Mock Version: 1.4.19
Mock Version: 1.4.19
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target armv7hl --nodeps /builddir/build/SPECS/R-ncdf4.spec'], chrootPath='/var/lib/mock/f29-build-17932210-1286447/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0xb4fa0990>timeout=201600uid=1000gid=425user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target armv7hl --nodeps /builddir/build/SPECS/R-ncdf4.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False
Building target platforms: armv7hl
Building for target armv7hl
Wrote: /builddir/build/SRPMS/R-ncdf4-1.17-1.fc29.src.rpm
Child return code was: 0
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target armv7hl --nodeps /builddir/build/SPECS/R-ncdf4.spec'], chrootPath='/var/lib/mock/f29-build-17932210-1286447/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0xb4fa0990>timeout=201600uid=1000gid=425user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target armv7hl --nodeps /builddir/build/SPECS/R-ncdf4.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False
Building target platforms: armv7hl
Building for target armv7hl
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.Ffontz
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf ncdf4
+ /usr/bin/mkdir -p ncdf4
+ cd ncdf4
+ /usr/bin/gzip -dc /builddir/build/SOURCES/ncdf4_1.17.tar.gz
+ /usr/bin/tar -xof -
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ rm ncdf4/inst/HDF5_COPYING
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.SRnQn3
+ umask 022
+ cd /builddir/build/BUILD
+ cd ncdf4
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.VOM5xw
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/R-ncdf4-1.17-1.fc29.arm '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/R-ncdf4-1.17-1.fc29.arm
++ dirname /builddir/build/BUILDROOT/R-ncdf4-1.17-1.fc29.arm
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/R-ncdf4-1.17-1.fc29.arm
+ cd ncdf4
+ mkdir -p /builddir/build/BUILDROOT/R-ncdf4-1.17-1.fc29.arm/usr/lib/R/library
+ /usr/bin/R CMD INSTALL -l /builddir/build/BUILDROOT/R-ncdf4-1.17-1.fc29.arm/usr/lib/R/library ncdf4
* installing *source* package 'ncdf4' ...
file 'inst/HDF5_COPYING' is missing
** using staged installation
configure.ac: starting
checking for nc-config... yes
Using nc-config: nc-config
Output of nc-config --all:
This netCDF 4.4.1.1 has been built with the following features: 
  --cc        -> gcc
  --cflags    -> -I/usr/include -I/usr/include/hdf
  --libs      -> -L/usr/lib -lnetcdf
  --has-c++   -> no
  --cxx       -> 
  --has-c++4  -> no
  --cxx4      -> 
  --has-fortran-> no
  --has-dap   -> yes
  --has-nc2   -> yes
  --has-nc4   -> yes
  --has-hdf5  -> yes
  --has-hdf4  -> yes
  --has-logging-> no
  --has-pnetcdf-> no
  --has-szlib -> 
  --prefix    -> /usr
  --includedir-> /usr/include
  --libdir    -> /usr/lib
  --version   -> netCDF 4.4.1.1
---
netcdf.m4: about to set rpath, here is source string: >-L/usr/lib -lnetcdf<
netcdf.m4: final rpath:   -Wl,-rpath,/usr/lib
Netcdf library version: netCDF 4.4.1.1
Netcdf library has version 4 interface present: yes
Netcdf library was compiled with C compiler: gcc
configure: creating ./config.status
config.status: creating src/Makevars
 
**********************  Results of ncdf4 package configure *******************
 
netCDF v4 CPP flags      = -I/usr/include -I/usr/include/hdf
netCDF v4 LD flags       =   -Wl,-rpath,/usr/lib -L/usr/lib -lnetcdf 
netCDF v4 runtime path   =   -Wl,-rpath,/usr/lib
 
netCDF C compiler used   = gcc
R      C compiler used   = gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard
 
