Mock Version: 1.3.4
Mock Version: 1.3.4
ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target aarch64 --nodeps /builddir/build/SPECS/python-biopython.spec'], chrootPath='/var/lib/mock/f27-build-11529007-858579/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0xffffa5f3fef0>timeout=172800uid=1000gid=425user='mockbuild'nspawn_args=[]printOutput=False)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target aarch64 --nodeps /builddir/build/SPECS/python-biopython.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False
Building target platforms: aarch64
Building for target aarch64
Wrote: /builddir/build/SRPMS/python-biopython-1.70-10.fc27.src.rpm
Child return code was: 0
ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target aarch64 --nodeps /builddir/build/SPECS/python-biopython.spec'], chrootPath='/var/lib/mock/f27-build-11529007-858579/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0xffffa5f3fef0>timeout=172800uid=1000gid=425user='mockbuild'nspawn_args=[]printOutput=False)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target aarch64 --nodeps /builddir/build/SPECS/python-biopython.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False
Building target platforms: aarch64
Building for target aarch64
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.ckAPuI
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf python-biopython-1.70
+ /usr/bin/mkdir -p python-biopython-1.70
+ cd python-biopython-1.70
+ /usr/bin/gzip -dc /builddir/build/SOURCES/biopython-biopython-170.tar.gz
+ /usr/bin/tar -xof -
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ mv biopython-biopython-170 python2
+ pushd python2
~/build/BUILD/python-biopython-1.70/python2 ~/build/BUILD/python-biopython-1.70
+ find Scripts -type f -exec chmod -x '{}' ';'
+ find Doc -type f -exec chmod -x '{}' ';'
+ find Doc -type f -exec sed -i 's/\r//' '{}' ';'
+ find Bio -type f -exec chmod -x '{}' ';'
+ find Bio -type f -name '*.py' -exec sed -i '/^#![ ]*\/usr\/bin\/.*$/ d' '{}' ';'
+ popd
~/build/BUILD/python-biopython-1.70
+ cp -a python2 python3
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.yIFA9G
+ umask 022
+ cd /builddir/build/BUILD
~/build/BUILD/python-biopython-1.70/python2 ~/build/BUILD/python-biopython-1.70
+ cd python-biopython-1.70
+ pushd python2
+ CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z,relro -Wl,-z,now'
+ /usr/bin/python2 setup.py build '--executable=/usr/bin/python2 -s'
running build
running build_py
creating build
creating build/lib.linux-aarch64-2.7
creating build/lib.linux-aarch64-2.7/Bio
copying Bio/triefind.py -> build/lib.linux-aarch64-2.7/Bio
copying Bio/File.py -> build/lib.linux-aarch64-2.7/Bio
copying Bio/Seq.py -> build/lib.linux-aarch64-2.7/Bio
copying Bio/_utils.py -> build/lib.linux-aarch64-2.7/Bio
copying Bio/kNN.py -> build/lib.linux-aarch64-2.7/Bio
copying Bio/SeqRecord.py -> build/lib.linux-aarch64-2.7/Bio
copying Bio/ParserSupport.py -> build/lib.linux-aarch64-2.7/Bio
copying Bio/SeqFeature.py -> build/lib.linux-aarch64-2.7/Bio
copying Bio/__init__.py -> build/lib.linux-aarch64-2.7/Bio
copying Bio/Index.py -> build/lib.linux-aarch64-2.7/Bio
copying Bio/MaxEntropy.py -> build/lib.linux-aarch64-2.7/Bio
copying Bio/pairwise2.py -> build/lib.linux-aarch64-2.7/Bio
copying Bio/bgzf.py -> build/lib.linux-aarch64-2.7/Bio
copying Bio/MarkovModel.py -> build/lib.linux-aarch64-2.7/Bio
copying Bio/NaiveBayes.py -> build/lib.linux-aarch64-2.7/Bio
copying Bio/LogisticRegression.py -> build/lib.linux-aarch64-2.7/Bio
copying Bio/DocSQL.py -> build/lib.linux-aarch64-2.7/Bio
creating build/lib.linux-aarch64-2.7/Bio/Align
copying Bio/Align/__init__.py -> build/lib.linux-aarch64-2.7/Bio/Align
copying Bio/Align/AlignInfo.py -> build/lib.linux-aarch64-2.7/Bio/Align
creating build/lib.linux-aarch64-2.7/Bio/Align/Applications
copying Bio/Align/Applications/_Prank.py -> build/lib.linux-aarch64-2.7/Bio/Align/Applications
copying Bio/Align/Applications/_Clustalw.py -> build/lib.linux-aarch64-2.7/Bio/Align/Applications
copying Bio/Align/Applications/_Probcons.py -> build/lib.linux-aarch64-2.7/Bio/Align/Applications
copying Bio/Align/Applications/_Dialign.py -> build/lib.linux-aarch64-2.7/Bio/Align/Applications
copying Bio/Align/Applications/__init__.py -> build/lib.linux-aarch64-2.7/Bio/Align/Applications
copying Bio/Align/Applications/_ClustalOmega.py -> build/lib.linux-aarch64-2.7/Bio/Align/Applications
copying Bio/Align/Applications/_TCoffee.py -> build/lib.linux-aarch64-2.7/Bio/Align/Applications
copying Bio/Align/Applications/_MSAProbs.py -> build/lib.linux-aarch64-2.7/Bio/Align/Applications
copying Bio/Align/Applications/_Muscle.py -> build/lib.linux-aarch64-2.7/Bio/Align/Applications
copying Bio/Align/Applications/_Mafft.py -> build/lib.linux-aarch64-2.7/Bio/Align/Applications
creating build/lib.linux-aarch64-2.7/Bio/AlignIO
copying Bio/AlignIO/FastaIO.py -> build/lib.linux-aarch64-2.7/Bio/AlignIO
copying Bio/AlignIO/MauveIO.py -> build/lib.linux-aarch64-2.7/Bio/AlignIO
copying Bio/AlignIO/__init__.py -> build/lib.linux-aarch64-2.7/Bio/AlignIO
copying Bio/AlignIO/StockholmIO.py -> build/lib.linux-aarch64-2.7/Bio/AlignIO
copying Bio/AlignIO/PhylipIO.py -> build/lib.linux-aarch64-2.7/Bio/AlignIO
copying Bio/AlignIO/MafIO.py -> build/lib.linux-aarch64-2.7/Bio/AlignIO
copying Bio/AlignIO/EmbossIO.py -> build/lib.linux-aarch64-2.7/Bio/AlignIO
copying Bio/AlignIO/NexusIO.py -> build/lib.linux-aarch64-2.7/Bio/AlignIO
copying Bio/AlignIO/Interfaces.py -> build/lib.linux-aarch64-2.7/Bio/AlignIO
copying Bio/AlignIO/ClustalIO.py -> build/lib.linux-aarch64-2.7/Bio/AlignIO
creating build/lib.linux-aarch64-2.7/Bio/Alphabet
copying Bio/Alphabet/__init__.py -> build/lib.linux-aarch64-2.7/Bio/Alphabet
copying Bio/Alphabet/IUPAC.py -> build/lib.linux-aarch64-2.7/Bio/Alphabet
copying Bio/Alphabet/Reduced.py -> build/lib.linux-aarch64-2.7/Bio/Alphabet
creating build/lib.linux-aarch64-2.7/Bio/Application
copying Bio/Application/__init__.py -> build/lib.linux-aarch64-2.7/Bio/Application
creating build/lib.linux-aarch64-2.7/Bio/Blast
copying Bio/Blast/Applications.py -> build/lib.linux-aarch64-2.7/Bio/Blast
copying Bio/Blast/NCBIWWW.py -> build/lib.linux-aarch64-2.7/Bio/Blast
copying Bio/Blast/__init__.py -> build/lib.linux-aarch64-2.7/Bio/Blast
copying Bio/Blast/NCBIXML.py -> build/lib.linux-aarch64-2.7/Bio/Blast
copying Bio/Blast/Record.py -> build/lib.linux-aarch64-2.7/Bio/Blast
copying Bio/Blast/NCBIStandalone.py -> build/lib.linux-aarch64-2.7/Bio/Blast
copying Bio/Blast/ParseBlastTable.py -> build/lib.linux-aarch64-2.7/Bio/Blast
creating build/lib.linux-aarch64-2.7/Bio/CAPS
copying Bio/CAPS/__init__.py -> build/lib.linux-aarch64-2.7/Bio/CAPS
creating build/lib.linux-aarch64-2.7/Bio/codonalign
copying Bio/codonalign/codonseq.py -> build/lib.linux-aarch64-2.7/Bio/codonalign
copying Bio/codonalign/__init__.py -> build/lib.linux-aarch64-2.7/Bio/codonalign
copying Bio/codonalign/codonalignment.py -> build/lib.linux-aarch64-2.7/Bio/codonalign
copying Bio/codonalign/codonalphabet.py -> build/lib.linux-aarch64-2.7/Bio/codonalign
copying Bio/codonalign/chisq.py -> build/lib.linux-aarch64-2.7/Bio/codonalign
creating build/lib.linux-aarch64-2.7/Bio/Compass
copying Bio/Compass/__init__.py -> build/lib.linux-aarch64-2.7/Bio/Compass
creating build/lib.linux-aarch64-2.7/Bio/Crystal
copying Bio/Crystal/__init__.py -> build/lib.linux-aarch64-2.7/Bio/Crystal
creating build/lib.linux-aarch64-2.7/Bio/Data
copying Bio/Data/IUPACData.py -> build/lib.linux-aarch64-2.7/Bio/Data
copying Bio/Data/__init__.py -> build/lib.linux-aarch64-2.7/Bio/Data
copying Bio/Data/SCOPData.py -> build/lib.linux-aarch64-2.7/Bio/Data
copying Bio/Data/CodonTable.py -> build/lib.linux-aarch64-2.7/Bio/Data
creating build/lib.linux-aarch64-2.7/Bio/Emboss
copying Bio/Emboss/Applications.py -> build/lib.linux-aarch64-2.7/Bio/Emboss
copying Bio/Emboss/__init__.py -> build/lib.linux-aarch64-2.7/Bio/Emboss
copying Bio/Emboss/PrimerSearch.py -> build/lib.linux-aarch64-2.7/Bio/Emboss
copying Bio/Emboss/Primer3.py -> build/lib.linux-aarch64-2.7/Bio/Emboss
creating build/lib.linux-aarch64-2.7/Bio/Entrez
copying Bio/Entrez/Parser.py -> build/lib.linux-aarch64-2.7/Bio/Entrez
copying Bio/Entrez/__init__.py -> build/lib.linux-aarch64-2.7/Bio/Entrez
creating build/lib.linux-aarch64-2.7/Bio/ExPASy
copying Bio/ExPASy/cellosaurus.py -> build/lib.linux-aarch64-2.7/Bio/ExPASy
copying Bio/ExPASy/Prosite.py -> build/lib.linux-aarch64-2.7/Bio/ExPASy
copying Bio/ExPASy/__init__.py -> build/lib.linux-aarch64-2.7/Bio/ExPASy
copying Bio/ExPASy/Prodoc.py -> build/lib.linux-aarch64-2.7/Bio/ExPASy
copying Bio/ExPASy/Enzyme.py -> build/lib.linux-aarch64-2.7/Bio/ExPASy
copying Bio/ExPASy/ScanProsite.py -> build/lib.linux-aarch64-2.7/Bio/ExPASy
creating build/lib.linux-aarch64-2.7/Bio/FSSP
copying Bio/FSSP/__init__.py -> build/lib.linux-aarch64-2.7/Bio/FSSP
copying Bio/FSSP/FSSPTools.py -> build/lib.linux-aarch64-2.7/Bio/FSSP
copying Bio/FSSP/fssp_rec.py -> build/lib.linux-aarch64-2.7/Bio/FSSP
creating build/lib.linux-aarch64-2.7/Bio/GA
copying Bio/GA/__init__.py -> build/lib.linux-aarch64-2.7/Bio/GA
copying Bio/GA/Organism.py -> build/lib.linux-aarch64-2.7/Bio/GA
copying Bio/GA/Evolver.py -> build/lib.linux-aarch64-2.7/Bio/GA
creating build/lib.linux-aarch64-2.7/Bio/GA/Crossover
copying Bio/GA/Crossover/Uniform.py -> build/lib.linux-aarch64-2.7/Bio/GA/Crossover
copying Bio/GA/Crossover/General.py -> build/lib.linux-aarch64-2.7/Bio/GA/Crossover
copying Bio/GA/Crossover/__init__.py -> build/lib.linux-aarch64-2.7/Bio/GA/Crossover
copying Bio/GA/Crossover/GeneralPoint.py -> build/lib.linux-aarch64-2.7/Bio/GA/Crossover
copying Bio/GA/Crossover/Point.py -> build/lib.linux-aarch64-2.7/Bio/GA/Crossover
copying Bio/GA/Crossover/TwoPoint.py -> build/lib.linux-aarch64-2.7/Bio/GA/Crossover
creating build/lib.linux-aarch64-2.7/Bio/GA/Mutation
copying Bio/GA/Mutation/General.py -> build/lib.linux-aarch64-2.7/Bio/GA/Mutation
copying Bio/GA/Mutation/Simple.py -> build/lib.linux-aarch64-2.7/Bio/GA/Mutation
copying Bio/GA/Mutation/__init__.py -> build/lib.linux-aarch64-2.7/Bio/GA/Mutation
creating build/lib.linux-aarch64-2.7/Bio/GA/Repair
copying Bio/GA/Repair/__init__.py -> build/lib.linux-aarch64-2.7/Bio/GA/Repair
copying Bio/GA/Repair/Stabilizing.py -> build/lib.linux-aarch64-2.7/Bio/GA/Repair
creating build/lib.linux-aarch64-2.7/Bio/GA/Selection
copying Bio/GA/Selection/Diversity.py -> build/lib.linux-aarch64-2.7/Bio/GA/Selection
copying Bio/GA/Selection/__init__.py -> build/lib.linux-aarch64-2.7/Bio/GA/Selection
copying Bio/GA/Selection/RouletteWheel.py -> build/lib.linux-aarch64-2.7/Bio/GA/Selection
copying Bio/GA/Selection/Tournament.py -> build/lib.linux-aarch64-2.7/Bio/GA/Selection
copying Bio/GA/Selection/Abstract.py -> build/lib.linux-aarch64-2.7/Bio/GA/Selection
creating build/lib.linux-aarch64-2.7/Bio/GenBank
copying Bio/GenBank/__init__.py -> build/lib.linux-aarch64-2.7/Bio/GenBank
copying Bio/GenBank/utils.py -> build/lib.linux-aarch64-2.7/Bio/GenBank
copying Bio/GenBank/Record.py -> build/lib.linux-aarch64-2.7/Bio/GenBank
copying Bio/GenBank/Scanner.py -> build/lib.linux-aarch64-2.7/Bio/GenBank
creating build/lib.linux-aarch64-2.7/Bio/Geo
copying Bio/Geo/__init__.py -> build/lib.linux-aarch64-2.7/Bio/Geo
copying Bio/Geo/Record.py -> build/lib.linux-aarch64-2.7/Bio/Geo
creating build/lib.linux-aarch64-2.7/Bio/Graphics
copying Bio/Graphics/ColorSpiral.py -> build/lib.linux-aarch64-2.7/Bio/Graphics
copying Bio/Graphics/BasicChromosome.py -> build/lib.linux-aarch64-2.7/Bio/Graphics
copying Bio/Graphics/__init__.py -> build/lib.linux-aarch64-2.7/Bio/Graphics
copying Bio/Graphics/KGML_vis.py -> build/lib.linux-aarch64-2.7/Bio/Graphics
copying Bio/Graphics/Comparative.py -> build/lib.linux-aarch64-2.7/Bio/Graphics
copying Bio/Graphics/Distribution.py -> build/lib.linux-aarch64-2.7/Bio/Graphics
copying Bio/Graphics/DisplayRepresentation.py -> build/lib.linux-aarch64-2.7/Bio/Graphics
creating build/lib.linux-aarch64-2.7/Bio/Graphics/GenomeDiagram
copying Bio/Graphics/GenomeDiagram/_Diagram.py -> build/lib.linux-aarch64-2.7/Bio/Graphics/GenomeDiagram
copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/lib.linux-aarch64-2.7/Bio/Graphics/GenomeDiagram
copying Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/lib.linux-aarch64-2.7/Bio/Graphics/GenomeDiagram
copying Bio/Graphics/GenomeDiagram/_Colors.py -> build/lib.linux-aarch64-2.7/Bio/Graphics/GenomeDiagram
copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/lib.linux-aarch64-2.7/Bio/Graphics/GenomeDiagram
copying Bio/Graphics/GenomeDiagram/_Track.py -> build/lib.linux-aarch64-2.7/Bio/Graphics/GenomeDiagram
