Mock Version: 1.4.18
Mock Version: 1.4.18
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target noarch --nodeps /builddir/build/SPECS/R-knitr.spec'], chrootPath='/var/lib/mock/f29-build-17563151-1267108/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0xb4fe0a50>timeout=172800uid=1000gid=425user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target noarch --nodeps /builddir/build/SPECS/R-knitr.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False
Building target platforms: noarch
Building for target noarch
Wrote: /builddir/build/SRPMS/R-knitr-1.25-1.fc29.src.rpm
Child return code was: 0
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target noarch --nodeps /builddir/build/SPECS/R-knitr.spec'], chrootPath='/var/lib/mock/f29-build-17563151-1267108/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0xb4fe0a50>timeout=172800uid=1000gid=425user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target noarch --nodeps /builddir/build/SPECS/R-knitr.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False
Building target platforms: noarch
Building for target noarch
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.pKJe6a
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf knitr
+ /usr/bin/mkdir -p knitr
+ cd knitr
+ /usr/bin/gzip -dc /builddir/build/SOURCES/knitr_1.25.tar.gz
+ /usr/bin/tar -xof -
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ rm knitr/inst/examples/knit-all.R
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.01TBcl
+ umask 022
+ cd /builddir/build/BUILD
+ cd knitr
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.jSqXby
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/R-knitr-1.25-1.fc29.noarch '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/R-knitr-1.25-1.fc29.noarch
++ dirname /builddir/build/BUILDROOT/R-knitr-1.25-1.fc29.noarch
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/R-knitr-1.25-1.fc29.noarch
+ cd knitr
+ mkdir -p /builddir/build/BUILDROOT/R-knitr-1.25-1.fc29.noarch/usr/share/R/library
+ /usr/bin/R CMD INSTALL -l /builddir/build/BUILDROOT/R-knitr-1.25-1.fc29.noarch/usr/share/R/library knitr
* installing *source* package 'knitr' ...
file 'inst/examples/knit-all.R' is missing
** R
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'knitr'
    finding HTML links ... done
    Sweave2knitr                            html  
    all_labels                              html  
    all_patterns                            html  
    asis_output                             html  
    cache_engines                           html  
    chunk_hook                              html  
Rd warning: /builddir/build/BUILD/knitr/knitr/man/chunk_hook.Rd:60: file link 'recordPlot' in package 'grDevices' does not exist and so has been treated as a topic
    clean_cache                             html  
    combine_words                           html  
    finding level-2 HTML links ... done
    current_input                           html  
    dep_auto                                html  
    dep_prev                                html  
    engine_output                           html  
    fig_chunk                               html  
    fig_path                                html  
    hook_animation                          html  
    hook_document                           html  
    hook_plot                               html  
Rd warning: /builddir/build/BUILD/knitr/knitr/man/hook_plot.Rd:48: file link 'recordPlot' in package 'grDevices' does not exist and so has been treated as a topic
    image_uri                               html  
    imgur_upload                            html  
    include_graphics                        html  
    include_url                             html  
    inline_expr                             html  
    kable                                   html  
    knit                                    html  
Rd warning: /builddir/build/BUILD/knitr/knitr/man/knit.Rd:21: file link 'Stangle' in package 'utils' does not exist and so has been treated as a topic
    knit2html                               html  
    knit2pandoc                             html  
Rd warning: /builddir/build/BUILD/knitr/knitr/man/knit2pandoc.Rd:19: file link 'Stangle' in package 'utils' does not exist and so has been treated as a topic
    knit2pdf                                html  
    knit2wp                                 html  
    knit_child                              html  
    knit_code                               html  
    knit_engines                            html  
    knit_exit                               html  
    knit_expand                             html  
    knit_filter                             html  
    knit_global                             html  
    knit_hooks                              html  
    knit_meta                               html  
    knit_params                             html  
    knit_params_yaml                        html  
    knit_patterns                           html  
    knit_print                              html  
    knit_rd                                 html  
    knit_theme                              html  
    knit_watch                              html  
    knitr-package                           html  
    load_cache                              html  
    opts_chunk                              html  
    opts_hooks                              html  
    opts_knit                               html  
    opts_template                           html  
    output_hooks                            html  
    output_type                             html  
    pandoc                                  html  
    pat_fun                                 html  
    plot_crop                               html  
    rand_seed                               html  
    raw_block                               html  
