Mock Version: 1.4.19 Mock Version: 1.4.19 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target ppc64le --nodeps /builddir/build/SPECS/R-rgeos.spec'], chrootPath='/var/lib/mock/f31-build-17673106-1276174/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=201600uid=1000gid=425user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target ppc64le --nodeps /builddir/build/SPECS/R-rgeos.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False Building target platforms: ppc64le Building for target ppc64le setting SOURCE_DATE_EPOCH=1570060800 Wrote: /builddir/build/SRPMS/R-rgeos-0.5.2-1.fc31.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target ppc64le --nodeps /builddir/build/SPECS/R-rgeos.spec'], chrootPath='/var/lib/mock/f31-build-17673106-1276174/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=201600uid=1000gid=425user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target ppc64le --nodeps /builddir/build/SPECS/R-rgeos.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False Building target platforms: ppc64le Building for target ppc64le setting SOURCE_DATE_EPOCH=1570060800 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.V2oOfG + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf rgeos + /usr/bin/mkdir -p rgeos + cd rgeos + /usr/bin/gzip -dc /builddir/build/SOURCES/rgeos_0.5-2.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + pushd rgeos ~/build/BUILD/rgeos/rgeos ~/build/BUILD/rgeos + echo 'Patch #1 (rgeos-Be-explicit-about-sp.patch):' Patch #1 (rgeos-Be-explicit-about-sp.patch): + /usr/bin/patch --no-backup-if-mismatch -p1 --fuzz=0 patching file man/topo-bin-gUnion.Rd + popd ~/build/BUILD/rgeos + rm rgeos/inst/SVN_VERSION + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.dv2RBJ + umask 022 + cd /builddir/build/BUILD + cd rgeos + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.iAlPTI + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/R-rgeos-0.5.2-1.fc31.ppc64le '!=' / ']' + rm -rf /builddir/build/BUILDROOT/R-rgeos-0.5.2-1.fc31.ppc64le ++ dirname /builddir/build/BUILDROOT/R-rgeos-0.5.2-1.fc31.ppc64le + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/R-rgeos-0.5.2-1.fc31.ppc64le + cd rgeos + mkdir -p /builddir/build/BUILDROOT/R-rgeos-0.5.2-1.fc31.ppc64le/usr/lib64/R/library + /usr/bin/R CMD INSTALL -l /builddir/build/BUILDROOT/R-rgeos-0.5.2-1.fc31.ppc64le/usr/lib64/R/library rgeos * installing *source* package 'rgeos' ... file 'inst/SVN_VERSION' is missing file 'man/topo-bin-gUnion.Rd' has the wrong MD5 checksum ** using staged installation configure: CC: gcc -m64 configure: CXX: g++ -m64 -std=gnu++11 configure: rgeos: 0.5-2 checking for /usr/bin/svnversion... no cat: inst/SVN_VERSION: No such file or directory configure: svn revision: checking for geos-config... /usr/bin/geos-config checking geos-config usability... yes configure: GEOS version: 3.7.1 checking geos version at least 3.2.0... yes checking geos-config clibs... yes checking geos_c.h presence and usability... yes checking geos: linking with libgeos_c... yes configure: PKG_CPPFLAGS: -I/usr/include configure: PKG_LIBS: -L/usr/lib64 -lgeos_c configure: creating ./config.status config.status: creating src/Makevars ** libs g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I/usr/include -I"/usr/lib64/R/library/sp/include" -I/usr/local/include -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c dummy.cc -o dummy.o gcc -m64 -I"/usr/include/R" -DNDEBUG -I/usr/include -I"/usr/lib64/R/library/sp/include" -I/usr/local/include -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c init.c -o init.o gcc -m64 -I"/usr/include/R" -DNDEBUG -I/usr/include -I"/usr/lib64/R/library/sp/include" -I/usr/local/include -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c local_stubs.c -o local_stubs.o gcc -m64 -I"/usr/include/R" -DNDEBUG -I/usr/include -I"/usr/lib64/R/library/sp/include" -I/usr/local/include -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c rgeos.c -o rgeos.o gcc -m64 -I"/usr/include/R" -DNDEBUG -I/usr/include -I"/usr/lib64/R/library/sp/include" -I/usr/local/include -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c rgeos_R2geos.c -o rgeos_R2geos.o gcc -m64 -I"/usr/include/R" -DNDEBUG -I/usr/include -I"/usr/lib64/R/library/sp/include" -I/usr/local/include -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c rgeos_R2geosMP.c -o rgeos_R2geosMP.o gcc -m64 -I"/usr/include/R" -DNDEBUG -I/usr/include -I"/usr/lib64/R/library/sp/include" -I/usr/local/include -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c rgeos_bbox.c -o rgeos_bbox.o gcc -m64 -I"/usr/include/R" -DNDEBUG -I/usr/include -I"/usr/lib64/R/library/sp/include" -I/usr/local/include -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c rgeos_buffer.c -o rgeos_buffer.o gcc -m64 -I"/usr/include/R" -DNDEBUG -I/usr/include -I"/usr/lib64/R/library/sp/include" -I/usr/local/include -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c rgeos_coord.c -o rgeos_coord.o gcc -m64 -I"/usr/include/R" -DNDEBUG -I/usr/include -I"/usr/lib64/R/library/sp/include" -I/usr/local/include -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c rgeos_geos2R.c -o rgeos_geos2R.o gcc -m64 -I"/usr/include/R" -DNDEBUG -I/usr/include -I"/usr/lib64/R/library/sp/include" -I/usr/local/include -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c rgeos_linearref.c -o rgeos_linearref.o gcc -m64 -I"/usr/include/R" -DNDEBUG -I/usr/include -I"/usr/lib64/R/library/sp/include" -I/usr/local/include -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c rgeos_misc.c -o rgeos_misc.o gcc -m64 -I"/usr/include/R" -DNDEBUG -I/usr/include -I"/usr/lib64/R/library/sp/include" -I/usr/local/include -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c rgeos_poly2nb.c -o rgeos_poly2nb.o gcc -m64 -I"/usr/include/R" -DNDEBUG -I/usr/include -I"/usr/lib64/R/library/sp/include" -I/usr/local/include -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c rgeos_predicate_binary.c -o rgeos_predicate_binary.o gcc -m64 -I"/usr/include/R" -DNDEBUG -I/usr/include -I"/usr/lib64/R/library/sp/include" -I/usr/local/include -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c rgeos_predicate_unary.c -o rgeos_predicate_unary.o gcc -m64 -I"/usr/include/R" -DNDEBUG -I/usr/include -I"/usr/lib64/R/library/sp/include" -I/usr/local/include -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c rgeos_topology.c -o rgeos_topology.o gcc -m64 -I"/usr/include/R" -DNDEBUG -I/usr/include -I"/usr/lib64/R/library/sp/include" -I/usr/local/include -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c rgeos_topology_binary.c -o rgeos_topology_binary.o gcc -m64 -I"/usr/include/R" -DNDEBUG -I/usr/include -I"/usr/lib64/R/library/sp/include" -I/usr/local/include -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c rgeos_validate.c -o rgeos_validate.o gcc -m64 -I"/usr/include/R" -DNDEBUG -I/usr/include -I"/usr/lib64/R/library/sp/include" -I/usr/local/include -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c rgeos_wkt.c -o rgeos_wkt.o g++ -m64 -std=gnu++11 -shared -L/usr/lib64/R/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o rgeos.so dummy.o init.o local_stubs.o rgeos.o rgeos_R2geos.o rgeos_R2geosMP.o rgeos_bbox.o rgeos_buffer.o rgeos_coord.o rgeos_geos2R.o rgeos_linearref.o rgeos_misc.o rgeos_poly2nb.o rgeos_predicate_binary.o rgeos_predicate_unary.o rgeos_topology.o rgeos_topology_binary.o rgeos_validate.o rgeos_wkt.o -L/usr/lib64 -lgeos_c -L/usr/lib64/R/lib -lR installing to /builddir/build/BUILDROOT/R-rgeos-0.5.2-1.fc31.ppc64le/usr/lib64/R/library/00LOCK-rgeos/00new/rgeos/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'rgeos' finding HTML