 82%] Built target gmock make -f src/testutils/CMakeFiles/testutils.dir/build.make src/testutils/CMakeFiles/testutils.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' cd /builddir/build/BUILD/gromacs-2019.6/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/testutils /builddir/build/BUILD/gromacs-2019.6/mpich_d /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/testutils /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/testutils/CMakeFiles/testutils.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/testutils/CMakeFiles/testutils.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/testutils/CMakeFiles/testutils.dir/depend.internal". 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/builddir/build/BUILD/gromacs-2019.6/src/testutils/testinit.cpp [ 84%] Building CXX object src/testutils/CMakeFiles/testutils.dir/testmatchers.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils.dir/testmatchers.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/testmatchers.cpp [ 84%] Building CXX object src/testutils/CMakeFiles/testutils.dir/testoptions.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils.dir/testoptions.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/testoptions.cpp [ 84%] Building CXX object src/testutils/CMakeFiles/testutils.dir/textblockmatchers.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils.dir/textblockmatchers.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/textblockmatchers.cpp [ 84%] Building CXX object src/testutils/CMakeFiles/testutils.dir/xvgtest.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils.dir/xvgtest.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/xvgtest.cpp [ 84%] Building CXX object src/testutils/CMakeFiles/testutils.dir/__/external/tinyxml2/tinyxml2.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils.dir/__/external/tinyxml2/tinyxml2.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/tinyxml2/tinyxml2.cpp [ 84%] Linking CXX static library ../../lib/libtestutils.a cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/testutils && /usr/bin/cmake -P CMakeFiles/testutils.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/testutils && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils.dir/link.txt --verbose=1 /usr/bin/ar qc ../../lib/libtestutils.a CMakeFiles/testutils.dir/cmdlinetest.cpp.o CMakeFiles/testutils.dir/conftest.cpp.o CMakeFiles/testutils.dir/filematchers.cpp.o CMakeFiles/testutils.dir/interactivetest.cpp.o CMakeFiles/testutils.dir/loggertest.cpp.o CMakeFiles/testutils.dir/mpi-printer.cpp.o CMakeFiles/testutils.dir/mpitest.cpp.o CMakeFiles/testutils.dir/refdata.cpp.o CMakeFiles/testutils.dir/refdata-xml.cpp.o CMakeFiles/testutils.dir/stdiohelper.cpp.o CMakeFiles/testutils.dir/stringtest.cpp.o CMakeFiles/testutils.dir/testasserts.cpp.o CMakeFiles/testutils.dir/testfilemanager.cpp.o CMakeFiles/testutils.dir/testfileredirector.cpp.o CMakeFiles/testutils.dir/testinit.cpp.o CMakeFiles/testutils.dir/testmatchers.cpp.o CMakeFiles/testutils.dir/testoptions.cpp.o CMakeFiles/testutils.dir/textblockmatchers.cpp.o CMakeFiles/testutils.dir/xvgtest.cpp.o CMakeFiles/testutils.dir/__/external/tinyxml2/tinyxml2.cpp.o /usr/bin/ranlib ../../lib/libtestutils.a make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 84%] Built target testutils make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/depend make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' cd /builddir/build/BUILD/gromacs-2019.6/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/testutils/tests /builddir/build/BUILD/gromacs-2019.6/mpich_d /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/testutils/tests /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/DependInfo.cmake --color= cd /builddir/build/BUILD/gromacs-2019.6/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/compat/tests /builddir/build/BUILD/gromacs-2019.6/mpich_d /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/compat/tests /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/DependInfo.cmake --color= make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' cd /builddir/build/BUILD/gromacs-2019.6/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/testutils/tests /builddir/build/BUILD/gromacs-2019.6/mpich_d /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/testutils/tests /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/testutils/tests/CMakeFiles/testutils-test.dir/DependInfo.cmake --color= make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' cd /builddir/build/BUILD/gromacs-2019.6/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/applied-forces/tests /builddir/build/BUILD/gromacs-2019.6/mpich_d /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/applied-forces/tests /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/DependInfo.cmake --color= cd /builddir/build/BUILD/gromacs-2019.6/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/tests /builddir/build/BUILD/gromacs-2019.6/mpich_d 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Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/testutils/tests/CMakeFiles/testutils-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/testutils/tests/CMakeFiles/testutils-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/testutils/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/testutils/tests/CMakeFiles/testutils-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/compat/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/applied-forces/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/testutils/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/mdlib/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend.internal". Scanning dependencies of target compat-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' Scanning dependencies of target testutils-mpi-test make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' Scanning dependencies of target testutils-test Scanning dependencies of target applied-forces-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/build make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 84%] Building CXX object src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o [ 84%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/make_unique.cpp.o Scanning dependencies of target mdlib-test cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/make_unique.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/compat/tests/make_unique.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/tests/mpitest.cpp make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build [ 85%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/interactivetest.cpp.o make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/interactivetest.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/tests/interactivetest.cpp [ 85%] Building CXX object src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/electricfield.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/applied-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/applied-forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/applied-forces-test.dir/electricfield.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/applied-forces/tests/electricfield.cpp [ 85%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/tests/calc_verletbuf.cpp [ 85%] Building CXX object src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 85%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/pointers.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/pointers.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/compat/tests/pointers.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include/gtest/gtest.h:56, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/applied-forces/tests/electricfield.cpp:46: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = gmx::BasicVector; _Alloc = gmx::Allocator, gmx::AlignedAllocationPolicy>]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ [ 85%] Linking CXX executable ../../../bin/testutils-mpi-test cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-mpi-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_mpich_d.a ../../../lib/libgmock.a -lpthread /usr/lib/mpich/lib/libmpi.so -fopenmp /usr/lib/libtng_io.so.1.8.2 /usr/lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/liblmfit.so -lpthread /usr/lib/mpich/lib/libmpi.so [ 85%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/mdebin.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/mdebin.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/tests/mdebin.cpp In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include/gtest/gtest.h:56, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/applied-forces/tests/electricfield.cpp:46: /usr/include/c++/9/bits/stl_vector.h: In function 'void {anonymous}::ElectricFieldTest::test(int, real, real, real, real, real)': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ [ 85%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/refdata_tests.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/tests/refdata_tests.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 85%] Built target testutils-mpi-test make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' cd /builddir/build/BUILD/gromacs-2019.6/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/tests /builddir/build/BUILD/gromacs-2019.6/mpich_d /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/listed-forces/tests /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/listed-forces/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/depend.internal". Scanning dependencies of target listed-forces-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 85%] Building CXX object src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/bonded.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/listed-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/listed-forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/listed-forces-test.dir/bonded.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/tests/bonded.cpp [ 85%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 85%] Building CXX object src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/applied-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/applied-forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 86%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settle.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/tests/settle.cpp [ 86%] Linking CXX executable ../../../../bin/compat-test cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/compat/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/compat-test.dir/link.txt --verbose=1 /usr/bin/c++ -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/compat-test.dir/make_unique.cpp.o CMakeFiles/compat-test.dir/pointers.cpp.o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/compat-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a -lpthread /usr/lib/mpich/lib/libmpi.so -fopenmp /usr/lib/libtng_io.so.1.8.2 /usr/lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/liblmfit.so -lpthread /usr/lib/mpich/lib/libmpi.so [ 86%] Linking CXX executable ../../../../bin/applied-forces-test cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/applied-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied-forces-test.dir/link.txt --verbose=1 /usr/bin/c++ -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/applied-forces-test.dir/electricfield.cpp.o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/applied-forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a -lpthread /usr/lib/mpich/lib/libmpi.so -fopenmp /usr/lib/libtng_io.so.1.8.2 /usr/lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/liblmfit.so -lpthread /usr/lib/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 86%] Built target compat-test [ 86%] Building CXX object src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/listed-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/listed-forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' cd /builddir/build/BUILD/gromacs-2019.6/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/tests /builddir/build/BUILD/gromacs-2019.6/mpich_d /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/commandline/tests /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/commandline/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend.internal". Scanning dependencies of target commandline-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 86%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/tests/cmdlinehelpmodule.