Mock Version: 1.3.4 Mock Version: 1.3.4 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/R-ps.spec'], chrootPath='/var/lib/mock/f29-build-13635833-988387/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=172800uid=1000gid=425user='mockbuild'nspawn_args=[]printOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/R-ps.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/R-ps-1.1.0-3.fc29.src.rpm Child return code was: 0 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/R-ps.spec'], chrootPath='/var/lib/mock/f29-build-13635833-988387/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=172800uid=1000gid=425user='mockbuild'nspawn_args=[]printOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/R-ps.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False Building target platforms: x86_64 Building for target x86_64 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.JO3BVJ + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf ps + /usr/bin/mkdir -p ps + cd ps + /usr/bin/gzip -dc /builddir/build/SOURCES/ps_1.1.0.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . ~/build/BUILD/ps/ps ~/build/BUILD/ps Patch #1 (0001-Handle-failure-from-sysconf.patch): + pushd ps + echo 'Patch #1 (0001-Handle-failure-from-sysconf.patch):' + /usr/bin/patch --no-backup-if-mismatch -p1 --fuzz=0 patching file src/api-linux.c Patch #2 (0002-Invert-the-sense-of-psll_linux_clock_ticks.patch): + echo 'Patch #2 (0002-Invert-the-sense-of-psll_linux_clock_ticks.patch):' + /usr/bin/patch --no-backup-if-mismatch -p1 --fuzz=0 patching file src/api-linux.c Patch #3 (0003-Use-safer-comparison-for-process-start-time.patch): + echo 'Patch #3 (0003-Use-safer-comparison-for-process-start-time.patch):' + /usr/bin/patch --no-backup-if-mismatch -p1 --fuzz=0 patching file src/api-linux.c ~/build/BUILD/ps + popd + sed -i 's/covr, //g' ps/DESCRIPTION + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.lyaJAq + umask 022 + cd /builddir/build/BUILD + cd ps + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.uoehg7 + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/R-ps-1.1.0-3.fc29.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/R-ps-1.1.0-3.fc29.x86_64 ++ dirname /builddir/build/BUILDROOT/R-ps-1.1.0-3.fc29.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/R-ps-1.1.0-3.fc29.x86_64 + cd ps + mkdir -p /builddir/build/BUILDROOT/R-ps-1.1.0-3.fc29.x86_64/usr/lib64/R/library + /usr/bin/R CMD INSTALL -l /builddir/build/BUILDROOT/R-ps-1.1.0-3.fc29.x86_64/usr/lib64/R/library ps * installing *source* package 'ps' ... files 'DESCRIPTION', 'src/api-linux.c' have the wrong MD5 checksums ** libs gcc -m64 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall px.c -o px gcc -m64 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c init.c -o init.o gcc -m64 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c api-common.c -o api-common.o gcc -m64 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c common.c -o common.o gcc -m64 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c extra.c -o extra.o gcc -m64 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dummy.c -o dummy.o gcc -m64 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c posix.c -o posix.o gcc -m64 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c api-posix.c -o api-posix.o gcc -m64 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c linux.c -o linux.o gcc -m64 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c api-linux.c -o api-linux.o api-linux.c: In function 'ps__find_if_env': api-linux.c:861:9: warning: unused variable 'pid' [-Wunused-variable] pid_t pid = INTEGER(r_pid)[0]; ^~~ gcc -m64 -shared -L/usr/lib64/R/lib -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o ps.so init.o api-common.o common.o extra.o dummy.o posix.o api-posix.o linux.o api-linux.o -L/usr/lib64/R/lib -lR installing via 'install.libs.R' to /builddir/build/BUILDROOT/R-ps-1.1.0-3.fc29.x86_64/usr/lib64/R/library/ps ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'ps' finding HTML links ... done CleanupReporter html ps html ps_boot_time html ps_children html ps_cmdline html ps_cpu_times html ps_create_time html ps_cwd html ps_environ html ps_exe html ps_handle html ps_interrupt html ps_is_running html ps_kill html ps_kill_tree html ps_memory_info html ps_name html ps_num_fds html ps_num_threads html ps_open_files html ps_os_type html ps_pid html ps_pids html ps_ppid html ps_resume html ps_send_signal html ps_status html ps_suspend html ps_terminal html ps_terminate html ps_uids html ps_username html ps_users html signals html ** building package indices ** testing if installed package can be loaded * DONE (ps) + test -d ps/src + cd ps/src + rm -f api-common.o api-linux.o api-posix.o common.o dummy.o extra.o init.o linux.o posix.o ps.so + rm -f /builddir/build/BUILDROOT/R-ps-1.1.0-3.fc29.x86_64/usr/lib64/R/library/R.css + /usr/lib/rpm/find-debuginfo.sh -j6 --strict-build-id -m -i --build-id-seed 1.1.0-3.fc29 --unique-debug-suffix -1.1.0-3.fc29.x86_64 --unique-debug-src-base R-ps-1.1.0-3.fc29.