links ... done bbox2SP html Rd warning: /builddir/build/BUILD/rgeos/rgeos/man/bbox2SP.Rd:14: file link 'CRS' in package 'sp' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/rgeos/rgeos/man/bbox2SP.Rd:19: file link 'gIntersection' in package 'rgeos' does not exist and so has been treated as a topic class-Ring html class-SpatialCollections html finding level-2 HTML links ... done class-SpatialRings html class-SpatialRingsDataFrame html class-gpc.poly html class-gpc.poly.nohole html comment-functions html constructor-SpatialCollections html constructor-SpatialRings html experimental-functions html gpc-new-generics html gpc-polyfile html labelpt html linref-gInterpolate html linref-gProject html misc-gArea html misc-gBuffer html misc-gDistance html misc-gLength html misc-gNearestPoints html misc-over html pred-binary-gContains html pred-binary-gCrosses html pred-binary-gEquals html pred-binary-gIntersects html pred-binary-gRelate html pred-binary-gTouches html pred-unary-gIsEmpty html pred-unary-gIsRing html pred-unary-gIsSimple html pred-unary-gIsValid html topo-bin-gDifference html topo-bin-gIntersection html topo-bin-gSymdifference html topo-bin-gUnion html topo-unary-gBoundary html topo-unary-gCentroid html topo-unary-gConvexHull html topo-unary-gDelaunayTriangulation html topo-unary-gEnvelope html topo-unary-gNode html topo-unary-gPointOnSurface html topo-unary-gPolygonize html topo-unary-gSimplify html utility-functions html wkt-functions html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rgeos) + test -d rgeos/src + cd rgeos/src + rm -f dummy.o init.o local_stubs.o rgeos.o rgeos_R2geos.o rgeos_R2geosMP.o rgeos_bbox.o rgeos_buffer.o rgeos_coord.o rgeos_geos2R.o rgeos_linearref.o rgeos_misc.o rgeos_poly2nb.o rgeos_predicate_binary.o rgeos_predicate_unary.o rgeos_topology.o rgeos_topology_binary.o rgeos_validate.o rgeos_wkt.o rgeos.so + rm -f /builddir/build/BUILDROOT/R-rgeos-0.5.2-1.fc31.ppc64le/usr/lib64/R/library/R.css + /usr/lib/rpm/find-debuginfo.sh -j12 --strict-build-id -m -i --build-id-seed 0.5.2-1.fc31 --unique-debug-suffix -0.5.2-1.fc31.ppc64le --unique-debug-src-base R-rgeos-0.5.2-1.fc31.ppc64le --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/rgeos explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/R-rgeos-0.5.2-1.fc31.ppc64le/usr/lib64/R/library/rgeos/libs/rgeos.so extracting debug info from /builddir/build/BUILDROOT/R-rgeos-0.5.2-1.fc31.ppc64le/usr/lib64/R/library/rgeos/libs/rgeos.so original debug info size: 444kB, size after compression: 404kB /usr/lib/rpm/sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. 283 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/redhat/brp-python-bytecompile /usr/bin/python 1 0 + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-mangle-shebangs Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.r05E8G + umask 022 + cd /builddir/build/BUILD + cd rgeos + _R_CHECK_FORCE_SUGGESTS_=0 + /usr/bin/R CMD check rgeos * using log directory '/builddir/build/BUILD/rgeos/rgeos.Rcheck' * using R version 3.6.1 (2019-07-05) * using platform: powerpc64le-redhat-linux-gnu (64-bit) * using session charset: ASCII * checking for file 'rgeos/DESCRIPTION' ... OK * this is package 'rgeos' version '0.5-2' * checking package namespace information ... OK * checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib: cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES' Warning: unable to access index for repository https://bioconductor.org/packages/3.9/bioc/src/contrib: cannot open URL 'https://bioconductor.org/packages/3.9/bioc/src/contrib/PACKAGES' Warning: unable to access index for repository https://bioconductor.org/packages/3.9/data/annotation/src/contrib: cannot open URL 'https://bioconductor.org/packages/3.9/data/annotation/src/contrib/PACKAGES' Warning: unable to access