copying Bio/Graphics/GenomeDiagram/_Feature.py -> build/lib.linux-aarch64-2.7/Bio/Graphics/GenomeDiagram
copying Bio/Graphics/GenomeDiagram/__init__.py -> build/lib.linux-aarch64-2.7/Bio/Graphics/GenomeDiagram
copying Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/lib.linux-aarch64-2.7/Bio/Graphics/GenomeDiagram
copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/lib.linux-aarch64-2.7/Bio/Graphics/GenomeDiagram
copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/lib.linux-aarch64-2.7/Bio/Graphics/GenomeDiagram
copying Bio/Graphics/GenomeDiagram/_Graph.py -> build/lib.linux-aarch64-2.7/Bio/Graphics/GenomeDiagram
creating build/lib.linux-aarch64-2.7/Bio/HMM
copying Bio/HMM/Trainer.py -> build/lib.linux-aarch64-2.7/Bio/HMM
copying Bio/HMM/__init__.py -> build/lib.linux-aarch64-2.7/Bio/HMM
copying Bio/HMM/Utilities.py -> build/lib.linux-aarch64-2.7/Bio/HMM
copying Bio/HMM/MarkovModel.py -> build/lib.linux-aarch64-2.7/Bio/HMM
copying Bio/HMM/DynamicProgramming.py -> build/lib.linux-aarch64-2.7/Bio/HMM
creating build/lib.linux-aarch64-2.7/Bio/KEGG
copying Bio/KEGG/REST.py -> build/lib.linux-aarch64-2.7/Bio/KEGG
copying Bio/KEGG/__init__.py -> build/lib.linux-aarch64-2.7/Bio/KEGG
creating build/lib.linux-aarch64-2.7/Bio/KEGG/Compound
copying Bio/KEGG/Compound/__init__.py -> build/lib.linux-aarch64-2.7/Bio/KEGG/Compound
creating build/lib.linux-aarch64-2.7/Bio/KEGG/Enzyme
copying Bio/KEGG/Enzyme/__init__.py -> build/lib.linux-aarch64-2.7/Bio/KEGG/Enzyme
creating build/lib.linux-aarch64-2.7/Bio/KEGG/Map
copying Bio/KEGG/Map/__init__.py -> build/lib.linux-aarch64-2.7/Bio/KEGG/Map
creating build/lib.linux-aarch64-2.7/Bio/PDB
creating build/lib.linux-aarch64-2.7/Bio/PDB/mmtf
copying Bio/PDB/mmtf/DefaultParser.py -> build/lib.linux-aarch64-2.7/Bio/PDB/mmtf
copying Bio/PDB/mmtf/__init__.py -> build/lib.linux-aarch64-2.7/Bio/PDB/mmtf
creating build/lib.linux-aarch64-2.7/Bio/KEGG/KGML
copying Bio/KEGG/KGML/__init__.py -> build/lib.linux-aarch64-2.7/Bio/KEGG/KGML
copying Bio/KEGG/KGML/KGML_parser.py -> build/lib.linux-aarch64-2.7/Bio/KEGG/KGML
copying Bio/KEGG/KGML/KGML_pathway.py -> build/lib.linux-aarch64-2.7/Bio/KEGG/KGML
creating build/lib.linux-aarch64-2.7/Bio/Medline
copying Bio/Medline/__init__.py -> build/lib.linux-aarch64-2.7/Bio/Medline
creating build/lib.linux-aarch64-2.7/Bio/motifs
copying Bio/motifs/thresholds.py -> build/lib.linux-aarch64-2.7/Bio/motifs
copying Bio/motifs/matrix.py -> build/lib.linux-aarch64-2.7/Bio/motifs
copying Bio/motifs/__init__.py -> build/lib.linux-aarch64-2.7/Bio/motifs
copying Bio/motifs/meme.py -> build/lib.linux-aarch64-2.7/Bio/motifs
copying Bio/motifs/transfac.py -> build/lib.linux-aarch64-2.7/Bio/motifs
copying Bio/motifs/alignace.py -> build/lib.linux-aarch64-2.7/Bio/motifs
copying Bio/motifs/mast.py -> build/lib.linux-aarch64-2.7/Bio/motifs
creating build/lib.linux-aarch64-2.7/Bio/motifs/applications
copying Bio/motifs/applications/__init__.py -> build/lib.linux-aarch64-2.7/Bio/motifs/applications
copying Bio/motifs/applications/_xxmotif.py -> build/lib.linux-aarch64-2.7/Bio/motifs/applications
creating build/lib.linux-aarch64-2.7/Bio/motifs/jaspar
copying Bio/motifs/jaspar/__init__.py -> build/lib.linux-aarch64-2.7/Bio/motifs/jaspar
copying Bio/motifs/jaspar/db.py -> build/lib.linux-aarch64-2.7/Bio/motifs/jaspar
creating build/lib.linux-aarch64-2.7/Bio/NeuralNetwork
copying Bio/NeuralNetwork/StopTraining.py -> build/lib.linux-aarch64-2.7/Bio/NeuralNetwork
copying Bio/NeuralNetwork/Training.py -> build/lib.linux-aarch64-2.7/Bio/NeuralNetwork
copying Bio/NeuralNetwork/__init__.py -> build/lib.linux-aarch64-2.7/Bio/NeuralNetwork
creating build/lib.linux-aarch64-2.7/Bio/NeuralNetwork/BackPropagation
copying Bio/NeuralNetwork/BackPropagation/Layer.py -> build/lib.linux-aarch64-2.7/Bio/NeuralNetwork/BackPropagation
copying Bio/NeuralNetwork/BackPropagation/__init__.py -> build/lib.linux-aarch64-2.7/Bio/NeuralNetwork/BackPropagation
copying Bio/NeuralNetwork/BackPropagation/Network.py -> build/lib.linux-aarch64-2.7/Bio/NeuralNetwork/BackPropagation
creating build/lib.linux-aarch64-2.7/Bio/NeuralNetwork/Gene
copying Bio/NeuralNetwork/Gene/Pattern.py -> build/lib.linux-aarch64-2.7/Bio/NeuralNetwork/Gene
copying Bio/NeuralNetwork/Gene/__init__.py -> build/lib.linux-aarch64-2.7/Bio/NeuralNetwork/Gene
copying Bio/NeuralNetwork/Gene/Schema.py -> build/lib.linux-aarch64-2.7/Bio/NeuralNetwork/Gene
copying Bio/NeuralNetwork/Gene/Signature.py -> build/lib.linux-aarch64-2.7/Bio/NeuralNetwork/Gene
copying Bio/NeuralNetwork/Gene/Motif.py -> build/lib.linux-aarch64-2.7/Bio/NeuralNetwork/Gene
creating build/lib.linux-aarch64-2.7/Bio/Nexus
copying Bio/Nexus/Nodes.py -> build/lib.linux-aarch64-2.7/Bio/Nexus
copying Bio/Nexus/Trees.py -> build/lib.linux-aarch64-2.7/Bio/Nexus
copying Bio/Nexus/StandardData.py -> build/lib.linux-aarch64-2.7/Bio/Nexus
copying Bio/Nexus/__init__.py -> build/lib.linux-aarch64-2.7/Bio/Nexus
copying Bio/Nexus/Nexus.py -> build/lib.linux-aarch64-2.7/Bio/Nexus
creating build/lib.linux-aarch64-2.7/Bio/NMR
copying Bio/NMR/__init__.py -> build/lib.linux-aarch64-2.7/Bio/NMR
copying Bio/NMR/NOEtools.py -> build/lib.linux-aarch64-2.7/Bio/NMR
copying Bio/NMR/xpktools.py -> build/lib.linux-aarch64-2.7/Bio/NMR
creating build/lib.linux-aarch64-2.7/Bio/Pathway
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copying Bio/Pathway/Rep/MultiGraph.py -> build/lib.linux-aarch64-2.7/Bio/Pathway/Rep
copying Bio/PDB/HSExposure.py -> build/lib.linux-aarch64-2.7/Bio/PDB
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copying Bio/PDB/PDBExceptions.py -> build/lib.linux-aarch64-2.7/Bio/PDB
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copying Bio/PDB/Superimposer.py -> build/lib.linux-aarch64-2.7/Bio/PDB
copying Bio/PDB/DSSP.py -> build/lib.linux-aarch64-2.7/Bio/PDB
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copying Bio/PDB/FragmentMapper.py -> build/lib.linux-aarch64-2.7/Bio/PDB
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copying Bio/PDB/NeighborSearch.py -> build/lib.linux-aarch64-2.7/Bio/PDB
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copying Bio/PDB/parse_pdb_header.py -> build/lib.linux-aarch64-2.7/Bio/PDB
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creating build/lib.linux-aarch64-2.7/Bio/PopGen
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creating build/lib.linux-aarch64-2.7/Bio/PopGen/GenePop
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copying Bio/PopGen/GenePop/EasyController.py -> build/lib.linux-aarch64-2.7/Bio/PopGen/GenePop
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copying Bio/PopGen/GenePop/__init__.py -> build/lib.linux-aarch64-2.7/Bio/PopGen/GenePop
copying Bio/PopGen/GenePop/LargeFileParser.py -> build/lib.linux-aarch64-2.7/Bio/PopGen/GenePop
copying Bio/PopGen/GenePop/FileParser.py -> build/lib.linux-aarch64-2.7/Bio/PopGen/GenePop
creating build/lib.linux-aarch64-2.7/Bio/Restriction
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copying Bio/Restriction/PrintFormat.py -> build/lib.linux-aarch64-2.7/Bio/Restriction
copying Bio/Restriction/Restriction.py -> build/lib.linux-aarch64-2.7/Bio/Restriction
creating build/lib.linux-aarch64-2.7/Bio/SCOP
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copying Bio/SearchIO/BlastIO/blast_xml.py -> build/lib.linux-aarch64-2.7/Bio/SearchIO/BlastIO
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creating build/lib.linux-aarch64-2.7/Bio/SearchIO/HmmerIO
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copying Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/lib.linux-aarch64-2.7/Bio/SearchIO/HmmerIO
copying Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/lib.linux-aarch64-2.7/Bio/SearchIO/HmmerIO
copying Bio/SearchIO/HmmerIO/_base.py -> build/lib.linux-aarch64-2.7/Bio/SearchIO/HmmerIO
copying Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/lib.linux-aarch64-2.7/Bio/SearchIO/HmmerIO
creating build/lib.linux-aarch64-2.7/Bio/SearchIO/ExonerateIO
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copying Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/lib.linux-aarch64-2.7/Bio/SearchIO/ExonerateIO
copying Bio/SearchIO/ExonerateIO/_base.py -> build/lib.linux-aarch64-2.7/Bio/SearchIO/ExonerateIO
creating build/lib.linux-aarch64-2.7/Bio/SeqIO
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copying Bio/SeqIO/UniprotIO.py -> build/lib.linux-aarch64-2.7/Bio/SeqIO
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copying Bio/SeqIO/QualityIO.py -> build/lib.linux-aarch64-2.7/Bio/SeqIO
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copying Bio/SeqIO/PirIO.py -> build/lib.linux-aarch64-2.7/Bio/SeqIO
creating build/lib.linux-aarch64-2.7/Bio/SeqUtils
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copying Bio/SeqUtils/ProtParam.py -> build/lib.linux-aarch64-2.7/Bio/SeqUtils
copying Bio/SeqUtils/CodonUsageIndices.py -> build/lib.linux-aarch64-2.7/Bio/SeqUtils
copying Bio/SeqUtils/__init__.py -> build/lib.linux-aarch64-2.7/Bio/SeqUtils
copying Bio/SeqUtils/lcc.py -> build/lib.linux-aarch64-2.7/Bio/SeqUtils
copying Bio/SeqUtils/CodonUsage.py -> build/lib.linux-aarch64-2.7/Bio/SeqUtils
copying Bio/SeqUtils/CheckSum.py -> build/lib.linux-aarch64-2.7/Bio/SeqUtils
copying Bio/SeqUtils/IsoelectricPoint.py -> build/lib.linux-aarch64-2.7/Bio/SeqUtils
copying Bio/SeqUtils/MeltingTemp.py -> build/lib.linux-aarch64-2.7/Bio/SeqUtils
creating build/lib.linux-aarch64-2.7/Bio/Sequencing
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copying Bio/Sequencing/Phd.py -> build/lib.linux-aarch64-2.7/Bio/Sequencing
creating build/lib.linux-aarch64-2.7/Bio/Sequencing/Applications
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creating build/lib.linux-aarch64-2.7/Bio/Statistics
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creating build/lib.linux-aarch64-2.7/Bio/SubsMat
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copying Bio/SubsMat/MatrixInfo.py -> build/lib.linux-aarch64-2.7/Bio/SubsMat
creating build/lib.linux-aarch64-2.7/Bio/SVDSuperimposer
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creating build/lib.linux-aarch64-2.7/Bio/PDB/QCPSuperimposer
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creating build/lib.linux-aarch64-2.7/Bio/SwissProt
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creating build/lib.linux-aarch64-2.7/Bio/TogoWS
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creating build/lib.linux-aarch64-2.7/Bio/Phylo
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copying Bio/Phylo/_cdao_owl.py -> build/lib.linux-aarch64-2.7/Bio/Phylo
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copying Bio/Entrez/DTDs/archivecustom-modules.ent -> build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/mmlextra.ent -> build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isoamsr.ent -> build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/common.ent -> build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/mmlalias.ent -> build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/chars.ent -> build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/default-classes.ent -> build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/backmatter.ent -> build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/archivecustom-classes.ent -> build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/notat.ent -> build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isoamso.ent -> build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isocyr1.ent -> build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/mathml2-qname-1.mod -> build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs
running build_ext
building 'Bio.cpairwise2' extension
creating build/temp.linux-aarch64-2.7
creating build/temp.linux-aarch64-2.7/Bio
gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z,relro -Wl,-z,now -fPIC -I/usr/include/python2.7 -c Bio/cpairwise2module.c -o build/temp.linux-aarch64-2.7/Bio/cpairwise2module.o
In file included from /usr/include/python2.7/Python.h:100:0,
                 from Bio/cpairwise2module.c:14:
Bio/cpairwise2module.c: In function 'cpairwise2__make_score_matrix_fast':
/usr/include/python2.7/listobject.h:62:58: warning: 'py_trace_row' may be used uninitialized in this function [-Wmaybe-uninitialized]
 #define PyList_SET_ITEM(op, i, v) (((PyListObject *)(op))->ob_item[i] = (v))
                                                          ^~
Bio/cpairwise2module.c:343:34: note: 'py_trace_row' was declared here
         PyObject *py_score_row, *py_trace_row;
                                  ^~~~~~~~~~~~