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 86%] Built target applied-forces-test make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' cd /builddir/build/BUILD/gromacs-2019.6/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/tests /builddir/build/BUILD/gromacs-2019.6/mpich_d /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/domdec/tests /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/domdec/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend.internal". Scanning dependencies of target domdec-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 86%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/hashedmap.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/domdec/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/hashedmap.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/tests/hashedmap.cpp [ 86%] Linking CXX executable ../../../../bin/listed-forces-test cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/listed-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/listed-forces-test.dir/link.txt --verbose=1 /usr/bin/c++ -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/listed-forces-test.dir/bonded.cpp.o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/listed-forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a -lpthread /usr/lib/mpich/lib/libmpi.so -fopenmp /usr/lib/libtng_io.so.1.8.2 /usr/lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/liblmfit.so -lpthread /usr/lib/mpich/lib/libmpi.so In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/idef.h:43, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/settle.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/tests/settle.cpp:37: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const t_iparams&}; _Tp = t_iparams; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/idef.h:43, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/settle.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/tests/settle.cpp:37: /usr/include/c++/9/bits/stl_vector.h: In member function 'virtual void gmx::test::SettleTest_SatisfiesConstraints_Test::TestBody()': /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ [ 86%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/domdec/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/tests/localatomsetmanager.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 86%] Built target listed-forces-test make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' cd /builddir/build/BUILD/gromacs-2019.6/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/tests /builddir/build/BUILD/gromacs-2019.6/mpich_d /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/ewald/tests /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/ewald/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend.internal". Scanning dependencies of target ewald-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 87%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/tests/pmebsplinetest.cpp [ 87%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp [ 87%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/shake.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/tests/shake.cpp [ 87%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/tests/testasserts_tests.cpp [ 87%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/domdec/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 87%] Linking CXX executable ../../../../bin/domdec-test cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-test.dir/link.txt --verbose=1 /usr/bin/c++ -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/domdec-test.dir/hashedmap.cpp.o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/domdec-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a -lpthread /usr/lib/mpich/lib/libmpi.so -fopenmp /usr/lib/libtng_io.so.1.8.2 /usr/lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/liblmfit.so -lpthread /usr/lib/mpich/lib/libmpi.so In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/block.h:42, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/shake.h:48, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/tests/shake.cpp:37: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ [ 87%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 87%] Built target domdec-test [ 87%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmegathertest.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/tests/pmegathertest.cpp [ 87%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/tests/simulationsignal.cpp [ 87%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/tests/xvgtest_tests.cpp [ 87%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/tests/pmesolvetest.cpp [ 87%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 87%] Linking CXX executable ../../../bin/testutils-test cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 /usr/bin/c++ -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_mpich_d.a ../../../lib/libgmock.a -lpthread /usr/lib/mpich/lib/libmpi.so -fopenmp /usr/lib/libtng_io.so.1.8.2 /usr/lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/liblmfit.so -lpthread /usr/lib/mpich/lib/libmpi.so In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include/gtest/internal/gtest-port.h:279, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include/gtest/internal/gtest-linked_ptr.h:74, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include/gmock/internal/gmock-port.h:53, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include/gmock/internal/gmock-generated-internal-utils.h:44, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include/gmock/internal/gmock-internal-utils.h:45, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include/gmock/gmock-actions.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include/gmock/gmock.h:58, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/tests/pmegathertest.cpp:47: /usr/include/c++/9/bits/stl_vector.h: In constructor 'std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/stl_vector.h:622:7: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 622 | vector(initializer_list __l, | ^~~~~~ [ 87%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/updategroups.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/updategroups.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/tests/updategroups.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include/gtest/internal/gtest-port.h:279, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include/gtest/internal/gtest-linked_ptr.h:74, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include/gmock/internal/gmock-port.h:53, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include/gmock/internal/gmock-generated-internal-utils.h:44, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include/gmock/internal/gmock-internal-utils.h:45, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include/gmock/gmock-actions.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include/gmock/gmock.h:58, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/tests/pmegathertest.cpp:47: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = gmx::BasicVector; _Alloc = std::allocator >]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include/gtest/internal/gtest-port.h:279, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include/gtest/internal/gtest-linked_ptr.h:74, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include/gmock/internal/gmock-port.h:53, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include/gmock/internal/gmock-generated-internal-utils.h:44, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include/gmock/internal/gmock-internal-utils.h:45, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include/gmock/gmock-actions.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include/gmock/gmock.h:58, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/tests/pmegathertest.cpp:47: /usr/include/c++/9/bits/stl_vector.h: In static member function 'static void gmx::test::{anonymous}::PmeGatherTest::SetUpTestCase()': /usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 957 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 87%] Built target testutils-test make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' cd /builddir/build/BUILD/gromacs-2019.6/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fft/tests /builddir/build/BUILD/gromacs-2019.6/mpich_d /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/fft/tests /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/fft/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend.internal". Scanning dependencies of target fft-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 87%] Building CXX object src/gromacs/fft/tests/CMakeFiles/fft-test.dir/fft.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/fft/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fft-test.dir/fft.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fft/tests/fft.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/tests/pmegathertest.cpp: In function 'void __static_initialization_and_destruction_0(int, int)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/tests/pmegathertest.cpp:97:1: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 97 | }; | ^ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/tests/pmegathertest.cpp:165:1: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 165 | }; | ^ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/tests/pmegathertest.cpp:174:1: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 174 | }; | ^ In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/updategroups.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/tests/updategroups.cpp:44: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const t_iparams&}; _Tp = t_iparams; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/updategroups.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/tests/updategroups.cpp:44: /usr/include/c++/9/bits/stl_vector.h: In member function 'virtual void gmx::{anonymous}::UpdateGroups_butaneUA_Test::TestBody()': /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h: In member function 'virtual void gmx::{anonymous}::UpdateGroups_ethaneUA_Test::TestBody()': /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h: In member function 'virtual void gmx::{anonymous}::UpdateGroups_methane_Test::TestBody()': /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h: In member function 'virtual void gmx::{anonymous}::UpdateGroups_ethane_Test::TestBody()': /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ [ 87%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/tests/cmdlinemodulemanagertest.cpp /usr/include/c++/9/bits/stl_vector.h: In member function 'virtual void gmx::{anonymous}::UpdateGroups_waterThreeSite_Test::TestBody()': /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h: In member function 'virtual void gmx::{anonymous}::UpdateGroups_waterFourSite_Test::TestBody()': /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h: In member function 'virtual void gmx::{anonymous}::UpdateGroups_waterFlexAngle_Test::TestBody()': /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h: In member function 'virtual void gmx::{anonymous}::UpdateGroups_twoMoltypes_Test::TestBody()': /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ [ 87%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/tests/updategroupscog.cpp [ 87%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/tests/pmesplinespreadtest.cpp [ 87%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/tests/pmetestcommon.cpp [ 88%] Building CXX object src/gromacs/fft/tests/CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/fft/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/updategroupscog.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/tests/updategroupscog.cpp:37: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const t_iparams&}; _Tp = t_iparams; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/updategroupscog.