    raw_output                              html  
    read_chunk                              html  
    read_rforge                             html  
    rocco                                   html  
    rst2pdf                                 html  
    set_alias                               html  
    set_header                              html  
    set_parent                              html  
    spin                                    html  
    spin_child                              html  
    stitch                                  html  
    vignette_engines                        html  
    wrap_rmd                                html  
    write_bib                               html  
Rd warning: /builddir/build/BUILD/knitr/knitr/man/write_bib.Rd:32: file link 'toBibtex' in package 'utils' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (knitr)
+ test -d knitr/src
+ rm -f /builddir/build/BUILDROOT/R-knitr-1.25-1.fc29.noarch/usr/share/R/library/R.css
+ mkdir /builddir/build/BUILDROOT/R-knitr-1.25-1.fc29.noarch/usr/bin
+ sed -e '1d;2i#!/usr/bin/Rscript' /builddir/build/BUILDROOT/R-knitr-1.25-1.fc29.noarch/usr/share/R/library/knitr/bin/knit
+ chmod --reference=/builddir/build/BUILDROOT/R-knitr-1.25-1.fc29.noarch/usr/share/R/library/knitr/bin/knit /builddir/build/BUILDROOT/R-knitr-1.25-1.fc29.noarch/usr/bin/knit
+ touch -r /builddir/build/BUILDROOT/R-knitr-1.25-1.fc29.noarch/usr/share/R/library/knitr/bin/knit /builddir/build/BUILDROOT/R-knitr-1.25-1.fc29.noarch/usr/bin/knit
+ rm -r /builddir/build/BUILDROOT/R-knitr-1.25-1.fc29.noarch/usr/share/R/library/knitr/bin
+ /usr/lib/rpm/find-debuginfo.sh -j4 --strict-build-id -m -i --build-id-seed 1.25-1.fc29 --unique-debug-suffix -1.25-1.fc29.noarch --unique-debug-src-base R-knitr-1.25-1.fc29.noarch --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/knitr
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
/sbin/ldconfig: Warning: ignoring configuration file that cannot be opened: /etc/ld.so.conf: No such file or directory
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 1
+ /usr/lib/rpm/brp-python-hardlink
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.RFnuYu
+ umask 022
+ cd /builddir/build/BUILD
+ cd knitr
+ export _R_CHECK_FORCE_SUGGESTS_=0
+ _R_CHECK_FORCE_SUGGESTS_=0
+ /usr/bin/R CMD check knitr
* using log directory '/builddir/build/BUILD/knitr/knitr.Rcheck'
* using R version 3.5.3 (2019-03-11)
* using platform: armv7hl-redhat-linux-gnu (32-bit)
* using session charset: ASCII
* checking for file 'knitr/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'knitr' version '1.25'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
  cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
Warning: unable to access index for repository https://bioconductor.org/packages/3.8/bioc/src/contrib:
  cannot open URL 'https://bioconductor.org/packages/3.8/bioc/src/contrib/PACKAGES'
Warning: unable to access index for repository https://bioconductor.org/packages/3.8/data/annotation/src/contrib:
  cannot open URL 'https://bioconductor.org/packages/3.8/data/annotation/src/contrib/PACKAGES'
Warning: unable to access index for repository https://bioconductor.org/packages/3.8/data/experiment/src/contrib:
  cannot open URL 'https://bioconductor.org/packages/3.8/data/experiment/src/contrib/PACKAGES'
 NOTE
Packages suggested but not available for checking:
  'rgl' 'webshot' 'reticulate' 'JuliaCall' 'magick' 'gifski' 'httr'
  'tibble' 'sass' 'styler'
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'knitr' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... WARNING
Error: package or namespace load failed for 'knitr' in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
 there is no package called 'xfun'
Execution halted
It looks like this package has a loading problem when not on .libPaths:
see the messages for details.
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... WARNING
Unknown package 'rgl' in Rd xrefs
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... WARNING
checking a package with encoding  'UTF-8'  in an ASCII locale
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'run-all.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ...
   'knit_print.Rmd' using 'UTF-8' ... OK
   'knitr-intro.Rmd' using 'UTF-8' ... OK
   'knitr-refcard.Rmd' using 'UTF-8' ... OK
   'datatables.Rmd' using 'UTF-8' ... OK
   'knit_expand.Rmd' using 'UTF-8' ... OK
   'knitr-html.Rhtml' using 'UTF-8' ... OK
   'knitr-markdown.Rmd' using 'UTF-8' ... OK
   'docco-classic.Rmd' using 'UTF-8' ... OK
   'docco-linear.Rmd' using 'UTF-8' ... OK
 NONE
* checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
! LaTeX Error: Command \textquotesingle unavailable in encoding T1.
Error: processing vignette 'knitr-refcard.Rmd' failed with diagnostics:
Failed to compile knitr-refcard.tex. See https://yihui.name/tinytex/r/#debugging for debugging tips. See knitr-refcard.log for more info.
Execution halted
* checking PDF version of manual ... OK
* DONE
Status: 4 WARNINGs, 1 NOTE
See
  '/builddir/build/BUILD/knitr/knitr.Rcheck/00check.log'
for details.
+ exit 0
Processing files: R-knitr-1.25-1.fc29.noarch
Provides: R-knitr = 1.25-1.fc29
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/Rscript
Recommends: tex(framed.sty) tex(listings.sty)
Suggests: R-DBI >= 0.4.1 R-JuliaCall >= 0.11.1 R-codetools R-digest R-formatR R-gifski R-htmlwidgets >= 0.7 R-httr R-jpeg R-magick R-png R-reticulate >= 1.4 R-rgl >= 0.95.1201 R-rmarkdown R-showtext R-styler R-tibble R-tikzDevice >= 0.10 R-tinytex R-webshot R-xml2 >= 1.2.0
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-knitr-1.25-1.fc29.noarch
Wrote: /builddir/build/RPMS/R-knitr-1.25-1.fc29.noarch.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.j9bkGL
+ umask 022
+ cd /builddir/build/BUILD
+ cd knitr
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/R-knitr-1.25-1.fc29.noarch
+ exit 0
Child return code was: 0