gcc -pthread -shared -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z,relro -Wl,-z,now build/temp.linux-aarch64-2.7/Bio/cpairwise2module.o -L/usr/lib64 -lpython2.7 -o build/lib.linux-aarch64-2.7/Bio/cpairwise2.so
building 'Bio.trie' extension
gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z,relro -Wl,-z,now -fPIC -IBio -I/usr/include/python2.7 -c Bio/triemodule.c -o build/temp.linux-aarch64-2.7/Bio/triemodule.o
gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z,relro -Wl,-z,now -fPIC -IBio -I/usr/include/python2.7 -c Bio/trie.c -o build/temp.linux-aarch64-2.7/Bio/trie.o
gcc -pthread -shared -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z,relro -Wl,-z,now build/temp.linux-aarch64-2.7/Bio/triemodule.o build/temp.linux-aarch64-2.7/Bio/trie.o -L/usr/lib64 -lpython2.7 -o build/lib.linux-aarch64-2.7/Bio/trie.so
building 'Bio.Nexus.cnexus' extension
creating build/temp.linux-aarch64-2.7/Bio/Nexus
gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z,relro -Wl,-z,now -fPIC -I/usr/include/python2.7 -c Bio/Nexus/cnexus.c -o build/temp.linux-aarch64-2.7/Bio/Nexus/cnexus.o
gcc -pthread -shared -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z,relro -Wl,-z,now build/temp.linux-aarch64-2.7/Bio/Nexus/cnexus.o -L/usr/lib64 -lpython2.7 -o build/lib.linux-aarch64-2.7/Bio/Nexus/cnexus.so
building 'Bio.Cluster.cluster' extension
creating build/temp.linux-aarch64-2.7/Bio/Cluster
gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z,relro -Wl,-z,now -fPIC -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c Bio/Cluster/clustermodule.c -o build/temp.linux-aarch64-2.7/Bio/Cluster/clustermodule.o
gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z,relro -Wl,-z,now -fPIC -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c Bio/Cluster/cluster.c -o build/temp.linux-aarch64-2.7/Bio/Cluster/cluster.o
gcc -pthread -shared -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z,relro -Wl,-z,now build/temp.linux-aarch64-2.7/Bio/Cluster/clustermodule.o build/temp.linux-aarch64-2.7/Bio/Cluster/cluster.o -L/usr/lib64 -lpython2.7 -o build/lib.linux-aarch64-2.7/Bio/Cluster/cluster.so
building 'Bio.KDTree._CKDTree' extension
creating build/temp.linux-aarch64-2.7/Bio/KDTree
gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z,relro -Wl,-z,now -fPIC -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c Bio/KDTree/KDTree.c -o build/temp.linux-aarch64-2.7/Bio/KDTree/KDTree.o
gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z,relro -Wl,-z,now -fPIC -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c Bio/KDTree/KDTreemodule.c -o build/temp.linux-aarch64-2.7/Bio/KDTree/KDTreemodule.o
gcc -pthread -shared -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z,relro -Wl,-z,now build/temp.linux-aarch64-2.7/Bio/KDTree/KDTree.o build/temp.linux-aarch64-2.7/Bio/KDTree/KDTreemodule.o -L/usr/lib64 -lpython2.7 -o build/lib.linux-aarch64-2.7/Bio/KDTree/_CKDTree.so
building 'Bio.motifs._pwm' extension
creating build/temp.linux-aarch64-2.7/Bio/motifs
gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z,relro -Wl,-z,now -fPIC -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c Bio/motifs/_pwm.c -o build/temp.linux-aarch64-2.7/Bio/motifs/_pwm.o
gcc -pthread -shared -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z,relro -Wl,-z,now build/temp.linux-aarch64-2.7/Bio/motifs/_pwm.o -L/usr/lib64 -lpython2.7 -o build/lib.linux-aarch64-2.7/Bio/motifs/_pwm.so
building 'Bio.PDB.QCPSuperimposer.qcprotmodule' extension
creating build/temp.linux-aarch64-2.7/Bio/PDB
creating build/temp.linux-aarch64-2.7/Bio/PDB/QCPSuperimposer
gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z,relro -Wl,-z,now -fPIC -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c Bio/PDB/QCPSuperimposer/qcprotmodule.c -o build/temp.linux-aarch64-2.7/Bio/PDB/QCPSuperimposer/qcprotmodule.o
In file included from /usr/include/python2.7/pyconfig.h:6:0,
                 from /usr/include/python2.7/Python.h:8,
                 from Bio/PDB/QCPSuperimposer/qcprotmodule.c:43:
/usr/include/python2.7/pyconfig-64.h:1202:0: warning: "_POSIX_C_SOURCE" redefined
 #define _POSIX_C_SOURCE 200112L
 
In file included from /usr/include/bits/libc-header-start.h:33:0,
                 from /usr/include/stdio.h:27,
                 from Bio/PDB/QCPSuperimposer/qcprotmodule.c:40:
/usr/include/features.h:260:0: note: this is the location of the previous definition
 # define _POSIX_C_SOURCE 200809L
 
In file included from /usr/include/python2.7/pyconfig.h:6:0,
                 from /usr/include/python2.7/Python.h:8,
                 from Bio/PDB/QCPSuperimposer/qcprotmodule.c:43:
/usr/include/python2.7/pyconfig-64.h:1224:0: warning: "_XOPEN_SOURCE" redefined
 #define _XOPEN_SOURCE 600
 
In file included from /usr/include/bits/libc-header-start.h:33:0,
                 from /usr/include/stdio.h:27,
                 from Bio/PDB/QCPSuperimposer/qcprotmodule.c:40:
/usr/include/features.h:201:0: note: this is the location of the previous definition
 # define _XOPEN_SOURCE 700
 
gcc -pthread -shared -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z,relro -Wl,-z,now build/temp.linux-aarch64-2.7/Bio/PDB/QCPSuperimposer/qcprotmodule.o -L/usr/lib64 -lpython2.7 -o build/lib.linux-aarch64-2.7/Bio/PDB/QCPSuperimposer/qcprotmodule.so
+ popd
~/build/BUILD/python-biopython-1.70
~/build/BUILD/python-biopython-1.70/python3 ~/build/BUILD/python-biopython-1.70
+ pushd python3
+ CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z,relro -Wl,-z,now'
+ /usr/bin/python3 setup.py build '--executable=/usr/bin/python3 -s'
running build
running build_py
creating build
creating build/lib.linux-aarch64-3.6
creating build/lib.linux-aarch64-3.6/Bio
copying Bio/triefind.py -> build/lib.linux-aarch64-3.6/Bio
copying Bio/File.py -> build/lib.linux-aarch64-3.6/Bio
copying Bio/Seq.py -> build/lib.linux-aarch64-3.6/Bio
copying Bio/_utils.py -> build/lib.linux-aarch64-3.6/Bio
copying Bio/kNN.py -> build/lib.linux-aarch64-3.6/Bio
copying Bio/SeqRecord.py -> build/lib.linux-aarch64-3.6/Bio
copying Bio/ParserSupport.py -> build/lib.linux-aarch64-3.6/Bio
copying Bio/SeqFeature.py -> build/lib.linux-aarch64-3.6/Bio
copying Bio/__init__.py -> build/lib.linux-aarch64-3.6/Bio
copying Bio/Index.py -> build/lib.linux-aarch64-3.6/Bio
copying Bio/MaxEntropy.py -> build/lib.linux-aarch64-3.6/Bio
copying Bio/pairwise2.py -> build/lib.linux-aarch64-3.6/Bio
copying Bio/bgzf.py -> build/lib.linux-aarch64-3.6/Bio
copying Bio/MarkovModel.py -> build/lib.linux-aarch64-3.6/Bio
copying Bio/NaiveBayes.py -> build/lib.linux-aarch64-3.6/Bio
copying Bio/LogisticRegression.py -> build/lib.linux-aarch64-3.6/Bio
copying Bio/DocSQL.py -> build/lib.linux-aarch64-3.6/Bio
creating build/lib.linux-aarch64-3.6/Bio/Align
copying Bio/Align/__init__.py -> build/lib.linux-aarch64-3.6/Bio/Align
copying Bio/Align/AlignInfo.py -> build/lib.linux-aarch64-3.6/Bio/Align
creating build/lib.linux-aarch64-3.6/Bio/Align/Applications
copying Bio/Align/Applications/_Prank.py -> build/lib.linux-aarch64-3.6/Bio/Align/Applications
copying Bio/Align/Applications/_Clustalw.py -> build/lib.linux-aarch64-3.6/Bio/Align/Applications
copying Bio/Align/Applications/_Probcons.py -> build/lib.linux-aarch64-3.6/Bio/Align/Applications
copying Bio/Align/Applications/_Dialign.py -> build/lib.linux-aarch64-3.6/Bio/Align/Applications
copying Bio/Align/Applications/__init__.py -> build/lib.linux-aarch64-3.6/Bio/Align/Applications
copying Bio/Align/Applications/_ClustalOmega.py -> build/lib.linux-aarch64-3.6/Bio/Align/Applications
copying Bio/Align/Applications/_TCoffee.py -> build/lib.linux-aarch64-3.6/Bio/Align/Applications
copying Bio/Align/Applications/_MSAProbs.py -> build/lib.linux-aarch64-3.6/Bio/Align/Applications
copying Bio/Align/Applications/_Muscle.py -> build/lib.linux-aarch64-3.6/Bio/Align/Applications
copying Bio/Align/Applications/_Mafft.py -> build/lib.linux-aarch64-3.6/Bio/Align/Applications
creating build/lib.linux-aarch64-3.6/Bio/AlignIO
copying Bio/AlignIO/FastaIO.py -> build/lib.linux-aarch64-3.6/Bio/AlignIO
copying Bio/AlignIO/MauveIO.py -> build/lib.linux-aarch64-3.6/Bio/AlignIO
copying Bio/AlignIO/__init__.py -> build/lib.linux-aarch64-3.6/Bio/AlignIO
copying Bio/AlignIO/StockholmIO.py -> build/lib.linux-aarch64-3.6/Bio/AlignIO
copying Bio/AlignIO/PhylipIO.py -> build/lib.linux-aarch64-3.6/Bio/AlignIO
copying Bio/AlignIO/MafIO.py -> build/lib.linux-aarch64-3.6/Bio/AlignIO
copying Bio/AlignIO/EmbossIO.py -> build/lib.linux-aarch64-3.6/Bio/AlignIO
copying Bio/AlignIO/NexusIO.py -> build/lib.linux-aarch64-3.6/Bio/AlignIO
copying Bio/AlignIO/Interfaces.py -> build/lib.linux-aarch64-3.6/Bio/AlignIO
copying Bio/AlignIO/ClustalIO.py -> build/lib.linux-aarch64-3.6/Bio/AlignIO
creating build/lib.linux-aarch64-3.6/Bio/Alphabet
copying Bio/Alphabet/__init__.py -> build/lib.linux-aarch64-3.6/Bio/Alphabet
copying Bio/Alphabet/IUPAC.py -> build/lib.linux-aarch64-3.6/Bio/Alphabet
copying Bio/Alphabet/Reduced.py -> build/lib.linux-aarch64-3.6/Bio/Alphabet
creating build/lib.linux-aarch64-3.6/Bio/Application
copying Bio/Application/__init__.py -> build/lib.linux-aarch64-3.6/Bio/Application
creating build/lib.linux-aarch64-3.6/Bio/Blast
copying Bio/Blast/Applications.py -> build/lib.linux-aarch64-3.6/Bio/Blast
copying Bio/Blast/NCBIWWW.py -> build/lib.linux-aarch64-3.6/Bio/Blast
copying Bio/Blast/__init__.py -> build/lib.linux-aarch64-3.6/Bio/Blast
copying Bio/Blast/NCBIXML.py -> build/lib.linux-aarch64-3.6/Bio/Blast
copying Bio/Blast/Record.py -> build/lib.linux-aarch64-3.6/Bio/Blast
copying Bio/Blast/NCBIStandalone.py -> build/lib.linux-aarch64-3.6/Bio/Blast
copying Bio/Blast/ParseBlastTable.py -> build/lib.linux-aarch64-3.6/Bio/Blast
creating build/lib.linux-aarch64-3.6/Bio/CAPS
copying Bio/CAPS/__init__.py -> build/lib.linux-aarch64-3.6/Bio/CAPS
creating build/lib.linux-aarch64-3.6/Bio/codonalign
copying Bio/codonalign/codonseq.py -> build/lib.linux-aarch64-3.6/Bio/codonalign
copying Bio/codonalign/__init__.py -> build/lib.linux-aarch64-3.6/Bio/codonalign
copying Bio/codonalign/codonalignment.py -> build/lib.linux-aarch64-3.6/Bio/codonalign
copying Bio/codonalign/codonalphabet.py -> build/lib.linux-aarch64-3.6/Bio/codonalign
copying Bio/codonalign/chisq.py -> build/lib.linux-aarch64-3.6/Bio/codonalign
creating build/lib.linux-aarch64-3.6/Bio/Compass
copying Bio/Compass/__init__.py -> build/lib.linux-aarch64-3.6/Bio/Compass
creating build/lib.linux-aarch64-3.6/Bio/Crystal
copying Bio/Crystal/__init__.py -> build/lib.linux-aarch64-3.6/Bio/Crystal
creating build/lib.linux-aarch64-3.6/Bio/Data
copying Bio/Data/IUPACData.py -> build/lib.linux-aarch64-3.6/Bio/Data
copying Bio/Data/__init__.py -> build/lib.linux-aarch64-3.6/Bio/Data
copying Bio/Data/SCOPData.py -> build/lib.linux-aarch64-3.6/Bio/Data
copying Bio/Data/CodonTable.py -> build/lib.linux-aarch64-3.6/Bio/Data
creating build/lib.linux-aarch64-3.6/Bio/Emboss
copying Bio/Emboss/Applications.py -> build/lib.linux-aarch64-3.6/Bio/Emboss
copying Bio/Emboss/__init__.py -> build/lib.linux-aarch64-3.6/Bio/Emboss
copying Bio/Emboss/PrimerSearch.py -> build/lib.linux-aarch64-3.6/Bio/Emboss
copying Bio/Emboss/Primer3.py -> build/lib.linux-aarch64-3.6/Bio/Emboss
creating build/lib.linux-aarch64-3.6/Bio/Entrez
copying Bio/Entrez/Parser.py -> build/lib.linux-aarch64-3.6/Bio/Entrez
copying Bio/Entrez/__init__.py -> build/lib.linux-aarch64-3.6/Bio/Entrez
creating build/lib.linux-aarch64-3.6/Bio/ExPASy
copying Bio/ExPASy/cellosaurus.py -> build/lib.linux-aarch64-3.6/Bio/ExPASy
copying Bio/ExPASy/Prosite.py -> build/lib.linux-aarch64-3.6/Bio/ExPASy
copying Bio/ExPASy/__init__.py -> build/lib.linux-aarch64-3.6/Bio/ExPASy
copying Bio/ExPASy/Prodoc.py -> build/lib.linux-aarch64-3.6/Bio/ExPASy
copying Bio/ExPASy/Enzyme.py -> build/lib.linux-aarch64-3.6/Bio/ExPASy
copying Bio/ExPASy/ScanProsite.py -> build/lib.linux-aarch64-3.6/Bio/ExPASy
creating build/lib.linux-aarch64-3.6/Bio/FSSP
copying Bio/FSSP/__init__.py -> build/lib.linux-aarch64-3.6/Bio/FSSP
copying Bio/FSSP/FSSPTools.py -> build/lib.linux-aarch64-3.6/Bio/FSSP
copying Bio/FSSP/fssp_rec.py -> build/lib.linux-aarch64-3.6/Bio/FSSP
creating build/lib.linux-aarch64-3.6/Bio/GA
copying Bio/GA/__init__.py -> build/lib.linux-aarch64-3.6/Bio/GA
copying Bio/GA/Organism.py -> build/lib.linux-aarch64-3.6/Bio/GA
copying Bio/GA/Evolver.py -> build/lib.linux-aarch64-3.6/Bio/GA
creating build/lib.linux-aarch64-3.6/Bio/GA/Crossover
copying Bio/GA/Crossover/Uniform.py -> build/lib.linux-aarch64-3.6/Bio/GA/Crossover
copying Bio/GA/Crossover/General.py -> build/lib.linux-aarch64-3.6/Bio/GA/Crossover
copying Bio/GA/Crossover/__init__.py -> build/lib.linux-aarch64-3.6/Bio/GA/Crossover