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/tests/updategroupscog.cpp:37: /usr/include/c++/9/bits/stl_vector.h: In member function 'virtual void gmx::{anonymous}::UpdateGroupsCog_ComputesCogs_Test::TestBody()': /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/tests/updategroupscog.cpp:173:28: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 173 | updateGroupsCog.addCogs(globalAtomIndices, positions); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/tests/updategroupscog.cpp:173:28: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 [ 88%] Linking CXX executable ../../../../bin/fft-test cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 /usr/bin/c++ -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a -lpthread /usr/lib/mpich/lib/libmpi.so -fopenmp /usr/lib/libtng_io.so.1.8.2 /usr/lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/liblmfit.so -lpthread /usr/lib/mpich/lib/libmpi.so [ 88%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 88%] Built target fft-test make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' cd /builddir/build/BUILD/gromacs-2019.6/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/tests /builddir/build/BUILD/gromacs-2019.6/mpich_d /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/gpu_utils/tests /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/gpu_utils/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend.internal". Scanning dependencies of target gpu_utils-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 88%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/gputest.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem 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-D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/mdebin.cpp.o CMakeFiles/mdlib-test.dir/settle.cpp.o CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/updategroups.cpp.o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdlib-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a -lpthread /usr/lib/mpich/lib/libmpi.so -fopenmp /usr/lib/libtng_io.so.1.8.2 /usr/lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/liblmfit.so -lpthread /usr/lib/mpich/lib/libmpi.so [ 88%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/tests/testhardwarecontexts.cpp [ 88%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/tests/hostallocator.cpp In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include/gtest/internal/gtest-port.h:279, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include/gtest/internal/gtest-linked_ptr.h:74, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include/gmock/internal/gmock-port.h:53, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include/gmock/internal/gmock-generated-internal-utils.h:44, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include/gmock/internal/gmock-internal-utils.h:45, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include/gmock/gmock-actions.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include/gmock/gmock.h:58, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/tests/pmesplinespreadtest.cpp:47: /usr/include/c++/9/bits/stl_vector.h: In constructor 'std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = __gnu_cxx::__normal_iterator*, std::vector > >; = void; _Tp = gmx::BasicVector; _Alloc = std::allocator >]': /usr/include/c++/9/bits/stl_vector.h:650:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 650 | vector(_InputIterator __first, _InputIterator __last, | ^~~~~~ /usr/include/c++/9/bits/stl_vector.h:650:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/tests/pmesplinespreadtest.cpp: In function 'void __static_initialization_and_destruction_0(int, int)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/tests/pmesplinespreadtest.cpp:326:114: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 326 | CoordinatesVector const c_sampleCoordinates1(c_sampleCoordinatesFull.begin(), c_sampleCoordinatesFull.begin() + 1); | ^ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/tests/pmesplinespreadtest.cpp:328:118: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 328 | CoordinatesVector const c_sampleCoordinates2(c_sampleCoordinatesFull.begin() + 1, c_sampleCoordinatesFull.begin() + 3); | ^ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/tests/pmesplinespreadtest.cpp:330:120: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 330 | CoordinatesVector const c_sampleCoordinates13(c_sampleCoordinatesFull.begin() + 3, c_sampleCoordinatesFull.begin() + 16); | ^ [ 88%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/tests/devicetransfers.cpp [ 88%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/tests/cmdlineparser.cpp [ 88%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 88%] Built target mdlib-test make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' cd /builddir/build/BUILD/gromacs-2019.6/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/tests /builddir/build/BUILD/gromacs-2019.6/mpich_d /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/hardware/tests /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/hardware/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend.internal". Scanning dependencies of target hardware-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 88%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/cpuinfo.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/hardware/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/hardware-test.dir/cpuinfo.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/tests/cpuinfo.cpp [ 88%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/hardware/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/tests/hardwaretopology.cpp [ 89%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/hardware/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 89%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' cd /builddir/build/BUILD/gromacs-2019.6/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests /builddir/build/BUILD/gromacs-2019.6/mpich_d /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/math/tests /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/math/tests/CMakeFiles/math-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/math/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/math/tests/CMakeFiles/math-test.dir/depend.internal". Scanning dependencies of target math-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 89%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/arrayrefwithpadding.cpp [ 89%] Linking CXX executable ../../../../bin/ewald-test cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 /usr/bin/c++ -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/ewald-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a -lpthread /usr/lib/mpich/lib/libmpi.so -fopenmp /usr/lib/libtng_io.so.1.8.2 /usr/lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/liblmfit.so -lpthread /usr/lib/mpich/lib/libmpi.so [ 89%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp [ 89%] Linking CXX executable ../../../../bin/hardware-test cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 /usr/bin/c++ -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/hardware-test.dir/cpuinfo.cpp.o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a -lpthread /usr/lib/mpich/lib/libmpi.so -fopenmp /usr/lib/libtng_io.so.1.8.2 /usr/lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/liblmfit.so -lpthread /usr/lib/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 89%] Built target hardware-test make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' cd /builddir/build/BUILD/gromacs-2019.6/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2019.6/mpich_d /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/mdrunutility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend.internal". Scanning dependencies of target mdrunutility-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 89%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrunutility/tests/threadaffinity-mpi.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 89%] Built target ewald-test make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' cd /builddir/build/BUILD/gromacs-2019.6/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2019.6/mpich_d /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/mdrunutility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend.internal". Scanning dependencies of target mdrunutility-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 89%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrunutility/tests/threadaffinity.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/arrayref.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/arrayrefwithpadding.h:49, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/arrayrefwithpadding.cpp:43: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = gmx::Allocator]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/arrayref.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/arrayrefwithpadding.h:49, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/arrayrefwithpadding.cpp:43: /usr/include/c++/9/bits/stl_vector.h: In member function 'testing::Test* testing::internal::TestFactoryImpl::CreateTest() [with TestClass = gmx::{anonymous}::ArrayRefWithPaddingTest_ConstructFromPointersWorks_Test >]': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h: In member function 'testing::Test* testing::internal::TestFactoryImpl::CreateTest() [with TestClass = gmx::{anonymous}::ArrayRefWithPaddingTest_AssignFromPaddedVectorWorks_Test >]': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ [ 89%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/pargs.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/pargs.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/tests/pargs.cpp [ 90%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/dofit.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/dofit.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/dofit.cpp [ 90%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 90%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/hostallocator.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/tests/hostallocator.cpp:43: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = gmx::Allocator]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/hostallocator.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/tests/hostallocator.cpp:43: /usr/include/c++/9/bits/stl_vector.h: In member function 'void gmx::test::HostAllocatorTestCopyable_VectorsWithDefaultHostAllocatorAlwaysWorks_Test::TestBody() [with gtest_TypeParam_ = double]': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/hostallocator.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/tests/hostallocator.cpp:43: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = gmx::BasicVector; _Alloc = gmx::Allocator, gmx::HostAllocationPolicy>]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector, gmx::Allocator, gmx::HostAllocationPolicy> >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::HostAllocationPolicy> > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ [ 90%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/functions.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/functions.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/functions.cpp [ 90%] Linking CXX executable ../../../../bin/mdrunutility-mpi-test cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a -lpthread /usr/lib/mpich/lib/libmpi.so -fopenmp /usr/lib/libtng_io.so.1.8.2 /usr/lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/liblmfit.so -lpthread /usr/lib/mpich/lib/libmpi.so In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/hostallocator.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/tests/hostallocator.cpp:43: /usr/include/c++/9/bits/stl_vector.h: In member function 'void gmx::test::HostAllocatorTestCopyable_VectorsWithDefaultHostAllocatorAlwaysWorks_Test::TestBody() [with gtest_TypeParam_ = gmx::BasicVector]': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::HostAllocationPolicy> > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::HostAllocationPolicy> > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ [ 90%] Linking CXX executable ../../../../bin/mdrunutility-test cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 /usr/bin/c++ -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a -lpthread /usr/lib/mpich/lib/libmpi.so -fopenmp /usr/lib/libtng_io.so.1.8.2 /usr/lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/liblmfit.so -lpthread /usr/lib/mpich/lib/libmpi.so [ 90%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 90%] Built target mdrunutility-test make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' cd /builddir/build/BUILD/gromacs-2019.6/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2019.6/mpich_d /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/onlinehelp/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend.internal". Scanning dependencies of target onlinehelp-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 90%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/tests/helpformat.