Mock Version: 1.4.21 Mock Version: 1.4.21 Mock Version: 1.4.21 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target i686 --nodeps /builddir/build/SPECS/R-RInside.spec'], chrootPath='/var/lib/mock/f30-build-19939887-1413449/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=201600uid=1000gid=425user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target i686 --nodeps /builddir/build/SPECS/R-RInside.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False Building target platforms: i686 Building for target i686 Wrote: /builddir/build/SRPMS/R-RInside-0.2.16-1.fc30.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target i686 --nodeps /builddir/build/SPECS/R-RInside.spec'], chrootPath='/var/lib/mock/f30-build-19939887-1413449/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=201600uid=1000gid=425user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target i686 --nodeps /builddir/build/SPECS/R-RInside.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False Building target platforms: i686 Building for target i686 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.PHSB25 + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf R-RInside-0.2.16 + /usr/bin/mkdir -p R-RInside-0.2.16 + cd R-RInside-0.2.16 + /usr/bin/gzip -dc /builddir/build/SOURCES/RInside_0.2.16.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . Patch #0 (R-RInside-LdFlags.patch): + echo 'Patch #0 (R-RInside-LdFlags.patch):' + /usr/bin/patch --no-backup-if-mismatch -p0 --fuzz=0 patching file RInside/R/RInsidePaths.R + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.EfHG4W + umask 022 + cd /builddir/build/BUILD + cd R-RInside-0.2.16 + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.APA26N + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/R-RInside-0.2.16-1.fc30.i386 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/R-RInside-0.2.16-1.fc30.i386 ++ dirname /builddir/build/BUILDROOT/R-RInside-0.2.16-1.fc30.i386 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/R-RInside-0.2.16-1.fc30.i386 + cd R-RInside-0.2.16 + mkdir -p /builddir/build/BUILDROOT/R-RInside-0.2.16-1.fc30.i386/usr/lib/R/library + /usr/bin/R CMD INSTALL -l /builddir/build/BUILDROOT/R-RInside-0.2.16-1.fc30.i386/usr/lib/R/library RInside * installing *source* package 'RInside' ... file 'R/RInsidePaths.R' has the wrong MD5 checksum ** using staged installation ** libs /usr/lib/R/bin/Rscript tools/RInsideAutoloads.r > RInsideAutoloads.h /usr/lib/R/bin/Rscript tools/RInsideEnvVars.r > RInsideEnvVars.h g++ -m32 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I. -I../inst/include/ -I"/usr/lib/R/library/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c MemBuf.cpp -o MemBuf.o g++ -m32 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I. -I../inst/include/ -I"/usr/lib/R/library/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c RInside.cpp -o RInside.o g++ -m32 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I. -I../inst/include/ -I"/usr/lib/R/library/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c RInside_C.cpp -o RInside_C.o g++ -m32 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I. -I../inst/include/ -I"/usr/lib/R/library/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c RcppExports.cpp -o RcppExports.o g++ -m32 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I. -I../inst/include/ -I"/usr/lib/R/library/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c compiler.cpp -o compiler.o g++ -m32 -std=gnu++11 -shared -L/usr/lib/R/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o RInside.so MemBuf.o RInside.o RInside_C.o RcppExports.o compiler.o -L/usr/lib/R/lib -lR g++ -m32 -std=gnu++11 -o libRInside.so MemBuf.o RInside.o RInside_C.o RcppExports.o compiler.o -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -L"/usr/lib/R/lib" -lR ar qc libRInside.a MemBuf.o RInside.o RInside_C.o RcppExports.o compiler.o cp libRInside.so ../inst/lib cp libRInside.a ../inst/lib rm libRInside.so libRInside.a installing to /builddir/build/BUILDROOT/R-RInside-0.2.16-1.fc30.i386/usr/lib/R/library/00LOCK-RInside/00new/RInside/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'RInside' finding HTML links ... done RInside-package html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RInside) + test -d RInside/src + cd RInside/src + rm -f MemBuf.o RInside.o RInside_C.o RcppExports.o compiler.o RInside.so + rm -rf /builddir/build/BUILDROOT/R-RInside-0.2.16-1.fc30.i386/usr/lib/R/library/R.css + rm -rf RInside/inst/lib + rm /builddir/build/BUILDROOT/R-RInside-0.2.16-1.fc30.i386/usr/lib/R/library/RInside/lib/libRInside.a + mv /builddir/build/BUILDROOT/R-RInside-0.2.16-1.fc30.i386/usr/lib/R/library/RInside/lib/libRInside.so /builddir/build/BUILDROOT/R-RInside-0.2.16-1.fc30.i386/usr/lib + rmdir /builddir/build/BUILDROOT/R-RInside-0.2.16-1.fc30.i386/usr/lib/R/library/RInside/lib + /usr/lib/rpm/find-debuginfo.sh -j48 --strict-build-id -m -i --build-id-seed 0.2.16-1.fc30 --unique-debug-suffix -0.2.16-1.fc30.i386 --unique-debug-src-base R-RInside-0.2.16-1.fc30.i386 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/R-RInside-0.2.16 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/R-RInside-0.2.16-1.fc30.i386/usr/lib/R/library/RInside/libs/RInside.so extracting debug info from /builddir/build/BUILDROOT/R-RInside-0.2.16-1.fc30.i386/usr/lib/R/library/RInside/libs/RInside.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/R-RInside-0.2.16-1.fc30.i386/usr/lib/libRInside.so extracting debug info from /builddir/build/BUILDROOT/R-RInside-0.2.16-1.fc30.i386/usr/lib/libRInside.so /usr/lib/rpm/sepdebugcrcfix: Updated 2 CRC32s, 0 CRC32s did match. 102 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 0 + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-mangle-shebangs Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.d3K46j + umask 022 + cd /builddir/build/BUILD + cd R-RInside-0.2.16 + /usr/bin/R CMD check RInside * using log directory '/builddir/build/BUILD/R-RInside-0.2.16/RInside.Rcheck' * using R version 3.6.3 (2020-02-29) * using platform: i686-redhat-linux-gnu (32-bit) * using session charset: ASCII * checking for file 'RInside/DESCRIPTION' ... OK * this is package 'RInside' version '0.2.16' * checking package namespace information ... OK * checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib: cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES' Warning: unable to access index for repository https://bioconductor.org/packages/3.10/bioc/src/contrib: cannot open URL 'https://bioconductor.org/packages/3.10/bioc/src/contrib/PACKAGES' Warning: unable to access index for repository https://bioconductor.org/packages/3.10/data/annotation/src/contrib: cannot open URL 'https://bioconductor.org/packages/3.10/data/annotation/src/contrib/PACKAGES' Warning: unable to access index for repository https://bioconductor.org/packages/3.10/data/experiment/src/contrib: cannot open URL 'https://bioconductor.org/packages/3.10/data/experiment/src/contrib/PACKAGES' OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package 'RInside' can be installed ... OK * checking installed package size ... NOTE installed size is 6.9Mb sub-directories of 1Mb or more: lib 4.7Mb libs 1.6Mb * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in shell scripts ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking include directives in Makefiles ... OK * checking compiled code ... WARNING File 'RInside/libs/RInside.so': Found 'abort', possibly from 'abort' (C) Objects: 'RInside.o', 'RcppExports.o' Found 'printf', possibly from 'printf' (C) Objects: 'RInside.o', 'RcppExports.o' Found 'srand', possibly from 'srand' (C) Object: 'RInside.o' File 'RInside/libs/RInside.so': Found non-API calls to R: 'R_CStackLimit', 'R_CleanTempDir', 'R_DefParams', 'R_ReplDLLdo1', 'R_ReplDLLinit', 'R_RunExitFinalizers', 'R_SetParams', 'R_SignalHandlers', 'R_TempDir', 'Rf_endEmbeddedR', 'Rf_initEmbeddedR' Compiled code should not call entry points which might terminate R nor write to stdout/stderr instead of to the console, nor use Fortran I/O nor system RNGs. Compiled code should not call non-API entry points in R. See 'Writing portable packages' in the 'Writing R Extensions' manual. * checking examples ... NONE * checking PDF version of manual ... OK * DONE Status: 1 WARNING, 1 NOTE See '/builddir/build/BUILD/R-RInside-0.2.16/RInside.Rcheck/00check.log' for details. + exit 0 Processing files: R-RInside-0.2.16-1.fc30.i686 warning: Duplicate build-ids /builddir/build/BUILDROOT/R-RInside-0.2.16-1.fc30.i386/usr/lib/R/library/RInside/libs/RInside.so and /builddir/build/BUILDROOT/R-RInside-0.2.16-1.fc30.i386/usr/lib/libRInside.so Provides: R-RInside = 0.2.16-1.fc30 R-RInside(x86-32) = 0.2.16-1.fc30 libRInside.so Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libR.so libc.so.6 libc.so.6(GLIBC_2.0) libc.so.6(GLIBC_2.1) libc.so.6(GLIBC_2.1.3) libc.so.6(GLIBC_2.4) libgcc_s.so.1 libgcc_s.so.1(GCC_3.0) libstdc++.so.6 libstdc++.so.6(CXXABI_1.3) libstdc++.so.6(GLIBCXX_3.4) libstdc++.so.6(GLIBCXX_3.4.11) libstdc++.so.6(GLIBCXX_3.4.20) libstdc++.so.6(GLIBCXX_3.4.21) libstdc++.so.6(GLIBCXX_3.4.9) rtld(GNU_HASH) Processing files: R-RInside-devel-0.2.16-1.fc30.i686 Provides: R-RInside-devel = 0.2.16-1.fc30 R-RInside-devel(x86-32) = 0.2.16-1.fc30 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-RInside-examples-0.2.16-1.fc30.i686 Provides: R-RInside-examples = 0.2.16-1.fc30 R-RInside-examples(x86-32) = 0.2.16-1.fc30 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-RInside-debugsource-0.2.16-1.fc30.i686 Provides: R-RInside-debugsource = 0.2.16-1.fc30 R-RInside-debugsource(x86-32) = 0.2.16-1.fc30 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-RInside-debuginfo-0.2.16-1.fc30.i686 warning: Duplicate build-ids /builddir/build/BUILDROOT/R-RInside-0.2.16-1.fc30.i386/usr/lib/debug/usr/lib/R/library/RInside/libs/RInside.so-0.2.16-1.fc30.i386.debug and /builddir/build/BUILDROOT/R-RInside-0.2.16-1.fc30.i386/usr/lib/debug/usr/lib/libRInside.so-0.2.16-1.fc30.i386.debug Provides: R-RInside-debuginfo = 0.2.16-1.fc30 R-RInside-debuginfo(x86-32) = 0.2.16-1.fc30 debuginfo(build-id) = 211291a681e8c0a9a5476afe57aa2abd3f4d0078 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: R-RInside-debugsource(x86-32) = 0.2.16-1.fc30 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-RInside-0.2.16-1.fc30.i386 Wrote: /builddir/build/RPMS/R-RInside-0.2.16-1.fc30.i686.rpm Wrote: /builddir/build/RPMS/R-RInside-devel-0.2.16-1.fc30.i686.rpm Wrote: /builddir/build/RPMS/R-RInside-examples-0.2.16-1.fc30.i686.rpm Wrote: /builddir/build/RPMS/R-RInside-debugsource-0.2.16-1.fc30.i686.rpm Wrote: /builddir/build/RPMS/R-RInside-debuginfo-0.2.16-1.fc30.i686.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.3LlCs0 + umask 022 + cd /builddir/build/BUILD + cd R-RInside-0.2.16 + /usr/bin/rm -rf /builddir/build/BUILDROOT/R-RInside-0.2.16-1.fc30.i386 + exit 0 Child return code was: 0