copying Bio/GA/Crossover/GeneralPoint.py -> build/lib.linux-aarch64-3.6/Bio/GA/Crossover
copying Bio/GA/Crossover/Point.py -> build/lib.linux-aarch64-3.6/Bio/GA/Crossover
copying Bio/GA/Crossover/TwoPoint.py -> build/lib.linux-aarch64-3.6/Bio/GA/Crossover
creating build/lib.linux-aarch64-3.6/Bio/GA/Mutation
copying Bio/GA/Mutation/General.py -> build/lib.linux-aarch64-3.6/Bio/GA/Mutation
copying Bio/GA/Mutation/Simple.py -> build/lib.linux-aarch64-3.6/Bio/GA/Mutation
copying Bio/GA/Mutation/__init__.py -> build/lib.linux-aarch64-3.6/Bio/GA/Mutation
creating build/lib.linux-aarch64-3.6/Bio/GA/Repair
copying Bio/GA/Repair/__init__.py -> build/lib.linux-aarch64-3.6/Bio/GA/Repair
copying Bio/GA/Repair/Stabilizing.py -> build/lib.linux-aarch64-3.6/Bio/GA/Repair
creating build/lib.linux-aarch64-3.6/Bio/GA/Selection
copying Bio/GA/Selection/Diversity.py -> build/lib.linux-aarch64-3.6/Bio/GA/Selection
copying Bio/GA/Selection/__init__.py -> build/lib.linux-aarch64-3.6/Bio/GA/Selection
copying Bio/GA/Selection/RouletteWheel.py -> build/lib.linux-aarch64-3.6/Bio/GA/Selection
copying Bio/GA/Selection/Tournament.py -> build/lib.linux-aarch64-3.6/Bio/GA/Selection
copying Bio/GA/Selection/Abstract.py -> build/lib.linux-aarch64-3.6/Bio/GA/Selection
creating build/lib.linux-aarch64-3.6/Bio/GenBank
copying Bio/GenBank/__init__.py -> build/lib.linux-aarch64-3.6/Bio/GenBank
copying Bio/GenBank/utils.py -> build/lib.linux-aarch64-3.6/Bio/GenBank
copying Bio/GenBank/Record.py -> build/lib.linux-aarch64-3.6/Bio/GenBank
copying Bio/GenBank/Scanner.py -> build/lib.linux-aarch64-3.6/Bio/GenBank
creating build/lib.linux-aarch64-3.6/Bio/Geo
copying Bio/Geo/__init__.py -> build/lib.linux-aarch64-3.6/Bio/Geo
copying Bio/Geo/Record.py -> build/lib.linux-aarch64-3.6/Bio/Geo
creating build/lib.linux-aarch64-3.6/Bio/Graphics
copying Bio/Graphics/ColorSpiral.py -> build/lib.linux-aarch64-3.6/Bio/Graphics
copying Bio/Graphics/BasicChromosome.py -> build/lib.linux-aarch64-3.6/Bio/Graphics
copying Bio/Graphics/__init__.py -> build/lib.linux-aarch64-3.6/Bio/Graphics
copying Bio/Graphics/KGML_vis.py -> build/lib.linux-aarch64-3.6/Bio/Graphics
copying Bio/Graphics/Comparative.py -> build/lib.linux-aarch64-3.6/Bio/Graphics
copying Bio/Graphics/Distribution.py -> build/lib.linux-aarch64-3.6/Bio/Graphics
copying Bio/Graphics/DisplayRepresentation.py -> build/lib.linux-aarch64-3.6/Bio/Graphics
creating build/lib.linux-aarch64-3.6/Bio/Graphics/GenomeDiagram
copying Bio/Graphics/GenomeDiagram/_Diagram.py -> build/lib.linux-aarch64-3.6/Bio/Graphics/GenomeDiagram
copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/lib.linux-aarch64-3.6/Bio/Graphics/GenomeDiagram
copying Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/lib.linux-aarch64-3.6/Bio/Graphics/GenomeDiagram
copying Bio/Graphics/GenomeDiagram/_Colors.py -> build/lib.linux-aarch64-3.6/Bio/Graphics/GenomeDiagram
copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/lib.linux-aarch64-3.6/Bio/Graphics/GenomeDiagram
copying Bio/Graphics/GenomeDiagram/_Track.py -> build/lib.linux-aarch64-3.6/Bio/Graphics/GenomeDiagram
copying Bio/Graphics/GenomeDiagram/_Feature.py -> build/lib.linux-aarch64-3.6/Bio/Graphics/GenomeDiagram
copying Bio/Graphics/GenomeDiagram/__init__.py -> build/lib.linux-aarch64-3.6/Bio/Graphics/GenomeDiagram
copying Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/lib.linux-aarch64-3.6/Bio/Graphics/GenomeDiagram
copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/lib.linux-aarch64-3.6/Bio/Graphics/GenomeDiagram
copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/lib.linux-aarch64-3.6/Bio/Graphics/GenomeDiagram
copying Bio/Graphics/GenomeDiagram/_Graph.py -> build/lib.linux-aarch64-3.6/Bio/Graphics/GenomeDiagram
creating build/lib.linux-aarch64-3.6/Bio/HMM
copying Bio/HMM/Trainer.py -> build/lib.linux-aarch64-3.6/Bio/HMM
copying Bio/HMM/__init__.py -> build/lib.linux-aarch64-3.6/Bio/HMM
copying Bio/HMM/Utilities.py -> build/lib.linux-aarch64-3.6/Bio/HMM
copying Bio/HMM/MarkovModel.py -> build/lib.linux-aarch64-3.6/Bio/HMM
copying Bio/HMM/DynamicProgramming.py -> build/lib.linux-aarch64-3.6/Bio/HMM
creating build/lib.linux-aarch64-3.6/Bio/KEGG
copying Bio/KEGG/REST.py -> build/lib.linux-aarch64-3.6/Bio/KEGG
copying Bio/KEGG/__init__.py -> build/lib.linux-aarch64-3.6/Bio/KEGG
creating build/lib.linux-aarch64-3.6/Bio/KEGG/Compound
copying Bio/KEGG/Compound/__init__.py -> build/lib.linux-aarch64-3.6/Bio/KEGG/Compound
creating build/lib.linux-aarch64-3.6/Bio/KEGG/Enzyme
copying Bio/KEGG/Enzyme/__init__.py -> build/lib.linux-aarch64-3.6/Bio/KEGG/Enzyme
creating build/lib.linux-aarch64-3.6/Bio/KEGG/Map
copying Bio/KEGG/Map/__init__.py -> build/lib.linux-aarch64-3.6/Bio/KEGG/Map
creating build/lib.linux-aarch64-3.6/Bio/PDB
creating build/lib.linux-aarch64-3.6/Bio/PDB/mmtf
copying Bio/PDB/mmtf/DefaultParser.py -> build/lib.linux-aarch64-3.6/Bio/PDB/mmtf
copying Bio/PDB/mmtf/__init__.py -> build/lib.linux-aarch64-3.6/Bio/PDB/mmtf
creating build/lib.linux-aarch64-3.6/Bio/KEGG/KGML
copying Bio/KEGG/KGML/__init__.py -> build/lib.linux-aarch64-3.6/Bio/KEGG/KGML
copying Bio/KEGG/KGML/KGML_parser.py -> build/lib.linux-aarch64-3.6/Bio/KEGG/KGML
copying Bio/KEGG/KGML/KGML_pathway.py -> build/lib.linux-aarch64-3.6/Bio/KEGG/KGML
creating build/lib.linux-aarch64-3.6/Bio/Medline
copying Bio/Medline/__init__.py -> build/lib.linux-aarch64-3.6/Bio/Medline
creating build/lib.linux-aarch64-3.6/Bio/motifs
copying Bio/motifs/thresholds.py -> build/lib.linux-aarch64-3.6/Bio/motifs
copying Bio/motifs/matrix.py -> build/lib.linux-aarch64-3.6/Bio/motifs
copying Bio/motifs/__init__.py -> build/lib.linux-aarch64-3.6/Bio/motifs
copying Bio/motifs/meme.py -> build/lib.linux-aarch64-3.6/Bio/motifs
copying Bio/motifs/transfac.py -> build/lib.linux-aarch64-3.6/Bio/motifs
copying Bio/motifs/alignace.py -> build/lib.linux-aarch64-3.6/Bio/motifs
copying Bio/motifs/mast.py -> build/lib.linux-aarch64-3.6/Bio/motifs
creating build/lib.linux-aarch64-3.6/Bio/motifs/applications
copying Bio/motifs/applications/__init__.py -> build/lib.linux-aarch64-3.6/Bio/motifs/applications
copying Bio/motifs/applications/_xxmotif.py -> build/lib.linux-aarch64-3.6/Bio/motifs/applications
creating build/lib.linux-aarch64-3.6/Bio/motifs/jaspar
copying Bio/motifs/jaspar/__init__.py -> build/lib.linux-aarch64-3.6/Bio/motifs/jaspar
copying Bio/motifs/jaspar/db.py -> build/lib.linux-aarch64-3.6/Bio/motifs/jaspar
creating build/lib.linux-aarch64-3.6/Bio/NeuralNetwork
copying Bio/NeuralNetwork/StopTraining.py -> build/lib.linux-aarch64-3.6/Bio/NeuralNetwork
copying Bio/NeuralNetwork/Training.py -> build/lib.linux-aarch64-3.6/Bio/NeuralNetwork
copying Bio/NeuralNetwork/__init__.py -> build/lib.linux-aarch64-3.6/Bio/NeuralNetwork
creating build/lib.linux-aarch64-3.6/Bio/NeuralNetwork/BackPropagation
copying Bio/NeuralNetwork/BackPropagation/Layer.py -> build/lib.linux-aarch64-3.6/Bio/NeuralNetwork/BackPropagation
copying Bio/NeuralNetwork/BackPropagation/__init__.py -> build/lib.linux-aarch64-3.6/Bio/NeuralNetwork/BackPropagation
copying Bio/NeuralNetwork/BackPropagation/Network.py -> build/lib.linux-aarch64-3.6/Bio/NeuralNetwork/BackPropagation
creating build/lib.linux-aarch64-3.6/Bio/NeuralNetwork/Gene
copying Bio/NeuralNetwork/Gene/Pattern.py -> build/lib.linux-aarch64-3.6/Bio/NeuralNetwork/Gene
copying Bio/NeuralNetwork/Gene/__init__.py -> build/lib.linux-aarch64-3.6/Bio/NeuralNetwork/Gene
copying Bio/NeuralNetwork/Gene/Schema.py -> build/lib.linux-aarch64-3.6/Bio/NeuralNetwork/Gene
copying Bio/NeuralNetwork/Gene/Signature.py -> build/lib.linux-aarch64-3.6/Bio/NeuralNetwork/Gene
copying Bio/NeuralNetwork/Gene/Motif.py -> build/lib.linux-aarch64-3.6/Bio/NeuralNetwork/Gene
creating build/lib.linux-aarch64-3.6/Bio/Nexus
copying Bio/Nexus/Nodes.py -> build/lib.linux-aarch64-3.6/Bio/Nexus
copying Bio/Nexus/Trees.py -> build/lib.linux-aarch64-3.6/Bio/Nexus
copying Bio/Nexus/StandardData.py -> build/lib.linux-aarch64-3.6/Bio/Nexus
copying Bio/Nexus/__init__.py -> build/lib.linux-aarch64-3.6/Bio/Nexus
copying Bio/Nexus/Nexus.py -> build/lib.linux-aarch64-3.6/Bio/Nexus
creating build/lib.linux-aarch64-3.6/Bio/NMR
copying Bio/NMR/__init__.py -> build/lib.linux-aarch64-3.6/Bio/NMR
copying Bio/NMR/NOEtools.py -> build/lib.linux-aarch64-3.6/Bio/NMR
copying Bio/NMR/xpktools.py -> build/lib.linux-aarch64-3.6/Bio/NMR
creating build/lib.linux-aarch64-3.6/Bio/Pathway
copying Bio/Pathway/__init__.py -> build/lib.linux-aarch64-3.6/Bio/Pathway
creating build/lib.linux-aarch64-3.6/Bio/Pathway/Rep
copying Bio/Pathway/Rep/__init__.py -> build/lib.linux-aarch64-3.6/Bio/Pathway/Rep
copying Bio/Pathway/Rep/Graph.py -> build/lib.linux-aarch64-3.6/Bio/Pathway/Rep
copying Bio/Pathway/Rep/MultiGraph.py -> build/lib.linux-aarch64-3.6/Bio/Pathway/Rep
copying Bio/PDB/HSExposure.py -> build/lib.linux-aarch64-3.6/Bio/PDB
copying Bio/PDB/Model.py -> build/lib.linux-aarch64-3.6/Bio/PDB
copying Bio/PDB/Vector.py -> build/lib.linux-aarch64-3.6/Bio/PDB
copying Bio/PDB/Residue.py -> build/lib.linux-aarch64-3.6/Bio/PDB
copying Bio/PDB/PDBExceptions.py -> build/lib.linux-aarch64-3.6/Bio/PDB
copying Bio/PDB/PSEA.py -> build/lib.linux-aarch64-3.6/Bio/PDB
copying Bio/PDB/StructureAlignment.py -> build/lib.linux-aarch64-3.6/Bio/PDB
copying Bio/PDB/Atom.py -> build/lib.linux-aarch64-3.6/Bio/PDB
copying Bio/PDB/Superimposer.py -> build/lib.linux-aarch64-3.6/Bio/PDB
copying Bio/PDB/DSSP.py -> build/lib.linux-aarch64-3.6/Bio/PDB
copying Bio/PDB/Selection.py -> build/lib.linux-aarch64-3.6/Bio/PDB
copying Bio/PDB/__init__.py -> build/lib.linux-aarch64-3.6/Bio/PDB
copying Bio/PDB/StructureBuilder.py -> build/lib.linux-aarch64-3.6/Bio/PDB
copying Bio/PDB/Polypeptide.py -> build/lib.linux-aarch64-3.6/Bio/PDB
copying Bio/PDB/FragmentMapper.py -> build/lib.linux-aarch64-3.6/Bio/PDB
copying Bio/PDB/AbstractPropertyMap.py -> build/lib.linux-aarch64-3.6/Bio/PDB
copying Bio/PDB/Structure.py -> build/lib.linux-aarch64-3.6/Bio/PDB
copying Bio/PDB/NeighborSearch.py -> build/lib.linux-aarch64-3.6/Bio/PDB
copying Bio/PDB/ResidueDepth.py -> build/lib.linux-aarch64-3.6/Bio/PDB
copying Bio/PDB/PDBIO.py -> build/lib.linux-aarch64-3.6/Bio/PDB
copying Bio/PDB/PDBParser.py -> build/lib.linux-aarch64-3.6/Bio/PDB
copying Bio/PDB/PDBList.py -> build/lib.linux-aarch64-3.6/Bio/PDB
copying Bio/PDB/Entity.py -> build/lib.linux-aarch64-3.6/Bio/PDB
copying Bio/PDB/parse_pdb_header.py -> build/lib.linux-aarch64-3.6/Bio/PDB
copying Bio/PDB/MMCIF2Dict.py -> build/lib.linux-aarch64-3.6/Bio/PDB
copying Bio/PDB/MMCIFParser.py -> build/lib.linux-aarch64-3.6/Bio/PDB
copying Bio/PDB/Dice.py -> build/lib.linux-aarch64-3.6/Bio/PDB
copying Bio/PDB/NACCESS.py -> build/lib.linux-aarch64-3.6/Bio/PDB
copying Bio/PDB/Chain.py -> build/lib.linux-aarch64-3.6/Bio/PDB
creating build/lib.linux-aarch64-3.6/Bio/PopGen
copying Bio/PopGen/__init__.py -> build/lib.linux-aarch64-3.6/Bio/PopGen
creating build/lib.linux-aarch64-3.6/Bio/PopGen/GenePop
copying Bio/PopGen/GenePop/Controller.py -> build/lib.linux-aarch64-3.6/Bio/PopGen/GenePop
copying Bio/PopGen/GenePop/EasyController.py -> build/lib.linux-aarch64-3.6/Bio/PopGen/GenePop
copying Bio/PopGen/GenePop/Utils.py -> build/lib.linux-aarch64-3.6/Bio/PopGen/GenePop
copying Bio/PopGen/GenePop/__init__.py -> build/lib.linux-aarch64-3.6/Bio/PopGen/GenePop
copying Bio/PopGen/GenePop/LargeFileParser.py -> build/lib.linux-aarch64-3.6/Bio/PopGen/GenePop
copying Bio/PopGen/GenePop/FileParser.py -> build/lib.linux-aarch64-3.6/Bio/PopGen/GenePop
creating build/lib.linux-aarch64-3.6/Bio/Restriction
copying Bio/Restriction/Restriction_Dictionary.py -> build/lib.linux-aarch64-3.6/Bio/Restriction
copying Bio/Restriction/__init__.py -> build/lib.linux-aarch64-3.6/Bio/Restriction
copying Bio/Restriction/RanaConfig.py -> build/lib.linux-aarch64-3.6/Bio/Restriction
copying Bio/Restriction/PrintFormat.py -> build/lib.linux-aarch64-3.6/Bio/Restriction
copying Bio/Restriction/Restriction.py -> build/lib.linux-aarch64-3.6/Bio/Restriction
creating build/lib.linux-aarch64-3.6/Bio/SCOP
copying Bio/SCOP/Raf.py -> build/lib.linux-aarch64-3.6/Bio/SCOP
copying Bio/SCOP/__init__.py -> build/lib.linux-aarch64-3.6/Bio/SCOP
copying Bio/SCOP/Hie.py -> build/lib.linux-aarch64-3.6/Bio/SCOP
copying Bio/SCOP/Des.py -> build/lib.linux-aarch64-3.6/Bio/SCOP
copying Bio/SCOP/Residues.py -> build/lib.linux-aarch64-3.6/Bio/SCOP
copying Bio/SCOP/Cla.py -> build/lib.linux-aarch64-3.6/Bio/SCOP
copying Bio/SCOP/Dom.py -> build/lib.linux-aarch64-3.6/Bio/SCOP
creating build/lib.linux-aarch64-3.6/Bio/SearchIO
copying Bio/SearchIO/BlatIO.py -> build/lib.linux-aarch64-3.6/Bio/SearchIO