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 90%] Built target mdrunutility-mpi-test make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' cd /builddir/build/BUILD/gromacs-2019.6/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/tests /builddir/build/BUILD/gromacs-2019.6/mpich_d /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/options/tests /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/options/tests/CMakeFiles/options-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/options/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/options/tests/CMakeFiles/options-test.dir/depend.internal". Scanning dependencies of target options-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 90%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/tests/abstractoptionstorage.cpp /usr/include/c++/9/bits/stl_vector.h: In function 'void gmx::test::fillInput(PaddedVectorOfT*, int) [with PaddedVectorOfT = gmx::PaddedVector >]': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h: In function 'void gmx::test::fillInput(PaddedVectorOfT*, int) [with PaddedVectorOfT = gmx::PaddedVector, gmx::Allocator, gmx::HostAllocationPolicy> >]': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::HostAllocationPolicy> > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include/gtest/gtest.h:56, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/functions.cpp:49: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ [ 91%] Linking CXX executable ../../../../bin/commandline-test cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 /usr/bin/c++ -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o CMakeFiles/commandline-test.dir/pargs.cpp.o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/commandline-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a -lpthread /usr/lib/mpich/lib/libmpi.so -fopenmp /usr/lib/libtng_io.so.1.8.2 /usr/lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/liblmfit.so -lpthread /usr/lib/mpich/lib/libmpi.so In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/tests/hostallocator.cpp:57: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/testarrayrefs.h: In function 'void gmx::test::compareViews(gmx::ArrayRef, gmx::ArrayRef) [with T = double]': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/testarrayrefs.h:97:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 97 | void compareViews(ArrayRef input, | ^~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/testarrayrefs.h:97:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/tests/hostallocator.cpp: In function 'void gmx::test::runTest(const gmx_gpu_info_t&, gmx::ArrayRef, gmx::ArrayRef) [with T = double]': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/tests/hostallocator.cpp:99:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 99 | void runTest(const gmx_gpu_info_t &gpuInfo, | ^~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/tests/hostallocator.cpp:99:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/hostallocator.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/tests/hostallocator.cpp:43: /usr/include/c++/9/bits/stl_vector.h: In member function 'void gmx::test::HostAllocatorTestCopyable_TransfersWithoutPinningWork_Test::TestBody() [with gtest_TypeParam_ = double]': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/tests/hostallocator.cpp:204:12: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 204 | runTest(*this->gpuInfo_, makeArrayRef(input), makeArrayRef(output)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/tests/hostallocator.cpp:204:12: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/tests/hostallocator.cpp:204:12: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/tests/hostallocator.cpp:57: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/testarrayrefs.h: In function 'void gmx::test::compareViews(gmx::ArrayRef >, gmx::ArrayRef >) [with T = double]': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/testarrayrefs.h:109:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 109 | void compareViews(ArrayRef < BasicVector < T>> input, | ^~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/testarrayrefs.h:109:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/tests/hostallocator.cpp: In function 'void gmx::test::runTest(const gmx_gpu_info_t&, gmx::ArrayRef, gmx::ArrayRef) [with T = gmx::BasicVector]': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/tests/hostallocator.cpp:99:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 99 | void runTest(const gmx_gpu_info_t &gpuInfo, | ^~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/tests/hostallocator.cpp:99:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/hostallocator.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/tests/hostallocator.cpp:43: /usr/include/c++/9/bits/stl_vector.h: In member function 'void gmx::test::HostAllocatorTestCopyable_TransfersWithoutPinningWork_Test::TestBody() [with gtest_TypeParam_ = gmx::BasicVector]': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::HostAllocationPolicy> > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/tests/hostallocator.cpp:204:12: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 204 | runTest(*this->gpuInfo_, makeArrayRef(input), makeArrayRef(output)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/tests/hostallocator.cpp:204:12: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/tests/hostallocator.cpp:204:12: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 [ 91%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/tests/helpmanager.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 91%] Built target commandline-test [ 91%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoption.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/tests/filenameoption.cpp [ 91%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/invertmatrix.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/invertmatrix.cpp [ 91%] Linking CXX executable ../../../../bin/gpu_utils-test cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 /usr/bin/c++ -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/gpu_utils-test.dir/gputest.cpp.o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gpu_utils-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a -lpthread /usr/lib/mpich/lib/libmpi.so -fopenmp /usr/lib/libtng_io.so.1.8.2 /usr/lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/liblmfit.so -lpthread /usr/lib/mpich/lib/libmpi.so [ 91%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/tests/helpwritercontext.cpp [ 91%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/paddedvector.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/paddedvector.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/paddedvector.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 91%] Built target gpu_utils-test make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' cd /builddir/build/BUILD/gromacs-2019.6/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tests /builddir/build/BUILD/gromacs-2019.6/mpich_d /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/random/tests /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/random/tests/CMakeFiles/random-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/random/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/random/tests/CMakeFiles/random-test.dir/depend.internal". Scanning dependencies of target random-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 91%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/exponentialdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/exponentialdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tests/exponentialdistribution.cpp [ 91%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/tests/filenameoptionmanager.cpp [ 91%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include/gtest/gtest.h:56, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tests/exponentialdistribution.cpp:45: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'virtual void gmx::{anonymous}::ExponentialDistributionTest_Output_Test::TestBody()': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ [ 91%] Linking CXX executable ../../../../bin/onlinehelp-test cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 /usr/bin/c++ -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/onlinehelp-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a -lpthread /usr/lib/mpich/lib/libmpi.so -fopenmp /usr/lib/libtng_io.so.1.8.2 /usr/lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/liblmfit.so -lpthread /usr/lib/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 91%] Built target onlinehelp-test make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' cd /builddir/build/BUILD/gromacs-2019.6/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/restraint/tests /builddir/build/BUILD/gromacs-2019.6/mpich_d /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/restraint/tests /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/restraint/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend.internal". Scanning dependencies of target restraintpotential-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 91%] Building CXX object src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/manager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/restraint/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/restraint/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/restraintpotential-test.dir/manager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/restraint/tests/manager.cpp [ 91%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/gammadistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tests/gammadistribution.cpp [ 91%] Building CXX object src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/restraint/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/restraint/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 91%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/option.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/option.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/tests/option.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include/gtest/gtest.h:56, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tests/gammadistribution.cpp:45: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ [ 91%] Linking CXX executable ../../../../bin/restraintpotential-test cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 /usr/bin/c++ -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/restraintpotential-test.dir/manager.cpp.o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/restraintpotential-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a -lpthread /usr/lib/mpich/lib/libmpi.so -fopenmp /usr/lib/libtng_io.so.1.8.2 /usr/lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/liblmfit.so -lpthread /usr/lib/mpich/lib/libmpi.so /usr/include/c++/9/bits/vector.tcc: In member function 'virtual void gmx::{anonymous}::GammaDistributionTest_Output_Test::TestBody()': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 91%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/optionsassigner.cpp.o [ 91%] Built target restraintpotential-test make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/tests/optionsassigner.cpp make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' cd /builddir/build/BUILD/gromacs-2019.6/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests /builddir/build/BUILD/gromacs-2019.6/mpich_d /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/tables/tests /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/tables/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend.internal". Scanning dependencies of target table-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 91%] Building CXX object src/gromacs/tables/tests/CMakeFiles/table-test.dir/splinetable.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/tables/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/table-test.dir/splinetable.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp [ 91%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/repeatingsection.