index for repository https://bioconductor.org/packages/3.9/data/experiment/src/contrib: cannot open URL 'https://bioconductor.org/packages/3.9/data/experiment/src/contrib/PACKAGES' NOTE Packages suggested but not available for checking: 'maptools', 'maps' * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package 'rgeos' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... WARNING Unknown package 'maptools' in Rd xrefs * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in shell scripts ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... NOTE Package has both 'src/Makevars.in' and 'src/Makevars'. Installation with --no-configure' is unlikely to work. If you intended 'src/Makevars' to be used on Windows, rename it to 'src/Makevars.win' otherwise remove it. If 'configure' created 'src/Makevars', you need a 'cleanup' script. * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking compiled code ... OK * checking examples ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... Running 'leak_by_exception.R' Comparing 'leak_by_exception.Rout' to 'leak_by_exception.Rout.save' ...9a10 > g1 is invalid 11a13,17 > In addition: Warning messages: > 1: In RGEOSUnaryPredFunc(spgeom, byid, "rgeos_isvalid") : > Self-intersection at or near point 5 5 > 2: In gUnion(g1, g2) : > Invalid objects found; consider using set_RGEOS_CheckValidity(2L) 12a19 > g1 is invalid 14a22,26 > In addition: Warning messages: > 1: In RGEOSUnaryPredFunc(spgeom, byid, "rgeos_isvalid") : > Self-intersection at or near point 5 5 > 2: In gDifference(g1, g2) : > Invalid objects found; consider using set_RGEOS_CheckValidity(2L) 15a28 > g1 is invalid 17a31,35 > In addition: Warning messages: > 1: In RGEOSUnaryPredFunc(spgeom, byid, "rgeos_isvalid") : > Self-intersection at or near point 5 5 > 2: In gIntersection(g1, g2) : > Invalid objects found; consider using set_RGEOS_CheckValidity(2L) 18a37 > g1 is invalid 20a40,44 > In addition: Warning messages: > 1: In RGEOSUnaryPredFunc(spgeom, byid, "rgeos_isvalid") : > Self-intersection at or near point 5 5 > 2: In gSymdifference(g1, g2) : > Invalid objects found; consider using set_RGEOS_CheckValidity(2L) Running 'test-all.R' OK * checking PDF version of manual ... OK * DONE Status: 1 WARNING, 2 NOTEs See '/builddir/build/BUILD/rgeos/rgeos.Rcheck/00check.log' for details. + RPM_EC=0 ++ jobs -p + exit 0 Processing files: R-rgeos-0.5.2-1.fc31.ppc64le Provides: R(rgeos) = 0.5-2 R-rgeos = 0.5.2-1.fc31 R-rgeos(ppc-64) = 0.5.2-1.fc31 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: R(graphics) R(methods) R(sp) >= 1.1-0 R(stats) R(utils) R-core >= 3.3.0 libR.so()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libgeos_c.so.1()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) rtld(GNU_HASH) Suggests: R(XML) R(maps) R(rgdal) R(testthat) Processing files: R-rgeos-debugsource-0.5.2-1.fc31.ppc64le Provides: R-rgeos-debugsource = 0.5.2-1.fc31 R-rgeos-debugsource(ppc-64) = 0.5.2-1.fc31 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-rgeos-debuginfo-0.5.2-1.fc31.ppc64le Provides: R-rgeos-debuginfo = 0.5.2-1.fc31 R-rgeos-debuginfo(ppc-64) = 0.5.2-1.fc31 debuginfo(build-id) = 231598be694fb875e6623ec08513927a5ddd8d93 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: R-rgeos-debugsource(ppc-64) = 0.5.2-1.fc31 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-rgeos-0.5.2-1.fc31.ppc64le Wrote: /builddir/build/RPMS/R-rgeos-debugsource-0.5.2-1.fc31.ppc64le.rpm Wrote: /builddir/build/RPMS/R-rgeos-debuginfo-0.5.2-1.fc31.ppc64le.rpm Wrote: /builddir/build/RPMS/R-rgeos-0.5.2-1.fc31.ppc64le.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.IeL0YF + umask 022 + cd /builddir/build/BUILD + cd rgeos + /usr/bin/rm -rf /builddir/build/BUILDROOT/R-rgeos-0.5.2-1.fc31.ppc64le + RPM_EC=0 ++ jobs -p + exit 0 Child return code was: 0