copying Bio/SearchIO/_utils.py -> build/lib.linux-aarch64-3.6/Bio/SearchIO
copying Bio/SearchIO/FastaIO.py -> build/lib.linux-aarch64-3.6/Bio/SearchIO
copying Bio/SearchIO/_index.py -> build/lib.linux-aarch64-3.6/Bio/SearchIO
copying Bio/SearchIO/__init__.py -> build/lib.linux-aarch64-3.6/Bio/SearchIO
creating build/lib.linux-aarch64-3.6/Bio/SearchIO/_model
copying Bio/SearchIO/_model/hit.py -> build/lib.linux-aarch64-3.6/Bio/SearchIO/_model
copying Bio/SearchIO/_model/__init__.py -> build/lib.linux-aarch64-3.6/Bio/SearchIO/_model
copying Bio/SearchIO/_model/hsp.py -> build/lib.linux-aarch64-3.6/Bio/SearchIO/_model
copying Bio/SearchIO/_model/_base.py -> build/lib.linux-aarch64-3.6/Bio/SearchIO/_model
copying Bio/SearchIO/_model/query.py -> build/lib.linux-aarch64-3.6/Bio/SearchIO/_model
creating build/lib.linux-aarch64-3.6/Bio/SearchIO/BlastIO
copying Bio/SearchIO/BlastIO/blast_text.py -> build/lib.linux-aarch64-3.6/Bio/SearchIO/BlastIO
copying Bio/SearchIO/BlastIO/__init__.py -> build/lib.linux-aarch64-3.6/Bio/SearchIO/BlastIO
copying Bio/SearchIO/BlastIO/blast_xml.py -> build/lib.linux-aarch64-3.6/Bio/SearchIO/BlastIO
copying Bio/SearchIO/BlastIO/blast_tab.py -> build/lib.linux-aarch64-3.6/Bio/SearchIO/BlastIO
creating build/lib.linux-aarch64-3.6/Bio/SearchIO/HmmerIO
copying Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/lib.linux-aarch64-3.6/Bio/SearchIO/HmmerIO
copying Bio/SearchIO/HmmerIO/__init__.py -> build/lib.linux-aarch64-3.6/Bio/SearchIO/HmmerIO
copying Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/lib.linux-aarch64-3.6/Bio/SearchIO/HmmerIO
copying Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/lib.linux-aarch64-3.6/Bio/SearchIO/HmmerIO
copying Bio/SearchIO/HmmerIO/_base.py -> build/lib.linux-aarch64-3.6/Bio/SearchIO/HmmerIO
copying Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/lib.linux-aarch64-3.6/Bio/SearchIO/HmmerIO
creating build/lib.linux-aarch64-3.6/Bio/SearchIO/ExonerateIO
copying Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/lib.linux-aarch64-3.6/Bio/SearchIO/ExonerateIO
copying Bio/SearchIO/ExonerateIO/__init__.py -> build/lib.linux-aarch64-3.6/Bio/SearchIO/ExonerateIO
copying Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/lib.linux-aarch64-3.6/Bio/SearchIO/ExonerateIO
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copying Bio/Entrez/DTDs/esummary-v1.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_Rsite.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_Submit.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/bookdoc_120101.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_General.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NSE.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_General.mod.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/PRF_General.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_BioTree.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/eInfo_020511.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_Biblio.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_Access.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_Cdd.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/bookdoc_110101.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/nlmserials_100101.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/SP_General.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/egquery.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_Medlars.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_Organism.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_PubMed.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_Seqset.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/einfo.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/pubmed_100301.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/mathml2.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/PIR_General.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/nlmserials_080101.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/SP_General.mod.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/eLink_101123.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/Docsum_3_2.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_Sequence.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_Mim.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_RNA.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/pubmed_120101.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/PIR_General.mod.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_Seqres.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/PDB_General.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/Docsum_3_3.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/nlmcommon_080101.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/bookdoc_150101.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/nlmmedline_090101.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/nlmcommon_011101.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/Docsum_3_4.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/HomoloGene.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_Medline.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_Systems.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/Docsum_3_1.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/pubmed_090101.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_Blast4.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/pubmed_110101.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/NCBI_Project.dtd -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/math.ent -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isomopf.ent -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isomscr.ent -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/list.ent -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/xmlspecchars.ent -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/link.ent -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isotech.ent -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isocyr2.ent -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/XHTMLtablesetup.ent -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/display.ent -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/references.ent -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/journalmeta.ent -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/modules.ent -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/mathmlsetup.ent -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isodia.ent -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isobox.ent -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/articlemeta.ent -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/archivecustom-models.ent -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isogrk3.ent -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isomfrk.ent -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/para.ent -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isopub.ent -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isogrk4.ent -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isolat1.ent -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isoamsc.ent -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/archivecustom-mixes.ent -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isoamsn.ent -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/format.ent -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isoamsa.ent -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isoamsb.ent -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/section.ent -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isogrk2.ent -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/phrase.ent -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/default-mixes.ent -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isonum.ent -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isogrk1.ent -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isolat2.ent -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/archivecustom-modules.ent -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/mmlextra.ent -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isoamsr.ent -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/common.ent -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/mmlalias.ent -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/chars.ent -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/default-classes.ent -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/backmatter.ent -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/archivecustom-classes.ent -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/notat.ent -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isoamso.ent -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/isocyr1.ent -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
copying Bio/Entrez/DTDs/mathml2-qname-1.mod -> build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs
running build_ext
building 'Bio.cpairwise2' extension
creating build/temp.linux-aarch64-3.6
creating build/temp.linux-aarch64-3.6/Bio
gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z,relro -Wl,-z,now -fPIC -I/usr/include/python3.6m -c Bio/cpairwise2module.c -o build/temp.linux-aarch64-3.6/Bio/cpairwise2module.o
In file included from /usr/include/python3.6m/Python.h:86:0,
                 from Bio/cpairwise2module.c:14:
Bio/cpairwise2module.c: In function ‘cpairwise2__make_score_matrix_fast’:
/usr/include/python3.6m/listobject.h:73:58: warning: ‘py_trace_row’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 #define PyList_SET_ITEM(op, i, v) (((PyListObject *)(op))->ob_item[i] = (v))
                                                          ^~
Bio/cpairwise2module.c:343:34: note: ‘py_trace_row’ was declared here
         PyObject *py_score_row, *py_trace_row;
                                  ^~~~~~~~~~~~
gcc -pthread -shared -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -g -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z,relro -Wl,-z,now build/temp.linux-aarch64-3.6/Bio/cpairwise2module.o -L/usr/lib64 -lpython3.6m -o build/lib.linux-aarch64-3.6/Bio/cpairwise2.cpython-36m-aarch64-linux-gnu.so
building 'Bio.trie' extension
gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z,relro -Wl,-z,now -fPIC -IBio -I/usr/include/python3.6m -c Bio/triemodule.c -o build/temp.linux-aarch64-3.6/Bio/triemodule.o
gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z,relro -Wl,-z,now -fPIC -IBio -I/usr/include/python3.6m -c Bio/trie.c -o build/temp.linux-aarch64-3.6/Bio/trie.o
gcc -pthread -shared -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -g -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z,relro -Wl,-z,now build/temp.linux-aarch64-3.6/Bio/triemodule.o build/temp.linux-aarch64-3.6/Bio/trie.o -L/usr/lib64 -lpython3.6m -o build/lib.linux-aarch64-3.6/Bio/trie.cpython-36m-aarch64-linux-gnu.so
building 'Bio.Nexus.cnexus' extension
creating build/temp.linux-aarch64-3.6/Bio/Nexus
gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z,relro -Wl,-z,now -fPIC -I/usr/include/python3.6m -c Bio/Nexus/cnexus.c -o build/temp.linux-aarch64-3.6/Bio/Nexus/cnexus.o
gcc -pthread -shared -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -g -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z,relro -Wl,-z,now build/temp.linux-aarch64-3.6/Bio/Nexus/cnexus.o -L/usr/lib64 -lpython3.6m -o build/lib.linux-aarch64-3.6/Bio/Nexus/cnexus.cpython-36m-aarch64-linux-gnu.so
building 'Bio.Cluster.cluster' extension
creating build/temp.linux-aarch64-3.6/Bio/Cluster
gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z,relro -Wl,-z,now -fPIC -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c Bio/Cluster/clustermodule.c -o build/temp.linux-aarch64-3.6/Bio/Cluster/clustermodule.o
gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z,relro -Wl,-z,now -fPIC -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c Bio/Cluster/cluster.c -o build/temp.linux-aarch64-3.6/Bio/Cluster/cluster.o
gcc -pthread -shared -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -g -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z,relro -Wl,-z,now build/temp.linux-aarch64-3.6/Bio/Cluster/clustermodule.o build/temp.linux-aarch64-3.6/Bio/Cluster/cluster.o -L/usr/lib64 -lpython3.6m -o build/lib.linux-aarch64-3.6/Bio/Cluster/cluster.cpython-36m-aarch64-linux-gnu.so
building 'Bio.KDTree._CKDTree' extension
creating build/temp.linux-aarch64-3.6/Bio/KDTree
gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z,relro -Wl,-z,now -fPIC -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c Bio/KDTree/KDTree.c -o build/temp.linux-aarch64-3.6/Bio/KDTree/KDTree.o
gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z,relro -Wl,-z,now -fPIC -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c Bio/KDTree/KDTreemodule.c -o build/temp.linux-aarch64-3.6/Bio/KDTree/KDTreemodule.o
gcc -pthread -shared -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -g -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z,relro -Wl,-z,now build/temp.linux-aarch64-3.6/Bio/KDTree/KDTree.o build/temp.linux-aarch64-3.6/Bio/KDTree/KDTreemodule.o -L/usr/lib64 -lpython3.6m -o build/lib.linux-aarch64-3.6/Bio/KDTree/_CKDTree.cpython-36m-aarch64-linux-gnu.so
building 'Bio.motifs._pwm' extension
creating build/temp.linux-aarch64-3.6/Bio/motifs
gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z,relro -Wl,-z,now -fPIC -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c Bio/motifs/_pwm.c -o build/temp.linux-aarch64-3.6/Bio/motifs/_pwm.o
gcc -pthread -shared -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -g -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z,relro -Wl,-z,now build/temp.linux-aarch64-3.6/Bio/motifs/_pwm.o -L/usr/lib64 -lpython3.6m -o build/lib.linux-aarch64-3.6/Bio/motifs/_pwm.cpython-36m-aarch64-linux-gnu.so
building 'Bio.PDB.QCPSuperimposer.qcprotmodule' extension
creating build/temp.linux-aarch64-3.6/Bio/PDB
creating build/temp.linux-aarch64-3.6/Bio/PDB/QCPSuperimposer
gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z,relro -Wl,-z,now -fPIC -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c Bio/PDB/QCPSuperimposer/qcprotmodule.c -o build/temp.linux-aarch64-3.6/Bio/PDB/QCPSuperimposer/qcprotmodule.o
gcc -pthread -shared -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -g -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -Wl,-z,relro -Wl,-z,now build/temp.linux-aarch64-3.6/Bio/PDB/QCPSuperimposer/qcprotmodule.o -L/usr/lib64 -lpython3.6m -o build/lib.linux-aarch64-3.6/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-36m-aarch64-linux-gnu.so
+ popd
+ exit 0
~/build/BUILD/python-biopython-1.70
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.QCUcqV
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64
++ dirname /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64
+ cd python-biopython-1.70
~/build/BUILD/python-biopython-1.70/python3 ~/build/BUILD/python-biopython-1.70
+ pushd python3
+ /usr/bin/python3 setup.py install -O1 --skip-build --root=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64 --install-data=/usr/share/python-biopython
running install
running install_lib
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/BioSQL
copying build/lib.linux-aarch64-3.6/BioSQL/DBUtils.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/BioSQL
copying build/lib.linux-aarch64-3.6/BioSQL/Loader.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/BioSQL
copying build/lib.linux-aarch64-3.6/BioSQL/BioSeq.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/BioSQL
copying build/lib.linux-aarch64-3.6/BioSQL/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/BioSQL
copying build/lib.linux-aarch64-3.6/BioSQL/BioSeqDatabase.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/BioSQL
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Phylo
copying build/lib.linux-aarch64-3.6/Bio/Phylo/NewickIO.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Phylo
copying build/lib.linux-aarch64-3.6/Bio/Phylo/_io.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Phylo
copying build/lib.linux-aarch64-3.6/Bio/Phylo/_utils.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Phylo
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Phylo/Applications
copying build/lib.linux-aarch64-3.6/Bio/Phylo/Applications/_Phyml.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Phylo/Applications
copying build/lib.linux-aarch64-3.6/Bio/Phylo/Applications/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Phylo/Applications
copying build/lib.linux-aarch64-3.6/Bio/Phylo/Applications/_Raxml.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Phylo/Applications
copying build/lib.linux-aarch64-3.6/Bio/Phylo/Applications/_Fasttree.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Phylo/Applications
copying build/lib.linux-aarch64-3.6/Bio/Phylo/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Phylo
copying build/lib.linux-aarch64-3.6/Bio/Phylo/PhyloXML.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Phylo
copying build/lib.linux-aarch64-3.6/Bio/Phylo/_cdao_owl.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Phylo
copying build/lib.linux-aarch64-3.6/Bio/Phylo/Newick.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Phylo
copying build/lib.linux-aarch64-3.6/Bio/Phylo/Consensus.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Phylo
copying build/lib.linux-aarch64-3.6/Bio/Phylo/TreeConstruction.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Phylo
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Phylo/PAML
copying build/lib.linux-aarch64-3.6/Bio/Phylo/PAML/_parse_yn00.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Phylo/PAML
copying build/lib.linux-aarch64-3.6/Bio/Phylo/PAML/_paml.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Phylo/PAML
copying build/lib.linux-aarch64-3.6/Bio/Phylo/PAML/_parse_codeml.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Phylo/PAML
copying build/lib.linux-aarch64-3.6/Bio/Phylo/PAML/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Phylo/PAML
copying build/lib.linux-aarch64-3.6/Bio/Phylo/PAML/_parse_baseml.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Phylo/PAML
copying build/lib.linux-aarch64-3.6/Bio/Phylo/PAML/chi2.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Phylo/PAML
copying build/lib.linux-aarch64-3.6/Bio/Phylo/PAML/codeml.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Phylo/PAML
copying build/lib.linux-aarch64-3.6/Bio/Phylo/PAML/baseml.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Phylo/PAML
copying build/lib.linux-aarch64-3.6/Bio/Phylo/PAML/yn00.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Phylo/PAML
copying build/lib.linux-aarch64-3.6/Bio/Phylo/NexusIO.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Phylo
copying build/lib.linux-aarch64-3.6/Bio/Phylo/BaseTree.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Phylo
copying build/lib.linux-aarch64-3.6/Bio/Phylo/NeXML.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Phylo
copying build/lib.linux-aarch64-3.6/Bio/Phylo/CDAO.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Phylo
copying build/lib.linux-aarch64-3.6/Bio/Phylo/CDAOIO.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Phylo
copying build/lib.linux-aarch64-3.6/Bio/Phylo/NeXMLIO.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Phylo
copying build/lib.linux-aarch64-3.6/Bio/Phylo/PhyloXMLIO.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Phylo
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez
copying build/lib.linux-aarch64-3.6/Bio/Entrez/Parser.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez
copying build/lib.linux-aarch64-3.6/Bio/Entrez/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/elink_020122.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/OMSSA.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/PDB_General.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/HomoloGene.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/math.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/pubmed_140101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/isomopf.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/eSearch_020511.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/EMBL_General.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_Mime.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/MMDB_Features.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/isomscr.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/list.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/GenBank_General.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/htmltable.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/GenBank_General.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NSE.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/xmlspecchars.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/eLink_090910.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/link.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/bookdoc_100301.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/isotech.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/mathml2-qname-1.mod -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/isocyr2.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/pubmed_130501.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/MMDB.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_Protein.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/XHTMLtablesetup.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/display.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/nlmmedline_080101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/archivearticle.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/pmc-1.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_Variation.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/references.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/journalmeta.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/modules.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/mathmlsetup.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/ePost_020511.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/isodia.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/nlmcommon_090101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/isobox.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/nlmmedline_011101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_Gene.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/Docsum_3_0.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/eSummary_041029.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/articlemeta.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/bookdoc_130101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_TxInit.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/OMSSA.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/archivecustom-models.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/isogrk3.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_BioSource.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/isomfrk.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_Pub.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/EMBL_General.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/pubmed_100101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/pubmed_150101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/bookdoc_140101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/para.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/isopub.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/PRF_General.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/pubmed_130101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/isogrk4.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/isolat1.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_TSeq.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/isoamsc.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/archivecustom-mixes.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/pubmed_080101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/isoamsn.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/format.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/eSpell.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/pubmed_020114.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_all.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/MMDB.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_Remap.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/esearch.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/taxon.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/esummary-v1.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_Rsite.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_Submit.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/bookdoc_120101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_General.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NSE.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_General.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/PRF_General.