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/tests/repeatingsection.cpp [ 91%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/normaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tests/normaldistribution.cpp In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/paddedvector.cpp:59: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/testarrayrefs.h: In function 'void gmx::test::fillInputContents(gmx::ArrayRef >, int) [with T = double]': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/testarrayrefs.h:70:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 70 | void fillInputContents(ArrayRef < BasicVector < T>> inputRef, | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include/gtest/gtest.h:56, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tests/normaldistribution.cpp:45: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'virtual void gmx::{anonymous}::NormalDistributionTest_Output_Test::TestBody()': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/paddedvector.cpp:47: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/paddedvector.cpp:47: /usr/include/c++/9/bits/stl_vector.h: In function 'void gmx::test::fillInput(PaddedVectorOfT*, int) [with PaddedVectorOfT = gmx::PaddedVector >]': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/paddedvector.cpp:47: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = gmx::BasicVector; _Alloc = gmx::Allocator, gmx::AlignedAllocationPolicy>]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/paddedvector.cpp:47: /usr/include/c++/9/bits/stl_vector.h: In function 'void gmx::test::fillInput(PaddedVectorOfT*, int) [with PaddedVectorOfT = gmx::PaddedVector, gmx::Allocator, gmx::AlignedAllocationPolicy> >]': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, gmx::Allocator, gmx::AlignedAllocationPolicy> > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ [ 91%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/seed.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/seed.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tests/seed.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/paddedvector.cpp:47: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = gmx::Allocator]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/paddedvector.cpp:47: /usr/include/c++/9/bits/stl_vector.h: In function 'void gmx::test::fillInput(PaddedVectorOfT*, int) [with PaddedVectorOfT = gmx::PaddedVector >]': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/paddedvector.cpp:47: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = gmx::BasicVector; _Alloc = std::allocator >]': /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/paddedvector.h:47, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/paddedvector.cpp:47: /usr/include/c++/9/bits/stl_vector.h: In function 'void gmx::test::fillInput(PaddedVectorOfT*, int) [with PaddedVectorOfT = gmx::PaddedVector, std::allocator > >]': /usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1335 | _M_fill_insert(begin() + __offset, __n, __x); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp: In member function 'void gmx::test::{anonymous}::SplineTableTest_NumericalInputPmeCorr_Test::TestBody() [with gtest_TypeParam_ = gmx::QuadraticSplineTable]': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:517:16: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 517 | TypeParam pmeCorrTable( {{"NumericalPMECorr", functionValues, derivativeValues, inputSpacing}}, | ^~~~~~~~~~~~ [ 92%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tests/tabulatednormaldistribution.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp: In member function 'void gmx::test::{anonymous}::SplineTableTest_NumericalInputPmeCorr_Test::TestBody() [with gtest_TypeParam_ = gmx::CubicSplineTable]': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:517:16: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 517 | TypeParam pmeCorrTable( {{"NumericalPMECorr", functionValues, derivativeValues, inputSpacing}}, | ^~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include/gtest/gtest.h:56, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:50: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include/gtest/gtest.h:58, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:50: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp: In member function 'void gmx::test::{anonymous}::SplineTableTest_HandlesIncorrectNumericalInput_Test::TestBody() [with gtest_TypeParam_ = gmx::QuadraticSplineTable]': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:461:22: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 461 | EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.001}}, | ^~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/testutils/testasserts.h:176:5: note: in expansion of macro 'GMX_TEST_THROW_' 176 | GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:461:5: note: in expansion of macro 'EXPECT_THROW_GMX' 461 | EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.001}}, | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:467:22: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 467 | EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.1}}, | ^~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/testutils/testasserts.h:176:5: note: in expansion of macro 'GMX_TEST_THROW_' 176 | GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:467:5: note: in expansion of macro 'EXPECT_THROW_GMX' 467 | EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.1}}, | ^~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include/gtest/gtest.h:56, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:50: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include/gtest/gtest.h:58, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:50: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:489:22: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 489 | EXPECT_THROW_GMX(TypeParam( {{"NumericalBadLJ12", functionValues, badDerivativeValues, spacing}}, | ^~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/testutils/testasserts.h:176:5: note: in expansion of macro 'GMX_TEST_THROW_' 176 | GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:489:5: note: in expansion of macro 'EXPECT_THROW_GMX' 489 | EXPECT_THROW_GMX(TypeParam( {{"NumericalBadLJ12", functionValues, badDerivativeValues, spacing}}, | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:494:22: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 494 | EXPECT_THROW_GMX(TypeParam( {{"NumericalLJ12", functionValues, derivativeValues, spacing}}, | ^~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/testutils/testasserts.h:176:5: note: in expansion of macro 'GMX_TEST_THROW_' 176 | GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:494:5: note: in expansion of macro 'EXPECT_THROW_GMX' 494 | EXPECT_THROW_GMX(TypeParam( {{"NumericalLJ12", functionValues, derivativeValues, spacing}}, | ^~~~~~~~~~~~~~~~ [ 92%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/timeunitmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/tests/timeunitmanager.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp: In member function 'void gmx::test::{anonymous}::SplineTableTest_HandlesIncorrectNumericalInput_Test::TestBody() [with gtest_TypeParam_ = gmx::CubicSplineTable]': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:461:22: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 461 | EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.001}}, | ^~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/testutils/testasserts.h:176:5: note: in expansion of macro 'GMX_TEST_THROW_' 176 | GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:461:5: note: in expansion of macro 'EXPECT_THROW_GMX' 461 | EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.001}}, | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:467:22: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 467 | EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.1}}, | ^~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/testutils/testasserts.h:176:5: note: in expansion of macro 'GMX_TEST_THROW_' 176 | GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:467:5: note: in expansion of macro 'EXPECT_THROW_GMX' 467 | EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.1}}, | ^~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include/gtest/gtest.h:56, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:50: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include/gtest/gtest.h:58, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:50: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:489:22: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 489 | EXPECT_THROW_GMX(TypeParam( {{"NumericalBadLJ12", functionValues, badDerivativeValues, spacing}}, | ^~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/testutils/testasserts.h:176:5: note: in expansion of macro 'GMX_TEST_THROW_' 176 | GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:489:5: note: in expansion of macro 'EXPECT_THROW_GMX' 489 | EXPECT_THROW_GMX(TypeParam( {{"NumericalBadLJ12", functionValues, badDerivativeValues, spacing}}, | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:494:22: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 494 | EXPECT_THROW_GMX(TypeParam( {{"NumericalLJ12", functionValues, derivativeValues, spacing}}, | ^~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/testutils/testasserts.h:176:5: note: in expansion of macro 'GMX_TEST_THROW_' 176 | GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/tests/splinetable.cpp:494:5: note: in expansion of macro 'EXPECT_THROW_GMX' 494 | EXPECT_THROW_GMX(TypeParam( {{"NumericalLJ12", functionValues, derivativeValues, spacing}}, | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/paddedvector.cpp:59: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/testarrayrefs.h: In function 'void gmx::test::compareViews(gmx::ArrayRef, gmx::ArrayRef) [with T = double]': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/testarrayrefs.h:97:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 97 | void compareViews(ArrayRef input, | ^~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/testarrayrefs.h:97:6: note: parameter passing for argument of type 'gmx::ArrayRef' changed in GCC 7.1 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/testarrayrefs.h: In function 'void gmx::test::compareViews(gmx::ArrayRef >, gmx::ArrayRef >) [with T = double]': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/testarrayrefs.h:109:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 109 | void compareViews(ArrayRef < BasicVector < T>> input, | ^~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/testarrayrefs.h:109:6: note: parameter passing for argument of type 'gmx::ArrayRef >' changed in GCC 7.1 In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include/gtest/gtest.h:56, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tests/tabulatednormaldistribution.cpp:45: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'virtual void gmx::{anonymous}::TabulatedNormalDistributionTest_OutputDouble14_Test::TestBody()': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ [ 92%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/threefry.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/threefry.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tests/threefry.cpp [ 92%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/treesupport.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/tests/treesupport.cpp [ 92%] Building CXX object src/gromacs/tables/tests/CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/tables/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 92%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/vectypes.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/vectypes.cpp [ 92%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' cd /builddir/build/BUILD/gromacs-2019.6/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/tests /builddir/build/BUILD/gromacs-2019.6/mpich_d /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/taskassignment/tests /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/taskassignment/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend.internal". Scanning dependencies of target taskassignment-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 93%] Building CXX object src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/tests/usergpuids.cpp In file included from /usr/include/c++/9/vector:67, from /usr/include/c++/9/bits/random.h:34, from /usr/include/c++/9/random:49, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/seed.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/threefry.