Mock Version: 1.4.19
Mock Version: 1.4.19
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target aarch64 --nodeps /builddir/build/SPECS/R-gee.spec'], chrootPath='/var/lib/mock/f29-build-18174219-1297241/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0xffffa29ba510>timeout=201600uid=1000gid=425user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target aarch64 --nodeps /builddir/build/SPECS/R-gee.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False
Building target platforms: aarch64
Building for target aarch64
Wrote: /builddir/build/SRPMS/R-gee-4.13.20-1.fc29.src.rpm
Child return code was: 0
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target aarch64 --nodeps /builddir/build/SPECS/R-gee.spec'], chrootPath='/var/lib/mock/f29-build-18174219-1297241/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0xffffa29ba510>timeout=201600uid=1000gid=425user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target aarch64 --nodeps /builddir/build/SPECS/R-gee.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False
Building target platforms: aarch64
Building for target aarch64
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.8KjgHo
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf gee
+ /usr/bin/mkdir -p gee
+ cd gee
+ /usr/bin/gzip -dc /builddir/build/SOURCES/gee_4.13-20.tar.gz
+ /usr/bin/tar -xof -
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.yW4HEG
+ umask 022
+ cd /builddir/build/BUILD
+ cd gee
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.EF6klY
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/R-gee-4.13.20-1.fc29.aarch64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/R-gee-4.13.20-1.fc29.aarch64
++ dirname /builddir/build/BUILDROOT/R-gee-4.13.20-1.fc29.aarch64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/R-gee-4.13.20-1.fc29.aarch64
+ cd gee
+ mkdir -p /builddir/build/BUILDROOT/R-gee-4.13.20-1.fc29.aarch64/usr/lib64/R/library
+ /usr/bin/R CMD INSTALL -l /builddir/build/BUILDROOT/R-gee-4.13.20-1.fc29.aarch64/usr/lib64/R/library gee
* installing *source* package 'gee' ...
** package 'gee' successfully unpacked and MD5 sums checked
** using staged installation
** libs
gfortran -fno-optimize-sibling-calls  -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules  -c dgedi.f -o dgedi.o
gfortran -fno-optimize-sibling-calls  -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules  -c dgefa.f -o dgefa.o
gcc -I"/usr/include/R" -DNDEBUG   -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection  -c ugee.c -o ugee.o
ugee.c: In function 'Cgee':
ugee.c:371:11: warning: 'lag_wts' may be used uninitialized in this function [-Wmaybe-uninitialized]
   alpha = VC_GEE_matadd(alpha, VC_GEE_transp(VC_GEE_px1_times_pxq (VC_GEE_transp(lag_wts), VC_GEE_transp(VC_GEE_covlag(ei, alpha_VC_GEE_bandwidth, 0)))));
           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ugee.c:856:15: warning: 'Aop' may be used uninitialized in this function [-Wmaybe-uninitialized]
     mat->data = (double *)NULL;
               ^
ugee.c:46:35: note: 'Aop' was declared here
     MATRIX *tempmat1, *tempmat2, *Aop, *Dop, *zi, *DRop;
                                   ^~~
ugee.c:856:15: warning: 'R' may be used uninitialized in this function [-Wmaybe-uninitialized]
     mat->data = (double *)NULL;
               ^
ugee.c:42:13: note: 'R' was declared here
     MATRIX *R, *tmpR, *Ri;
             ^
gcc -shared -L/usr/lib64/R/lib -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o gee.so dgedi.o dgefa.o ugee.o -L/usr/lib64/R/lib -lRblas -lgfortran -lm -lgfortran -lm -L/usr/lib64/R/lib -lR
installing to /builddir/build/BUILDROOT/R-gee-4.13.20-1.fc29.aarch64/usr/lib64/R/library/00LOCK-gee/00new/gee/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'gee'
    finding HTML links ... done
    gee                                     html  
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (gee)
+ test -d gee/src
+ cd gee/src
+ rm -f dgedi.o dgefa.o ugee.o gee.so
+ rm -f /builddir/build/BUILDROOT/R-gee-4.13.20-1.fc29.aarch64/usr/lib64/R/library/R.css
+ /usr/lib/rpm/find-debuginfo.sh -j8 --strict-build-id -m -i --build-id-seed 4.13.20-1.fc29 --unique-debug-suffix -4.13.20-1.fc29.aarch64 --unique-debug-src-base R-gee-4.13.20-1.fc29.aarch64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/gee
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/R-gee-4.13.20-1.fc29.aarch64/usr/lib64/R/library/gee/libs/gee.so
extracting debug info from /builddir/build/BUILDROOT/R-gee-4.13.20-1.fc29.aarch64/usr/lib64/R/library/gee/libs/gee.so
/usr/lib/rpm/sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match.