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/isoamsa.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_BioTree.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/eInfo_020511.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_Biblio.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/isoamsb.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_Access.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/section.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_Cdd.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/isogrk2.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/phrase.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/bookdoc_110101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/default-mixes.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/nlmserials_100101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/SP_General.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/egquery.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_Medlars.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_Organism.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_PubMed.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/isonum.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/isogrk1.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/isolat2.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_Seqset.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/archivecustom-modules.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/mmlextra.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/isoamsr.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/common.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/mmlalias.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/einfo.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/pubmed_100301.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/chars.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/mathml2.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/PIR_General.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/nlmserials_080101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/SP_General.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/eLink_101123.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/Docsum_3_2.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/default-classes.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_Sequence.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_Mim.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_RNA.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/pubmed_120101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/PIR_General.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_Seqres.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/PDB_General.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/Docsum_3_3.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/backmatter.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/nlmcommon_080101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/archivecustom-classes.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/bookdoc_150101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/notat.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/nlmmedline_090101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/nlmcommon_011101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/Docsum_3_4.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/HomoloGene.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_Medline.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_Systems.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/Docsum_3_1.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/isoamso.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/pubmed_090101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_Blast4.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/pubmed_110101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/isocyr1.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-3.6/Bio/Entrez/DTDs/NCBI_Project.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Entrez/DTDs
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/UniProt
copying build/lib.linux-aarch64-3.6/Bio/UniProt/GOA.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/UniProt
copying build/lib.linux-aarch64-3.6/Bio/UniProt/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/UniProt
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Pathway
copying build/lib.linux-aarch64-3.6/Bio/Pathway/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Pathway
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Pathway/Rep
copying build/lib.linux-aarch64-3.6/Bio/Pathway/Rep/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Pathway/Rep
copying build/lib.linux-aarch64-3.6/Bio/Pathway/Rep/Graph.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Pathway/Rep
copying build/lib.linux-aarch64-3.6/Bio/Pathway/Rep/MultiGraph.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Pathway/Rep
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/ExPASy
copying build/lib.linux-aarch64-3.6/Bio/ExPASy/cellosaurus.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/ExPASy
copying build/lib.linux-aarch64-3.6/Bio/ExPASy/Prosite.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/ExPASy
copying build/lib.linux-aarch64-3.6/Bio/ExPASy/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/ExPASy
copying build/lib.linux-aarch64-3.6/Bio/ExPASy/Prodoc.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/ExPASy
copying build/lib.linux-aarch64-3.6/Bio/ExPASy/Enzyme.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/ExPASy
copying build/lib.linux-aarch64-3.6/Bio/ExPASy/ScanProsite.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/ExPASy
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SCOP
copying build/lib.linux-aarch64-3.6/Bio/SCOP/Raf.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SCOP
copying build/lib.linux-aarch64-3.6/Bio/SCOP/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SCOP
copying build/lib.linux-aarch64-3.6/Bio/SCOP/Hie.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SCOP
copying build/lib.linux-aarch64-3.6/Bio/SCOP/Des.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SCOP
copying build/lib.linux-aarch64-3.6/Bio/SCOP/Residues.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SCOP
copying build/lib.linux-aarch64-3.6/Bio/SCOP/Cla.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SCOP
copying build/lib.linux-aarch64-3.6/Bio/SCOP/Dom.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SCOP
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Restriction
copying build/lib.linux-aarch64-3.6/Bio/Restriction/Restriction_Dictionary.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Restriction
copying build/lib.linux-aarch64-3.6/Bio/Restriction/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Restriction
copying build/lib.linux-aarch64-3.6/Bio/Restriction/RanaConfig.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Restriction
copying build/lib.linux-aarch64-3.6/Bio/Restriction/PrintFormat.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Restriction
copying build/lib.linux-aarch64-3.6/Bio/Restriction/Restriction.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Restriction
copying build/lib.linux-aarch64-3.6/Bio/triefind.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Wise
copying build/lib.linux-aarch64-3.6/Bio/Wise/psw.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Wise
copying build/lib.linux-aarch64-3.6/Bio/Wise/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Wise
copying build/lib.linux-aarch64-3.6/Bio/Wise/dnal.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Wise
copying build/lib.linux-aarch64-3.6/Bio/File.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SearchIO
copying build/lib.linux-aarch64-3.6/Bio/SearchIO/BlatIO.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SearchIO
copying build/lib.linux-aarch64-3.6/Bio/SearchIO/_utils.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SearchIO
copying build/lib.linux-aarch64-3.6/Bio/SearchIO/FastaIO.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SearchIO
copying build/lib.linux-aarch64-3.6/Bio/SearchIO/_index.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SearchIO
copying build/lib.linux-aarch64-3.6/Bio/SearchIO/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SearchIO
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SearchIO/HmmerIO
copying build/lib.linux-aarch64-3.6/Bio/SearchIO/HmmerIO/hmmer3_text.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SearchIO/HmmerIO
copying build/lib.linux-aarch64-3.6/Bio/SearchIO/HmmerIO/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SearchIO/HmmerIO
copying build/lib.linux-aarch64-3.6/Bio/SearchIO/HmmerIO/hmmer2_text.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SearchIO/HmmerIO
copying build/lib.linux-aarch64-3.6/Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SearchIO/HmmerIO
copying build/lib.linux-aarch64-3.6/Bio/SearchIO/HmmerIO/_base.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SearchIO/HmmerIO
copying build/lib.linux-aarch64-3.6/Bio/SearchIO/HmmerIO/hmmer3_tab.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SearchIO/HmmerIO
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SearchIO/BlastIO
copying build/lib.linux-aarch64-3.6/Bio/SearchIO/BlastIO/blast_text.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SearchIO/BlastIO
copying build/lib.linux-aarch64-3.6/Bio/SearchIO/BlastIO/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SearchIO/BlastIO
copying build/lib.linux-aarch64-3.6/Bio/SearchIO/BlastIO/blast_xml.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SearchIO/BlastIO
copying build/lib.linux-aarch64-3.6/Bio/SearchIO/BlastIO/blast_tab.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SearchIO/BlastIO
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SearchIO/_model
copying build/lib.linux-aarch64-3.6/Bio/SearchIO/_model/hit.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SearchIO/_model
copying build/lib.linux-aarch64-3.6/Bio/SearchIO/_model/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SearchIO/_model
copying build/lib.linux-aarch64-3.6/Bio/SearchIO/_model/hsp.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SearchIO/_model
copying build/lib.linux-aarch64-3.6/Bio/SearchIO/_model/_base.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SearchIO/_model
copying build/lib.linux-aarch64-3.6/Bio/SearchIO/_model/query.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SearchIO/_model
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SearchIO/ExonerateIO
copying build/lib.linux-aarch64-3.6/Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SearchIO/ExonerateIO
copying build/lib.linux-aarch64-3.6/Bio/SearchIO/ExonerateIO/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SearchIO/ExonerateIO
copying build/lib.linux-aarch64-3.6/Bio/SearchIO/ExonerateIO/exonerate_text.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SearchIO/ExonerateIO
copying build/lib.linux-aarch64-3.6/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SearchIO/ExonerateIO
copying build/lib.linux-aarch64-3.6/Bio/SearchIO/ExonerateIO/_base.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SearchIO/ExonerateIO
copying build/lib.linux-aarch64-3.6/Bio/Seq.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/AlignIO
copying build/lib.linux-aarch64-3.6/Bio/AlignIO/FastaIO.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/AlignIO
copying build/lib.linux-aarch64-3.6/Bio/AlignIO/MauveIO.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/AlignIO
copying build/lib.linux-aarch64-3.6/Bio/AlignIO/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/AlignIO
copying build/lib.linux-aarch64-3.6/Bio/AlignIO/StockholmIO.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/AlignIO
copying build/lib.linux-aarch64-3.6/Bio/AlignIO/PhylipIO.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/AlignIO
copying build/lib.linux-aarch64-3.6/Bio/AlignIO/MafIO.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/AlignIO
copying build/lib.linux-aarch64-3.6/Bio/AlignIO/EmbossIO.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/AlignIO
copying build/lib.linux-aarch64-3.6/Bio/AlignIO/NexusIO.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/AlignIO
copying build/lib.linux-aarch64-3.6/Bio/AlignIO/Interfaces.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/AlignIO
copying build/lib.linux-aarch64-3.6/Bio/AlignIO/ClustalIO.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/AlignIO
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Blast