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tests/threefry.cpp:43: /usr/include/c++/9/bits/stl_vector.h: In constructor 'std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/include/c++/9/bits/stl_vector.h:622:7: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 622 | vector(initializer_list __l, | ^~~~~~ In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/tests/vectypes.cpp:50: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double (&)[3]}; _Tp = gmx::BasicVector; _Alloc = std::allocator >]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ [ 93%] Linking CXX executable ../../../../bin/table-test cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 /usr/bin/c++ -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/table-test.dir/splinetable.cpp.o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/table-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a -lpthread /usr/lib/mpich/lib/libmpi.so -fopenmp /usr/lib/libtng_io.so.1.8.2 /usr/lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/liblmfit.so -lpthread /usr/lib/mpich/lib/libmpi.so /usr/include/c++/9/bits/vector.tcc: In member function 'virtual void {anonymous}::RVecTest_ConvertsImplicitlyFrom_rvec_Test::TestBody()': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 93%] Built target table-test make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' cd /builddir/build/BUILD/gromacs-2019.6/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2019.6/mpich_d /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/utility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend.internal". Scanning dependencies of target utility-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 93%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator-mpi.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator-mpi.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests/physicalnodecommunicator-mpi.cpp /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tests/threefry.cpp: In function 'void __static_initialization_and_destruction_0(int, int)': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tests/threefry.cpp:119:40: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 119 | }}; | ^ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tests/threefry.cpp:131:39: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 131 | }}; | ^ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tests/threefry.cpp:142:38: note: parameter passing for argument of type 'std::initializer_list' changed in GCC 7.1 142 | }}; | ^ [ 93%] Linking CXX executable ../../../../bin/math-test cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 [ 93%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp /usr/bin/c++ -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o CMakeFiles/math-test.dir/dofit.cpp.o CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/paddedvector.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a -lpthread /usr/lib/mpich/lib/libmpi.so -fopenmp /usr/lib/libtng_io.so.1.8.2 /usr/lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/liblmfit.so -lpthread /usr/lib/mpich/lib/libmpi.so [ 93%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/uniformintdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tests/uniformintdistribution.cpp [ 93%] Linking CXX executable ../../../../bin/utility-mpi-test cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator-mpi.cpp.o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a -lpthread /usr/lib/mpich/lib/libmpi.so -fopenmp /usr/lib/libtng_io.so.1.8.2 /usr/lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/liblmfit.so -lpthread /usr/lib/mpich/lib/libmpi.so [ 94%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 94%] Built target math-test make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' cd /builddir/build/BUILD/gromacs-2019.6/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2019.6/mpich_d /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/utility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend.internal". Scanning dependencies of target utility-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 95%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/alignedallocator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests/alignedallocator.cpp [ 95%] Building CXX object src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 95%] Built target utility-mpi-test make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' cd /builddir/build/BUILD/gromacs-2019.6/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/tests /builddir/build/BUILD/gromacs-2019.6/mpich_d /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/fileio/tests /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/fileio/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend.internal". Scanning dependencies of target fileio-test [ 95%] Linking CXX executable ../../../../bin/options-test cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/options/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/options-test.dir/link.txt --verbose=1 make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' /usr/bin/c++ -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o CMakeFiles/options-test.dir/filenameoption.cpp.o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o CMakeFiles/options-test.dir/option.cpp.o CMakeFiles/options-test.dir/optionsassigner.cpp.o CMakeFiles/options-test.dir/repeatingsection.cpp.o CMakeFiles/options-test.dir/timeunitmanager.cpp.o CMakeFiles/options-test.dir/treesupport.cpp.o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/options-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a -lpthread /usr/lib/mpich/lib/libmpi.so -fopenmp /usr/lib/libtng_io.so.1.8.2 /usr/lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/liblmfit.so -lpthread /usr/lib/mpich/lib/libmpi.so [ 95%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/confio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/confio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/tests/confio.cpp [ 95%] Linking CXX executable ../../../../bin/taskassignment-test cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 /usr/bin/c++ -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/taskassignment-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a -lpthread /usr/lib/mpich/lib/libmpi.so -fopenmp /usr/lib/libtng_io.so.1.8.2 /usr/lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/liblmfit.so -lpthread /usr/lib/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 95%] Built target options-test [ 95%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/arrayref.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests/arrayref.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 95%] Built target taskassignment-test make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' cd /builddir/build/BUILD/gromacs-2019.6/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/tests /builddir/build/BUILD/gromacs-2019.6/mpich_d /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/pulling/tests /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/pulling/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend.internal". In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/tests/confio.cpp:48: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {int, int, int}; _Tp = gmx::BasicVector; _Alloc = std::allocator >]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ Scanning dependencies of target pull-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 95%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tests/uniformrealdistribution.cpp [ 95%] Building CXX object src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/pull.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/pulling/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/pull-test.dir/pull.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/tests/pull.cpp /usr/include/c++/9/bits/vector.tcc: In member function 'testing::Test* testing::internal::ParameterizedTestFactory::CreateTest() [with TestClass = {anonymous}::StructureIORoundtripTest_ReadWriteTpsConf_Test]': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ [ 95%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/filemd5.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/filemd5.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/tests/filemd5.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include/gtest/gtest.h:56, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tests/uniformrealdistribution.cpp:45: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ [ 95%] Building CXX object src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/pulling/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 95%] Linking CXX executable ../../../../bin/pull-test cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 /usr/bin/c++ -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/pull-test.dir/pull.cpp.o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pull-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a -lpthread /usr/lib/mpich/lib/libmpi.so -fopenmp /usr/lib/libtng_io.so.1.8.2 /usr/lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/liblmfit.so -lpthread /usr/lib/mpich/lib/libmpi.so [ 95%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/readinp.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/tests/readinp.cpp [ 95%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 95%] Linking CXX executable ../../../../bin/random-test cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 /usr/bin/c++ -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/random-test.dir/exponentialdistribution.cpp.o CMakeFiles/random-test.dir/gammadistribution.cpp.o CMakeFiles/random-test.dir/normaldistribution.cpp.o CMakeFiles/random-test.dir/seed.cpp.o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o CMakeFiles/random-test.dir/threefry.cpp.o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/random-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a -lpthread /usr/lib/mpich/lib/libmpi.so -fopenmp /usr/lib/libtng_io.so.1.8.2 /usr/lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/liblmfit.so -lpthread /usr/lib/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 95%] Built target pull-test make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' cd /builddir/build/BUILD/gromacs-2019.6/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/tests /builddir/build/BUILD/gromacs-2019.6/mpich_d /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/awh/tests /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/awh/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend.internal". Scanning dependencies of target awh-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 95%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/bias.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/bias.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/tests/bias.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 95%] Built target random-test make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' cd /builddir/build/BUILD/gromacs-2019.6/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/tests /builddir/build/BUILD/gromacs-2019.6/mpich_d /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/simd/tests /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/simd/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend.internal". [ 95%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask32.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests/bitmask32.cpp Scanning dependencies of target simd-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build [ 95%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/tngio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/tngio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/tests/tngio.cpp make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 95%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/tests/bootstrap_loadstore.cpp [ 95%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/base.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/base.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/tests/base.cpp [ 95%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/tests/bias.cpp:37: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double&, double&, double&}; _Tp = gmx::DimParams; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In function 'gmx::test::AwhTestParameters gmx::test::getAwhTestParameters(int, int)': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 [ 95%] Linking CXX executable ../../../../bin/fileio-test cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/fileio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileio-test.dir/link.txt --verbose=1 /usr/bin/c++ -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/fileio-test.dir/confio.cpp.o CMakeFiles/fileio-test.dir/filemd5.cpp.o CMakeFiles/fileio-test.dir/readinp.cpp.o CMakeFiles/fileio-test.dir/tngio.cpp.o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fileio-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a -lpthread /usr/lib/mpich/lib/libmpi.so -fopenmp /usr/lib/libtng_io.so.1.8.2 /usr/lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/liblmfit.so -lpthread /usr/lib/mpich/lib/libmpi.so /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/tests/bias.cpp:37: /usr/include/c++/9/bits/stl_vector.h: In member function 'virtual void gmx::test::BiasTest_ForcesBiasPmf_Test::TestBody()': /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ [ 95%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/tests/simd.cpp [ 96%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/tests/simd_floatingpoint.