******************************************************************************
 
** libs
gcc -I"/usr/include/R" -DNDEBUG -I/usr/include -I/usr/include/hdf  -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard  -c ncdf.c -o ncdf.o
ncdf.c:113:27: warning: missing braces around initializer [-Wmissing-braces]
 R_CMethodDef cMethods[] = {
                           ^
ncdf.c:186:33: warning: missing braces around initializer [-Wmissing-braces]
 R_CallMethodDef callMethods[] = {
                                 ^
gcc -shared -L/usr/lib/R/lib -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o ncdf4.so ncdf.o -Wl,-rpath,/usr/lib -L/usr/lib -lnetcdf -L/usr/lib/R/lib -lR
installing to /builddir/build/BUILDROOT/R-ncdf4-1.17-1.fc29.arm/usr/lib/R/library/00LOCK-ncdf4/00new/ncdf4/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'ncdf4'
    finding HTML links ... done
    ancvar_put                              html  
    nc_close                                html  
    nc_create                               html  
    nc_enddef                               html  
    nc_open                                 html  
    nc_redef                                html  
    nc_sync                                 html  
    nc_version                              html  
    ncatt_get                               html  
    ncatt_put                               html  
    ncdf4-internal                          html  
    ncdf4-package                           html  
Rd warning: /builddir/build/BUILD/ncdf4/ncdf4/man/ncdf4-package.Rd:57: file link 'ncvar_put' in package 'ncdf4' does not exist and so has been treated as a topic
Rd warning: /builddir/build/BUILD/ncdf4/ncdf4/man/ncdf4-package.Rd:74: file link 'ncvar_put' in package 'ncdf4' does not exist and so has been treated as a topic
    ncdim_def                               html  
    ncvar_add                               html  
    ncvar_change_missval                    html  
    ncvar_def                               html  
Rd warning: /builddir/build/BUILD/ncdf4/ncdf4/man/ncvar_def.Rd:67: file link 'ncvar_put' in package 'ncdf4' does not exist and so has been treated as a topic
Rd warning: /builddir/build/BUILD/ncdf4/ncdf4/man/ncvar_def.Rd:108: file link 'ncvar_put' in package 'ncdf4' does not exist and so has been treated as a topic
Rd warning: /builddir/build/BUILD/ncdf4/ncdf4/man/ncvar_def.Rd:114: file link 'ncvar_put' in package 'ncdf4' does not exist and so has been treated as a topic
    ncvar_get                               html  
Rd warning: /builddir/build/BUILD/ncdf4/ncdf4/man/ncvar_get.Rd:80: file link 'ncvar_put' in package 'ncdf4' does not exist and so has been treated as a topic
    ncvar_rename                            html  
    print.ncdf4                             html  
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ncdf4)
+ test -d ncdf4/src
+ cd ncdf4/src
+ rm -f ncdf.o ncdf4.so
+ rm -f /builddir/build/BUILDROOT/R-ncdf4-1.17-1.fc29.arm/usr/lib/R/library/R.css
+ chrpath -d /builddir/build/BUILDROOT/R-ncdf4-1.17-1.fc29.arm/usr/lib/R/library/ncdf4/libs/ncdf4.so
+ /usr/lib/rpm/find-debuginfo.sh -j4 --strict-build-id -m -i --build-id-seed 1.17-1.fc29 --unique-debug-suffix -1.17-1.fc29.arm --unique-debug-src-base R-ncdf4-1.17-1.fc29.arm --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/ncdf4
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/R-ncdf4-1.17-1.fc29.arm/usr/lib/R/library/ncdf4/libs/ncdf4.so
extracting debug info from /builddir/build/BUILDROOT/R-ncdf4-1.17-1.fc29.arm/usr/lib/R/library/ncdf4/libs/ncdf4.so
/usr/lib/rpm/sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match.
175 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
/sbin/ldconfig: Warning: ignoring configuration file that cannot be opened: /etc/ld.so.conf: No such file or directory
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 1
+ /usr/lib/rpm/brp-python-hardlink
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.PHU6HL
+ umask 022
+ cd /builddir/build/BUILD
+ cd ncdf4
+ /usr/bin/R CMD check ncdf4
* using log directory '/builddir/build/BUILD/ncdf4/ncdf4.Rcheck'
* using R version 3.6.1 (2019-07-05)
* using platform: armv7hl-redhat-linux-gnu (32-bit)
* using session charset: ASCII
* checking for file 'ncdf4/DESCRIPTION' ... OK
* this is package 'ncdf4' version '1.17'
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
  cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
Warning: unable to access index for repository https://bioconductor.org/packages/3.9/bioc/src/contrib:
  cannot open URL 'https://bioconductor.org/packages/3.9/bioc/src/contrib/PACKAGES'
Warning: unable to access index for repository https://bioconductor.org/packages/3.9/data/annotation/src/contrib:
  cannot open URL 'https://bioconductor.org/packages/3.9/data/annotation/src/contrib/PACKAGES'
Warning: unable to access index for repository https://bioconductor.org/packages/3.9/data/experiment/src/contrib:
  cannot open URL 'https://bioconductor.org/packages/3.9/data/experiment/src/contrib/PACKAGES'
 OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'ncdf4' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... WARNING
Subdirectory 'inst' contains no files.
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in shell scripts ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... NOTE
Package has both 'src/Makevars.in' and 'src/Makevars'.
Installation with --no-configure' is unlikely to work.  If you intended
'src/Makevars' to be used on Windows, rename it to 'src/Makevars.win'
otherwise remove it.  If 'configure' created 'src/Makevars', you need a
'cleanup' script.
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 1 NOTE
See
  '/builddir/build/BUILD/ncdf4/ncdf4.Rcheck/00check.log'
for details.
+ exit 0
Processing files: R-ncdf4-1.17-1.fc29.armv7hl
Provides: R-ncdf4 = 1.17-1.fc29 R-ncdf4(armv7hl-32) = 1.17-1.fc29
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: ld-linux-armhf.so.3 ld-linux-armhf.so.3(GLIBC_2.4) libR.so libc.so.6 libc.so.6(GLIBC_2.4) libgcc_s.so.1 libgcc_s.so.1(GCC_3.5) libnetcdf.so.11 rtld(GNU_HASH)
Processing files: R-ncdf4-debugsource-1.17-1.fc29.armv7hl
Provides: R-ncdf4-debugsource = 1.17-1.fc29 R-ncdf4-debugsource(armv7hl-32) = 1.17-1.fc29
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: R-ncdf4-debuginfo-1.17-1.fc29.armv7hl
Provides: R-ncdf4-debuginfo = 1.17-1.fc29 R-ncdf4-debuginfo(armv7hl-32) = 1.17-1.fc29 debuginfo(build-id) = 2a2ffb7cfad8125e3b81883e707ef4ff6ce9e271
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: R-ncdf4-debugsource(armv7hl-32) = 1.17-1.fc29
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-ncdf4-1.17-1.fc29.arm
Wrote: /builddir/build/RPMS/R-ncdf4-1.17-1.fc29.armv7hl.rpm
Wrote: /builddir/build/RPMS/R-ncdf4-debugsource-1.17-1.fc29.armv7hl.rpm
Wrote: /builddir/build/RPMS/R-ncdf4-debuginfo-1.17-1.fc29.armv7hl.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.4a7Shf
+ umask 022
+ cd /builddir/build/BUILD
+ cd ncdf4
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/R-ncdf4-1.17-1.fc29.arm
+ exit 0
Child return code was: 0