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/ps explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/R-ps-1.1.0-3.fc29.x86_64/usr/lib64/R/library/ps/libs/ps.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/R-ps-1.1.0-3.fc29.x86_64/usr/lib64/R/library/ps/bin/px extracting debug info from /builddir/build/BUILDROOT/R-ps-1.1.0-3.fc29.x86_64/usr/lib64/R/library/ps/bin/px extracting debug info from /builddir/build/BUILDROOT/R-ps-1.1.0-3.fc29.x86_64/usr/lib64/R/library/ps/libs/ps.so /usr/lib/rpm/sepdebugcrcfix: Updated 2 CRC32s, 0 CRC32s did match. 148 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig /sbin/ldconfig: Warning: ignoring configuration file that cannot be opened: /etc/ld.so.conf: No such file or directory + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 1 + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-mangle-shebangs Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.gkoh2X + umask 022 + cd /builddir/build/BUILD + cd ps + /usr/bin/R CMD check ps * using log directory '/builddir/build/BUILD/ps/ps.Rcheck' * using R version 3.5.0 (2018-04-23) * using platform: x86_64-redhat-linux-gnu (64-bit) * using session charset: ASCII * checking for file 'ps/DESCRIPTION' ... OK * this is package 'ps' version '1.1.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib: cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES' Warning: unable to access index for repository https://bioconductor.org/packages/3.7/bioc/src/contrib: cannot open URL 'https://bioconductor.org/packages/3.7/bioc/src/contrib/PACKAGES' Warning: unable to access index for repository https://bioconductor.org/packages/3.7/data/annotation/src/contrib: cannot open URL 'https://bioconductor.org/packages/3.7/data/annotation/src/contrib/PACKAGES' Warning: unable to access index for repository https://bioconductor.org/packages/3.7/data/experiment/src/contrib: cannot open URL 'https://bioconductor.org/packages/3.7/data/experiment/src/contrib/PACKAGES' OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... WARNING Found the following executable file: src/px Source packages should not contain undeclared executable files. See section 'Package structure' in the 'Writing R Extensions' manual. * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package 'ps' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in shell scripts ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... NOTE Package has both 'src/Makevars.in' and 'src/Makevars'. Installation with --no-configure' is unlikely to work. If you intended 'src/Makevars' to be used on Windows, rename it to 'src/Makevars.win' otherwise remove it. If 'configure' created 'src/Makevars', you need a 'cleanup' script. * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking compiled code ... OK * checking examples ... WARNING checking a package with encoding 'UTF-8' in an ASCII locale * checking for unstated dependencies in 'tests' ... OK * checking tests ... Running 'testthat.R' OK * checking PDF version of manual ... OK * DONE Status: 2 WARNINGs, 1 NOTE See '/builddir/build/BUILD/ps/ps.Rcheck/00check.log' for details. + exit 0 Processing files: R-ps-1.1.0-3.fc29.x86_64 Provides: R-ps = 1.1.0-3.fc29 R-ps(x86-64) = 1.1.0-3.fc29 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libR.so()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) rtld(GNU_HASH) Suggests: R-tibble Processing files: R-ps-debugsource-1.1.0-3.fc29.x86_64 Provides: R-ps-debugsource = 1.1.0-3.fc29 R-ps-debugsource(x86-64) = 1.1.0-3.fc29 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-ps-debuginfo-1.1.0-3.fc29.x86_64 Provides: R-ps-debuginfo = 1.1.0-3.fc29 R-ps-debuginfo(x86-64) = 1.1.0-3.fc29 debuginfo(build-id) = 57eb1c7f68cfdf3bbbf056ba16d5f6df0f387e83 debuginfo(build-id) = a9e9960a70716e7ad4f7a4c1aad43584a020f18b Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: R-ps-debugsource(x86-64) = 1.1.0-3.fc29 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-ps-1.1.0-3.fc29.x86_64 Wrote: /builddir/build/RPMS/R-ps-1.1.0-3.fc29.x86_64.rpm Wrote: /builddir/build/RPMS/R-ps-debugsource-1.1.0-3.fc29.x86_64.rpm Wrote: /builddir/build/RPMS/R-ps-debuginfo-1.1.0-3.fc29.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.sPc5eL + umask 022 + cd /builddir/build/BUILD + cd ps + /usr/bin/rm -rf /builddir/build/BUILDROOT/R-ps-1.1.0-3.fc29.x86_64 + exit 0 Child return code was: 0