Mock Version: 1.4.16
Mock Version: 1.4.16
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target noarch --nodeps /builddir/build/SPECS/R-foghorn.spec'], chrootPath='/var/lib/mock/f31-build-16965936-1222982/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7f31fa5e53c8>timeout=172800uid=1000gid=425user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target noarch --nodeps /builddir/build/SPECS/R-foghorn.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False
Building target platforms: noarch
Building for target noarch
setting SOURCE_DATE_EPOCH=1563926400
Wrote: /builddir/build/SRPMS/R-foghorn-1.1.0-2.fc31.src.rpm
Child return code was: 0
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target noarch --nodeps /builddir/build/SPECS/R-foghorn.spec'], chrootPath='/var/lib/mock/f31-build-16965936-1222982/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7f31fa5e53c8>timeout=172800uid=1000gid=425user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target noarch --nodeps /builddir/build/SPECS/R-foghorn.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False
Building target platforms: noarch
Building for target noarch
setting SOURCE_DATE_EPOCH=1563926400
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.5hYUWQ
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf foghorn
+ /usr/bin/mkdir -p foghorn
+ cd foghorn
+ /usr/bin/gzip -dc /builddir/build/SOURCES/foghorn_1.1.0.tar.gz
+ /usr/bin/tar -xof -
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ sed -i 's/covr, //g' foghorn/DESCRIPTION
+ RPM_EC=0
BUILDSTDERR: ++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.jodS9P
+ umask 022
+ cd /builddir/build/BUILD
+ cd foghorn
+ RPM_EC=0
BUILDSTDERR: ++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.L5MC5P
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/R-foghorn-1.1.0-2.fc31.noarch '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/R-foghorn-1.1.0-2.fc31.noarch
BUILDSTDERR: ++ dirname /builddir/build/BUILDROOT/R-foghorn-1.1.0-2.fc31.noarch
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/R-foghorn-1.1.0-2.fc31.noarch
+ cd foghorn
+ mkdir -p /builddir/build/BUILDROOT/R-foghorn-1.1.0-2.fc31.noarch/usr/share/R/library
+ /usr/bin/R CMD INSTALL -l /builddir/build/BUILDROOT/R-foghorn-1.1.0-2.fc31.noarch/usr/share/R/library foghorn
BUILDSTDERR: * installing *source* package 'foghorn' ...
BUILDSTDERR: ** using staged installation
BUILDSTDERR: ** R
BUILDSTDERR: ** inst
BUILDSTDERR: ** byte-compile and prepare package for lazy loading
BUILDSTDERR: ** help
BUILDSTDERR: *** installing help indices
BUILDSTDERR:     finding HTML links ... done
BUILDSTDERR: *** copying figures
BUILDSTDERR: ** building package indices
BUILDSTDERR: ** installing vignettes
BUILDSTDERR: ** testing if installed package can be loaded from temporary location
BUILDSTDERR: ** testing if installed package can be loaded from final location
BUILDSTDERR: ** testing if installed package keeps a record of temporary installation path
BUILDSTDERR: * DONE (foghorn)
+ test -d foghorn/src
+ rm -f /builddir/build/BUILDROOT/R-foghorn-1.1.0-2.fc31.noarch/usr/share/R/library/R.css
+ /usr/lib/rpm/find-debuginfo.sh -j6 --strict-build-id -m -i --build-id-seed 1.1.0-2.fc31 --unique-debug-suffix -1.1.0-2.fc31.noarch --unique-debug-src-base R-foghorn-1.1.0-2.fc31.noarch --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/foghorn
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/redhat/brp-python-bytecompile /usr/bin/python 1 0
+ /usr/lib/rpm/brp-python-hardlink
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
file 'DESCRIPTION' has the wrong MD5 checksum
  converting help for package 'foghorn'
    check_cran_results                      html  
    cran_details                            html  
    cran_incoming                           html  
    cran_results                            html  
    foghorn                                 html  
    summary_cran_results                    html  
    visit_cran_check                        html  
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.a2zMNT
+ umask 022
+ cd /builddir/build/BUILD
+ cd foghorn
+ /usr/bin/R CMD check foghorn --no-tests --no-vignettes
BUILDSTDERR: Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
BUILDSTDERR:   cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
BUILDSTDERR: Warning: unable to access index for repository https://bioconductor.org/packages/3.9/bioc/src/contrib:
BUILDSTDERR:   cannot open URL 'https://bioconductor.org/packages/3.9/bioc/src/contrib/PACKAGES'
BUILDSTDERR: Warning: unable to access index for repository https://bioconductor.org/packages/3.9/data/annotation/src/contrib:
BUILDSTDERR:   cannot open URL 'https://bioconductor.org/packages/3.9/data/annotation/src/contrib/PACKAGES'
BUILDSTDERR: Warning: unable to access index for repository https://bioconductor.org/packages/3.9/data/experiment/src/contrib:
BUILDSTDERR:   cannot open URL 'https://bioconductor.org/packages/3.9/data/experiment/src/contrib/PACKAGES'
BUILDSTDERR: See
BUILDSTDERR:   '/builddir/build/BUILD/foghorn/foghorn.Rcheck/00check.log'
BUILDSTDERR: for details.
+ RPM_EC=0
BUILDSTDERR: ++ jobs -p
+ exit 0
* using log directory '/builddir/build/BUILD/foghorn/foghorn.Rcheck'
* using R version 3.6.0 (2019-04-26)
* using platform: x86_64-redhat-linux-gnu (64-bit)
* using session charset: ASCII
* using options '--no-tests --no-vignettes'
* checking for file 'foghorn/DESCRIPTION' ... OK
* this is package 'foghorn' version '1.1.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'foghorn' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... WARNING
Warning in Sys.setlocale("LC_CTYPE", "en_US.UTF-8") :
  OS reports request to set locale to "en_US.UTF-8" cannot be honored
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... WARNING
Error: package or namespace load failed for 'foghorn' in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
 there is no package called 'clisymbols'
Execution halted
It looks like this package has a loading problem when not on .libPaths:
see the messages for details.
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... WARNING
checking a package with encoding  'UTF-8'  in an ASCII locale
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... SKIPPED
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 3 WARNINGs
Processing files: R-foghorn-1.1.0-2.fc31.noarch
Provides: R(foghorn) = 1.1.0 R-foghorn = 1.1.0-2.fc31
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Suggests: R-dplyr R-knitr R-progress R-rmarkdown R-testthat
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-foghorn-1.1.0-2.fc31.noarch
Wrote: /builddir/build/RPMS/R-foghorn-1.1.0-2.fc31.noarch.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.7GS2ST
+ umask 022
+ cd /builddir/build/BUILD
+ cd foghorn
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/R-foghorn-1.1.0-2.fc31.noarch
+ RPM_EC=0
BUILDSTDERR: ++ jobs -p
+ exit 0
Child return code was: 0