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 96%] Built target fileio-test [ 96%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/tests/simd_floatingpoint_util.cpp [ 96%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/tests/simd_vector_operations.cpp [ 96%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_math.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_math.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/tests/simd_math.cpp [ 96%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_memory.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/tests/simd_memory.cpp [ 96%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_integer.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_integer.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/tests/simd_integer.cpp [ 96%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/tests/simd4.cpp [ 96%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/tests/simd4_floatingpoint.cpp [ 96%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/tests/simd4_vector_operations.cpp [ 96%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/biasstate.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/tests/biasstate.cpp [ 97%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_math.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4_math.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/tests/simd4_math.cpp [ 97%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/scalar.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/tests/scalar.cpp [ 97%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_util.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/scalar_util.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/tests/scalar_util.cpp [ 97%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_math.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/scalar_math.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/tests/scalar_math.cpp In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.h:57, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/tests/biasstate.cpp:37: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double, double, double&}; _Tp = gmx::DimParams; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double, double, double&}; _Tp = gmx::DimParams; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ [ 97%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/grid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/grid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/tests/grid.cpp [ 97%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 97%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 97%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask64.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests/bitmask64.cpp [ 97%] Linking CXX executable ../../../../bin/simd-test cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/simd/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/simd-test.dir/link.txt --verbose=1 In file included from /usr/include/c++/9/vector:72, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/dimparams.h:52, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/grid.h:60, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/tests/grid.cpp:37: /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&, double, const double&}; _Tp = gmx::DimParams; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/bin/c++ -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o CMakeFiles/simd-test.dir/base.cpp.o CMakeFiles/simd-test.dir/simd.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd_math.cpp.o CMakeFiles/simd-test.dir/simd_memory.cpp.o CMakeFiles/simd-test.dir/simd_integer.cpp.o CMakeFiles/simd-test.dir/simd4.cpp.o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd4_math.cpp.o CMakeFiles/simd-test.dir/scalar.cpp.o CMakeFiles/simd-test.dir/scalar_util.cpp.o CMakeFiles/simd-test.dir/scalar_math.cpp.o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/simd-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a -lpthread /usr/lib/mpich/lib/libmpi.so -fopenmp /usr/lib/libtng_io.so.1.8.2 /usr/lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/liblmfit.so -lpthread /usr/lib/mpich/lib/libmpi.so /usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const double&, double, const double&}; _Tp = gmx::DimParams; _Alloc = std::allocator]': /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ [ 97%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask128.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests/bitmask128.cpp [ 97%] Linking CXX executable ../../../../bin/awh-test cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 /usr/bin/c++ -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/awh-test.dir/bias.cpp.o CMakeFiles/awh-test.dir/biasstate.cpp.o CMakeFiles/awh-test.dir/grid.cpp.o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/awh-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a -lpthread /usr/lib/mpich/lib/libmpi.so -fopenmp /usr/lib/libtng_io.so.1.8.2 /usr/lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/liblmfit.so -lpthread /usr/lib/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 97%] Built target simd-test [ 97%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests/keyvaluetreeserializer.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 97%] Built target awh-test [ 97%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests/keyvaluetreetransform.cpp [ 97%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/gmxregex.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/gmxregex.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests/gmxregex.cpp [ 97%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/logger.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/logger.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests/logger.cpp [ 98%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/mutex.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/mutex.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests/mutex.cpp [ 98%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/path.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/path.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests/path.cpp [ 98%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests/physicalnodecommunicator.cpp [ 98%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/stringutil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/stringutil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests/stringutil.cpp [ 98%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/textreader.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/textreader.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests/textreader.cpp [ 98%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/textwriter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/textwriter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests/textwriter.cpp [ 98%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/typetraits.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/typetraits.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/tests/typetraits.cpp [ 98%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-arm -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [100%] Linking CXX executable ../../../../bin/utility-test cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-test.dir/link.txt --verbose=1 /usr/bin/c++ -fexceptions -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/utility-test.dir/alignedallocator.cpp.o CMakeFiles/utility-test.dir/arrayref.cpp.o CMakeFiles/utility-test.dir/bitmask32.cpp.o CMakeFiles/utility-test.dir/bitmask64.cpp.o CMakeFiles/utility-test.dir/bitmask128.cpp.o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o CMakeFiles/utility-test.dir/gmxregex.cpp.o CMakeFiles/utility-test.dir/logger.cpp.o CMakeFiles/utility-test.dir/mutex.cpp.o CMakeFiles/utility-test.dir/path.cpp.o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o CMakeFiles/utility-test.dir/stringutil.cpp.o CMakeFiles/utility-test.dir/textreader.cpp.o CMakeFiles/utility-test.dir/textwriter.cpp.o CMakeFiles/utility-test.dir/typetraits.cpp.o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a -lpthread /usr/lib/mpich/lib/libmpi.so -fopenmp /usr/lib/libtng_io.so.1.8.2 /usr/lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/liblmfit.so -lpthread /usr/lib/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [100%] Built target utility-test make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' cd /builddir/build/BUILD/gromacs-2019.6/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/mpich_d /builddir/build/BUILD/gromacs-2019.6/mpich_d /builddir/build/BUILD/gromacs-2019.6/mpich_d/CMakeFiles/tests.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/CMakeFiles/tests.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/CMakeFiles/tests.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/CMakeFiles/tests.dir/depend.internal". Scanning dependencies of target tests make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[3]: Nothing to be done for 'CMakeFiles/tests.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [100%] Built target tests make -f CMakeFiles/run-ctest-nophys.dir/build.make CMakeFiles/run-ctest-nophys.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' cd /builddir/build/BUILD/gromacs-2019.6/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/mpich_d /builddir/build/BUILD/gromacs-2019.6/mpich_d /builddir/build/BUILD/gromacs-2019.6/mpich_d/CMakeFiles/run-ctest-nophys.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/CMakeFiles/run-ctest-nophys.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/CMakeFiles/run-ctest-nophys.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/CMakeFiles/run-ctest-nophys.dir/depend.internal". Scanning dependencies of target run-ctest-nophys make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make -f CMakeFiles/run-ctest-nophys.dir/build.make CMakeFiles/run-ctest-nophys.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [100%] Running all tests except physical validation /usr/bin/ctest --output-on-failure -E physicalvalidationtests Test project /builddir/build/BUILD/gromacs-2019.6/mpich_d Start 1: TestUtilsUnitTests 1/27 Test #1: TestUtilsUnitTests ............... Passed 0.05 sec Start 2: TestUtilsMpiUnitTests 2/27 Test #2: TestUtilsMpiUnitTests ............ Passed 0.04 sec Start 3: MdlibUnitTest 3/27 Test #3: MdlibUnitTest .................... Passed 0.03 sec Start 4: AppliedForcesUnitTest 4/27 Test #4: AppliedForcesUnitTest ............ Passed 0.02 sec Start 5: ListedForcesTest 5/27 Test #5: ListedForcesTest ................. Passed 0.03 sec Start 6: CommandLineUnitTests 6/27 Test #6: CommandLineUnitTests ............. Passed 0.03 sec Start 7: DomDecTests 7/27 Test #7: DomDecTests ...................... Passed 0.02 sec Start 8: EwaldUnitTests 8/27 Test #8: EwaldUnitTests ................... Passed 0.44 sec Start 9: FFTUnitTests 9/27 Test #9: FFTUnitTests ..................... Passed 0.05 sec Start 10: GpuUtilsUnitTests 10/27 Test #10: GpuUtilsUnitTests ................ Passed 0.03 sec Start 11: HardwareUnitTests 11/27 Test #11: HardwareUnitTests ................ Passed 0.05 sec Start 12: MathUnitTests 12/27 Test #12: MathUnitTests .................... Passed 0.03 sec Start 13: MdrunUtilityUnitTests 13/27 Test #13: MdrunUtilityUnitTests ............ Passed 0.03 sec Start 14: MdrunUtilityMpiUnitTests 14/27 Test #14: MdrunUtilityMpiUnitTests ......... Passed 0.05 sec Start 15: OnlineHelpUnitTests 15/27 Test #15: OnlineHelpUnitTests .............. Passed 0.02 sec Start 16: OptionsUnitTests 16/27 Test #16: OptionsUnitTests ................. Passed 0.03 sec Start 17: RandomUnitTests 17/27 Test #17: RandomUnitTests .................. Passed 0.04 sec Start 18: RestraintTests 18/27 Test #18: RestraintTests ................... Passed 0.02 sec Start 19: TableUnitTests 19/27 Test #19: TableUnitTests ................... Passed 0.53 sec Start 20: TaskAssignmentUnitTests 20/27 Test #20: TaskAssignmentUnitTests .......... Passed 0.02 sec Start 21: UtilityUnitTests 21/27 Test #21: UtilityUnitTests ................. Passed 0.05 sec Start 22: UtilityMpiUnitTests 22/27 Test #22: UtilityMpiUnitTests .............. Passed 0.05 sec Start 23: FileIOTests 23/27 Test #23: FileIOTests ...................... Passed 0.03 sec Start 24: PullTest 24/27 Test #24: PullTest ......................... Passed 0.02 sec Start 25: AwhTest 25/27 Test #25: AwhTest .......................... Passed 0.03 sec Start 26: SimdUnitTests 26/27 Test #26: SimdUnitTests .................... Passed 0.02 sec Start 27: CompatibilityHelpersTests 27/27 Test #27: CompatibilityHelpersTests ........ Passed 0.02 sec 100% tests passed, 0 tests failed out of 27 Label Time Summary: GTest = 1.79 sec*proc (27 tests) MpiTest = 0.13 sec*proc (3 tests) UnitTest = 1.79 sec*proc (27 tests) Total Test time (real) = 1.85 sec make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [100%] Built target run-ctest-nophys make -f tests/CMakeFiles/missing-tests-notice.dir/build.make tests/CMakeFiles/missing-tests-notice.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' cd /builddir/build/BUILD/gromacs-2019.6/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/tests /builddir/build/BUILD/gromacs-2019.6/mpich_d /builddir/build/BUILD/gromacs-2019.6/mpich_d/tests /builddir/build/BUILD/gromacs-2019.6/mpich_d/tests/CMakeFiles/missing-tests-notice.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/tests/CMakeFiles/missing-tests-notice.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/tests/CMakeFiles/missing-tests-notice.dir/depend.internal". 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If you want to run them from the build system, get the correct version of the regression tests package and set REGRESSIONTEST_PATH in CMake to point to it, or set REGRESSIONTEST_DOWNLOAD=ON. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [100%] Built target missing-tests-notice make -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' cd /builddir/build/BUILD/gromacs-2019.6/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/mpich_d /builddir/build/BUILD/gromacs-2019.6/mpich_d /builddir/build/BUILD/gromacs-2019.6/mpich_d/CMakeFiles/check.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/CMakeFiles/check.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/CMakeFiles/check.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/CMakeFiles/check.dir/depend.internal". Scanning dependencies of target check make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[3]: Nothing to be done for 'CMakeFiles/check.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [100%] Built target check make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019.6/mpich_d/CMakeFiles 0 make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' + test -n mpich + module unload mpi/mpich-arm ++ /usr/share/lmod/lmod/libexec/lmod sh unload mpi/mpich-arm + eval unset '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' unset 'LD_LIBRARY_PATH;' unset '__LMOD_REF_COUNT_LOADEDMODULES;' unset 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' unset 'MPI_BIN;' unset 'MPI_COMPILER;' unset 'MPI_FORTRAN_MOD_DIR;' unset 'MPI_HOME;' unset 'MPI_INCLUDE;' unset 'MPI_LIB;' unset 'MPI_MAN;' unset 'MPI_PYTHON2_SITEARCH;' unset 'MPI_PYTHON3_SITEARCH;' unset 'MPI_PYTHON_SITEARCH;' unset 'MPI_SUFFIX;' unset 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=:/usr/lib/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' unset '__LMOD_REF_COUNT__LMFILES_;' unset '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0=;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ unset __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ unset LD_LIBRARY_PATH ++ unset __LMOD_REF_COUNT_LOADEDMODULES ++ unset LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1 ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ unset MPI_BIN ++ unset MPI_COMPILER ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset MPI_INCLUDE ++ unset MPI_LIB ++ unset MPI_MAN ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_PYTHON_SITEARCH Processing files: gromacs-2019.6-1.fc31.armv7hl ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=:/usr/lib/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset __LMOD_REF_COUNT__LMFILES_ ++ unset _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0= ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + for mpi in '' mpich openmpi + test openmpi = openmpi + continue + RPM_EC=0 ++ jobs -p + exit 0 Provides: gromacs = 2019.6-1.fc31 gromacs(armv7hl-32) = 2019.6-1.fc31 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/perl ld-linux-armhf.so.3 ld-linux-armhf.so.3(GLIBC_2.4) libX11.so.6 libc.so.6 libc.so.6(GLIBC_2.4) libc.so.6(GLIBC_2.7) libgcc_s.so.1 libgcc_s.so.1(GCC_3.5) libgromacs.so.4 libgromacs_d.so.4 libm.so.6 libm.so.6(GLIBC_2.4) libstdc++.so.6 libstdc++.so.6(CXXABI_1.3) libstdc++.so.6(GLIBCXX_3.4) rtld(GNU_HASH) Obsoletes: gromacs-csh < 2016.1-2 gromacs-ngmx < 5.0.4-1 gromacs-zsh < 2016.1-2 Processing files: gromacs-common-2019.6-1.fc31.noarch Provides: gromacs-bash = 2019.6-1.fc31 gromacs-common = 2019.6-1.fc31 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Obsoletes: gromacs-bash < 5.0.4-1 Processing files: gromacs-doc-2019.6-1.fc31.noarch Provides: gromacs-doc = 2019.6-1.fc31 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Obsoletes: gromacs-common < 5.0.5-2 Processing files: gromacs-devel-2019.6-1.fc31.armv7hl Provides: cmake(gromacs) = 2019.6 cmake(gromacs_d) = 2019.6 gromacs-devel = 2019.6-1.fc31 gromacs-devel(armv7hl-32) = 2019.6-1.fc31 pkgconfig(libgromacs) = 2019.6 pkgconfig(libgromacs_d) = 2019.6 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/pkg-config cmake-filesystem libgromacs.so.4 libgromacs_d.so.4 pkgconfig(fftw3) pkgconfig(fftw3f) Obsoletes: gromacs-mpich-devel < 2016-0.1.20160318gitbec9c87 gromacs-openmpi-devel < 2016-0.1.20160318gitbec9c87 Processing files: gromacs-libs-2019.6-1.fc31.armv7hl Provides: gromacs-libs = 2019.6-1.fc31 gromacs-libs(armv7hl-32) = 2019.6-1.fc31 libgromacs.so.4 libgromacs_d.so.4 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-armhf.so.3 ld-linux-armhf.so.3(GLIBC_2.4) libc.so.6 libc.so.6(GLIBC_2.15) libc.so.6(GLIBC_2.17) libc.so.6(GLIBC_2.27) libc.so.6(GLIBC_2.28) libc.so.6(GLIBC_2.4) libc.so.6(GLIBC_2.6) libc.so.6(GLIBC_2.7) libdl.so.2 libdl.so.2(GLIBC_2.4) libfftw3.so.3 libfftw3f.so.3 libgcc_s.so.1 libgcc_s.so.1(GCC_3.5) libgomp.so.1 libgomp.so.1(GOMP_1.0) libgomp.so.1(GOMP_4.0) libgomp.so.1(GOMP_4.5) libgomp.so.1(OMP_1.0) libhwloc.so.15 libm.so.6 libm.so.6(GLIBC_2.27) libm.so.6(GLIBC_2.29) libm.so.6(GLIBC_2.4) libopenblas.so.0 libpthread.so.0 libpthread.so.0(GLIBC_2.4) libstdc++.so.6 libstdc++.so.6(CXXABI_1.3) libstdc++.so.6(CXXABI_1.3.11) libstdc++.so.6(CXXABI_1.3.3) libstdc++.so.6(CXXABI_1.3.8) libstdc++.so.6(CXXABI_ARM_1.3.3) libstdc++.so.6(GLIBCXX_3.4) libstdc++.so.6(GLIBCXX_3.4.11) libstdc++.so.6(GLIBCXX_3.4.14) libstdc++.so.6(GLIBCXX_3.4.15) libstdc++.so.6(GLIBCXX_3.4.18) libstdc++.so.6(GLIBCXX_3.4.19) libstdc++.so.6(GLIBCXX_3.4.20) libstdc++.so.6(GLIBCXX_3.4.21) libstdc++.so.6(GLIBCXX_3.4.22) libstdc++.so.6(GLIBCXX_3.4.9) libtng_io.so.1 rtld(GNU_HASH) Processing files: gromacs-openmpi-2019.6-1.fc31.armv7hl Provides: gromacs-openmpi = 2019.6-1.fc31 gromacs-openmpi(armv7hl-32) = 2019.6-1.fc31 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-armhf.so.3 ld-linux-armhf.so.3(GLIBC_2.4) libc.so.6 libc.so.6(GLIBC_2.15) libc.so.6(GLIBC_2.17) libc.so.6(GLIBC_2.28) libc.so.6(GLIBC_2.4) libc.so.6(GLIBC_2.6) libc.so.6(GLIBC_2.7) libfftw3.so.3 libfftw3f.so.3 libgcc_s.so.1 libgcc_s.so.1(GCC_3.5) libgomp.so.1 libgomp.so.1(GOMP_1.0) libgomp.so.1(GOMP_4.0) libgomp.so.1(OMP_1.0) libhwloc.so.15 libm.so.6 libm.so.6(GLIBC_2.27) libm.so.6(GLIBC_2.29) libm.so.6(GLIBC_2.4) libmpi.so.40(openmpi-arm) libpthread.so.0 libpthread.so.0(GLIBC_2.4) libstdc++.so.6 libstdc++.so.6(CXXABI_1.3) libstdc++.so.6(CXXABI_1.3.3) libstdc++.so.6(CXXABI_1.3.8) libstdc++.so.6(CXXABI_ARM_1.3.3) libstdc++.so.6(GLIBCXX_3.4) libstdc++.so.6(GLIBCXX_3.4.11) libstdc++.so.6(GLIBCXX_3.4.14) libstdc++.so.6(GLIBCXX_3.4.15) libstdc++.so.6(GLIBCXX_3.4.18) libstdc++.so.6(GLIBCXX_3.4.19) libstdc++.so.6(GLIBCXX_3.4.20) libstdc++.so.6(GLIBCXX_3.4.21) libstdc++.so.6(GLIBCXX_3.4.22) libtng_io.so.1 rtld(GNU_HASH) Obsoletes: gromacs-openmpi-libs < 2016-0.1.20160318gitbec9c87 Processing files: gromacs-mpich-2019.6-1.fc31.armv7hl Provides: gromacs-mpich = 2019.6-1.fc31 gromacs-mpich(armv7hl-32) = 2019.6-1.fc31 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-armhf.so.3 ld-linux-armhf.so.3(GLIBC_2.4) libc.so.6 libc.so.6(GLIBC_2.15) libc.so.6(GLIBC_2.17) libc.so.6(GLIBC_2.28) libc.so.6(GLIBC_2.4) libc.so.6(GLIBC_2.6) libc.so.6(GLIBC_2.7) libfftw3.so.3 libfftw3f.so.3 libgcc_s.so.1 libgcc_s.so.1(GCC_3.5) libgomp.so.1 libgomp.so.1(GOMP_1.0) libgomp.so.1(GOMP_4.0) libgomp.so.1(OMP_1.0) libhwloc.so.15 libm.so.6 libm.so.6(GLIBC_2.27) libm.so.6(GLIBC_2.29) libm.so.6(GLIBC_2.4) libmpi.so.12(mpich-arm) libpthread.so.0 libpthread.so.0(GLIBC_2.4) libstdc++.so.6 libstdc++.so.6(CXXABI_1.3) libstdc++.so.6(CXXABI_1.3.3) libstdc++.so.6(CXXABI_1.3.8) libstdc++.so.6(CXXABI_ARM_1.3.3) libstdc++.so.6(GLIBCXX_3.4) libstdc++.so.6(GLIBCXX_3.4.11) libstdc++.so.6(GLIBCXX_3.4.14) libstdc++.so.6(GLIBCXX_3.4.15) libstdc++.so.6(GLIBCXX_3.4.18) libstdc++.so.6(GLIBCXX_3.4.19) libstdc++.so.6(GLIBCXX_3.4.20) libstdc++.so.6(GLIBCXX_3.4.21) libstdc++.so.6(GLIBCXX_3.4.22) libtng_io.so.1 rtld(GNU_HASH) Obsoletes: gromacs-mpich-libs < 2016-0.1.20160318gitbec9c87 Processing files: gromacs-debugsource-2019.6-1.fc31.armv7hl Provides: gromacs-debugsource = 2019.6-1.fc31 gromacs-debugsource(armv7hl-32) = 2019.6-1.fc31 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: gromacs-debuginfo-2019.6-1.fc31.armv7hl Provides: debuginfo(build-id) = d33c48f3b6b3fb43697128097c79c5a31241b51f debuginfo(build-id) = ee38c12798baa4885af9ac4b9aecc17258360e3a gromacs-debuginfo = 2019.6-1.fc31 gromacs-debuginfo(armv7hl-32) = 2019.6-1.fc31 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: gromacs-debugsource(armv7hl-32) = 2019.6-1.fc31 Processing files: gromacs-libs-debuginfo-2019.6-1.fc31.armv7hl Provides: debuginfo(build-id) = 83cf352ba80db47ebf2960e5b10539f7c775eef7 debuginfo(build-id) = 9ff707677711bb51fbbd1e339a07a2098dbe605e gromacs-libs-debuginfo = 2019.6-1.fc31 gromacs-libs-debuginfo(armv7hl-32) = 2019.6-1.fc31 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: gromacs-debugsource(armv7hl-32) = 2019.6-1.fc31 Processing files: gromacs-openmpi-debuginfo-2019.6-1.fc31.armv7hl Provides: debuginfo(build-id) = 4dc4ca56b448b5bf744cdc9fb6df48675afa66c9 debuginfo(build-id) = c72aa2b8865f2a05d41fccf57f95d09d97dd12bb gromacs-openmpi-debuginfo = 2019.6-1.fc31 gromacs-openmpi-debuginfo(armv7hl-32) = 2019.6-1.fc31 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: gromacs-debugsource(armv7hl-32) = 2019.6-1.fc31 Processing files: gromacs-mpich-debuginfo-2019.6-1.fc31.armv7hl Provides: debuginfo(build-id) = 759b72c33578cba7cb40b28568b115c240cdbfde debuginfo(build-id) = a6c1e2463759ba1a16935618d9f26a40cbedc993 gromacs-mpich-debuginfo = 2019.6-1.fc31 gromacs-mpich-debuginfo(armv7hl-32) = 2019.6-1.fc31 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: gromacs-debugsource(armv7hl-32) = 2019.6-1.fc31 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm Wrote: /builddir/build/RPMS/gromacs-2019.6-1.fc31.armv7hl.rpm Wrote: /builddir/build/RPMS/gromacs-devel-2019.6-1.fc31.armv7hl.rpm Wrote: /builddir/build/RPMS/gromacs-common-2019.6-1.fc31.noarch.rpm Wrote: /builddir/build/RPMS/gromacs-doc-2019.6-1.fc31.noarch.rpm Wrote: /builddir/build/RPMS/gromacs-openmpi-2019.6-1.fc31.armv7hl.rpm Wrote: /builddir/build/RPMS/gromacs-mpich-2019.6-1.fc31.armv7hl.rpm Wrote: /builddir/build/RPMS/gromacs-libs-2019.6-1.fc31.armv7hl.rpm Wrote: /builddir/build/RPMS/gromacs-debugsource-2019.6-1.fc31.armv7hl.rpm Wrote: /builddir/build/RPMS/gromacs-debuginfo-2019.6-1.fc31.armv7hl.rpm Wrote: /builddir/build/RPMS/gromacs-openmpi-debuginfo-2019.6-1.fc31.armv7hl.rpm Wrote: /builddir/build/RPMS/gromacs-mpich-debuginfo-2019.6-1.fc31.armv7hl.rpm Wrote: /builddir/build/RPMS/gromacs-libs-debuginfo-2019.6-1.fc31.armv7hl.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.UzEfOq + umask 022 + cd /builddir/build/BUILD + cd gromacs-2019.6 + /usr/bin/rm -rf /builddir/build/BUILDROOT/gromacs-2019.6-1.fc31.arm + RPM_EC=0 ++ jobs -p + exit 0 Child return code was: 0