101 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
/sbin/ldconfig: Warning: ignoring configuration file that cannot be opened: /etc/ld.so.conf: No such file or directory
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 1
+ /usr/lib/rpm/brp-python-hardlink
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.KLdNkq
+ umask 022
+ cd /builddir/build/BUILD
+ cd gee
+ /usr/bin/R CMD check gee
* using log directory '/builddir/build/BUILD/gee/gee.Rcheck'
* using R version 3.6.1 (2019-07-05)
* using platform: aarch64-redhat-linux-gnu (64-bit)
* using session charset: ASCII
* checking for file 'gee/DESCRIPTION' ... OK
* this is package 'gee' version '4.13-20'
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
  cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
Warning: unable to access index for repository https://bioconductor.org/packages/3.9/bioc/src/contrib:
  cannot open URL 'https://bioconductor.org/packages/3.9/bioc/src/contrib/PACKAGES'
Warning: unable to access index for repository https://bioconductor.org/packages/3.9/data/annotation/src/contrib:
  cannot open URL 'https://bioconductor.org/packages/3.9/data/annotation/src/contrib/PACKAGES'
Warning: unable to access index for repository https://bioconductor.org/packages/3.9/data/experiment/src/contrib:
  cannot open URL 'https://bioconductor.org/packages/3.9/data/experiment/src/contrib/PACKAGES'
 OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'gee' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking examples ... OK
* checking differences from 'gee-Ex.Rout' to 'gee-Ex.Rout.save' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'divergence.R'
  Comparing 'divergence.Rout' to 'divergence.Rout.save' ... OK
  Running 'tests.R'
  Comparing 'tests.Rout' to 'tests.Rout.save' ... OK
 OK
* checking PDF version of manual ... OK
* DONE
Status: OK
+ exit 0
Processing files: R-gee-4.13.20-1.fc29.aarch64
Provides: R-gee = 4.13.20-1.fc29 R-gee(aarch-64) = 4.13.20-1.fc29
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libR.so()(64bit) libRblas.so()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libgfortran.so.5()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) rtld(GNU_HASH)
Suggests: R-MASS
Processing files: R-gee-debugsource-4.13.20-1.fc29.aarch64
Provides: R-gee-debugsource = 4.13.20-1.fc29 R-gee-debugsource(aarch-64) = 4.13.20-1.fc29
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: R-gee-debuginfo-4.13.20-1.fc29.aarch64
Provides: R-gee-debuginfo = 4.13.20-1.fc29 R-gee-debuginfo(aarch-64) = 4.13.20-1.fc29 debuginfo(build-id) = 4b9d2924a3028a0ceb77d1808c7bf269c09f2113
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: R-gee-debugsource(aarch-64) = 4.13.20-1.fc29
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-gee-4.13.20-1.fc29.aarch64
Wrote: /builddir/build/RPMS/R-gee-4.13.20-1.fc29.aarch64.rpm
Wrote: /builddir/build/RPMS/R-gee-debugsource-4.13.20-1.fc29.aarch64.rpm
Wrote: /builddir/build/RPMS/R-gee-debuginfo-4.13.20-1.fc29.aarch64.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.J2fZ0J
+ umask 022
+ cd /builddir/build/BUILD
+ cd gee
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/R-gee-4.13.20-1.fc29.aarch64
+ exit 0
Child return code was: 0