copying build/lib.linux-aarch64-3.6/Bio/Blast/Applications.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Blast
copying build/lib.linux-aarch64-3.6/Bio/Blast/NCBIWWW.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Blast
copying build/lib.linux-aarch64-3.6/Bio/Blast/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Blast
copying build/lib.linux-aarch64-3.6/Bio/Blast/NCBIXML.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Blast
copying build/lib.linux-aarch64-3.6/Bio/Blast/Record.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Blast
copying build/lib.linux-aarch64-3.6/Bio/Blast/NCBIStandalone.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Blast
copying build/lib.linux-aarch64-3.6/Bio/Blast/ParseBlastTable.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Blast
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Geo
copying build/lib.linux-aarch64-3.6/Bio/Geo/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Geo
copying build/lib.linux-aarch64-3.6/Bio/Geo/Record.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Geo
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/phenotype
copying build/lib.linux-aarch64-3.6/Bio/phenotype/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/phenotype
copying build/lib.linux-aarch64-3.6/Bio/phenotype/pm_fitting.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/phenotype
copying build/lib.linux-aarch64-3.6/Bio/phenotype/phen_micro.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/phenotype
copying build/lib.linux-aarch64-3.6/Bio/_utils.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/NeuralNetwork
copying build/lib.linux-aarch64-3.6/Bio/NeuralNetwork/StopTraining.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/NeuralNetwork
copying build/lib.linux-aarch64-3.6/Bio/NeuralNetwork/Training.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/NeuralNetwork
copying build/lib.linux-aarch64-3.6/Bio/NeuralNetwork/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/NeuralNetwork
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/NeuralNetwork/BackPropagation
copying build/lib.linux-aarch64-3.6/Bio/NeuralNetwork/BackPropagation/Layer.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/NeuralNetwork/BackPropagation
copying build/lib.linux-aarch64-3.6/Bio/NeuralNetwork/BackPropagation/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/NeuralNetwork/BackPropagation
copying build/lib.linux-aarch64-3.6/Bio/NeuralNetwork/BackPropagation/Network.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/NeuralNetwork/BackPropagation
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/NeuralNetwork/Gene
copying build/lib.linux-aarch64-3.6/Bio/NeuralNetwork/Gene/Pattern.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/NeuralNetwork/Gene
copying build/lib.linux-aarch64-3.6/Bio/NeuralNetwork/Gene/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/NeuralNetwork/Gene
copying build/lib.linux-aarch64-3.6/Bio/NeuralNetwork/Gene/Schema.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/NeuralNetwork/Gene
copying build/lib.linux-aarch64-3.6/Bio/NeuralNetwork/Gene/Signature.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/NeuralNetwork/Gene
copying build/lib.linux-aarch64-3.6/Bio/NeuralNetwork/Gene/Motif.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/NeuralNetwork/Gene
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/PopGen
copying build/lib.linux-aarch64-3.6/Bio/PopGen/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/PopGen
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/PopGen/GenePop
copying build/lib.linux-aarch64-3.6/Bio/PopGen/GenePop/Controller.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/PopGen/GenePop
copying build/lib.linux-aarch64-3.6/Bio/PopGen/GenePop/EasyController.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/PopGen/GenePop
copying build/lib.linux-aarch64-3.6/Bio/PopGen/GenePop/Utils.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/PopGen/GenePop
copying build/lib.linux-aarch64-3.6/Bio/PopGen/GenePop/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/PopGen/GenePop
copying build/lib.linux-aarch64-3.6/Bio/PopGen/GenePop/LargeFileParser.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/PopGen/GenePop
copying build/lib.linux-aarch64-3.6/Bio/PopGen/GenePop/FileParser.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/PopGen/GenePop
copying build/lib.linux-aarch64-3.6/Bio/trie.cpython-36m-aarch64-linux-gnu.so -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Crystal
copying build/lib.linux-aarch64-3.6/Bio/Crystal/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Crystal
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/GA
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/GA/Mutation
copying build/lib.linux-aarch64-3.6/Bio/GA/Mutation/General.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/GA/Mutation
copying build/lib.linux-aarch64-3.6/Bio/GA/Mutation/Simple.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/GA/Mutation
copying build/lib.linux-aarch64-3.6/Bio/GA/Mutation/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/GA/Mutation
copying build/lib.linux-aarch64-3.6/Bio/GA/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/GA
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/GA/Crossover
copying build/lib.linux-aarch64-3.6/Bio/GA/Crossover/Uniform.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/GA/Crossover
copying build/lib.linux-aarch64-3.6/Bio/GA/Crossover/General.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/GA/Crossover
copying build/lib.linux-aarch64-3.6/Bio/GA/Crossover/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/GA/Crossover
copying build/lib.linux-aarch64-3.6/Bio/GA/Crossover/GeneralPoint.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/GA/Crossover
copying build/lib.linux-aarch64-3.6/Bio/GA/Crossover/Point.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/GA/Crossover
copying build/lib.linux-aarch64-3.6/Bio/GA/Crossover/TwoPoint.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/GA/Crossover
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/GA/Selection
copying build/lib.linux-aarch64-3.6/Bio/GA/Selection/Diversity.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/GA/Selection
copying build/lib.linux-aarch64-3.6/Bio/GA/Selection/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/GA/Selection
copying build/lib.linux-aarch64-3.6/Bio/GA/Selection/RouletteWheel.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/GA/Selection
copying build/lib.linux-aarch64-3.6/Bio/GA/Selection/Tournament.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/GA/Selection
copying build/lib.linux-aarch64-3.6/Bio/GA/Selection/Abstract.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/GA/Selection
copying build/lib.linux-aarch64-3.6/Bio/GA/Organism.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/GA
copying build/lib.linux-aarch64-3.6/Bio/GA/Evolver.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/GA
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/GA/Repair
copying build/lib.linux-aarch64-3.6/Bio/GA/Repair/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/GA/Repair
copying build/lib.linux-aarch64-3.6/Bio/GA/Repair/Stabilizing.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/GA/Repair
copying build/lib.linux-aarch64-3.6/Bio/kNN.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio
copying build/lib.linux-aarch64-3.6/Bio/SeqRecord.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/motifs
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/motifs/applications
copying build/lib.linux-aarch64-3.6/Bio/motifs/applications/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/motifs/applications
copying build/lib.linux-aarch64-3.6/Bio/motifs/applications/_xxmotif.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/motifs/applications
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/motifs/jaspar
copying build/lib.linux-aarch64-3.6/Bio/motifs/jaspar/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/motifs/jaspar
copying build/lib.linux-aarch64-3.6/Bio/motifs/jaspar/db.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/motifs/jaspar
copying build/lib.linux-aarch64-3.6/Bio/motifs/thresholds.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/motifs
copying build/lib.linux-aarch64-3.6/Bio/motifs/_pwm.cpython-36m-aarch64-linux-gnu.so -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/motifs
copying build/lib.linux-aarch64-3.6/Bio/motifs/matrix.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/motifs
copying build/lib.linux-aarch64-3.6/Bio/motifs/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/motifs
copying build/lib.linux-aarch64-3.6/Bio/motifs/meme.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/motifs
copying build/lib.linux-aarch64-3.6/Bio/motifs/transfac.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/motifs
copying build/lib.linux-aarch64-3.6/Bio/motifs/alignace.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/motifs
copying build/lib.linux-aarch64-3.6/Bio/motifs/mast.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/motifs
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Application
copying build/lib.linux-aarch64-3.6/Bio/Application/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Application
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/KDTree
copying build/lib.linux-aarch64-3.6/Bio/KDTree/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/KDTree
copying build/lib.linux-aarch64-3.6/Bio/KDTree/_CKDTree.cpython-36m-aarch64-linux-gnu.so -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/KDTree
copying build/lib.linux-aarch64-3.6/Bio/KDTree/KDTree.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/KDTree
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/_py3k
copying build/lib.linux-aarch64-3.6/Bio/_py3k/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/_py3k
copying build/lib.linux-aarch64-3.6/Bio/ParserSupport.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio
copying build/lib.linux-aarch64-3.6/Bio/SeqFeature.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio
copying build/lib.linux-aarch64-3.6/Bio/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SeqIO
copying build/lib.linux-aarch64-3.6/Bio/SeqIO/PdbIO.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SeqIO
copying build/lib.linux-aarch64-3.6/Bio/SeqIO/SwissIO.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SeqIO
copying build/lib.linux-aarch64-3.6/Bio/SeqIO/_convert.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SeqIO
copying build/lib.linux-aarch64-3.6/Bio/SeqIO/FastaIO.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SeqIO
copying build/lib.linux-aarch64-3.6/Bio/SeqIO/InsdcIO.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SeqIO
copying build/lib.linux-aarch64-3.6/Bio/SeqIO/AceIO.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SeqIO
copying build/lib.linux-aarch64-3.6/Bio/SeqIO/_index.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SeqIO
copying build/lib.linux-aarch64-3.6/Bio/SeqIO/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SeqIO
copying build/lib.linux-aarch64-3.6/Bio/SeqIO/IgIO.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SeqIO
copying build/lib.linux-aarch64-3.6/Bio/SeqIO/UniprotIO.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SeqIO
copying build/lib.linux-aarch64-3.6/Bio/SeqIO/TabIO.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SeqIO
copying build/lib.linux-aarch64-3.6/Bio/SeqIO/PhdIO.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SeqIO
copying build/lib.linux-aarch64-3.6/Bio/SeqIO/SffIO.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SeqIO
copying build/lib.linux-aarch64-3.6/Bio/SeqIO/QualityIO.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SeqIO
copying build/lib.linux-aarch64-3.6/Bio/SeqIO/SeqXmlIO.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SeqIO
copying build/lib.linux-aarch64-3.6/Bio/SeqIO/AbiIO.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SeqIO
copying build/lib.linux-aarch64-3.6/Bio/SeqIO/Interfaces.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SeqIO
copying build/lib.linux-aarch64-3.6/Bio/SeqIO/PirIO.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SeqIO
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Statistics
copying build/lib.linux-aarch64-3.6/Bio/Statistics/lowess.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Statistics
copying build/lib.linux-aarch64-3.6/Bio/Statistics/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Statistics
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Graphics
copying build/lib.linux-aarch64-3.6/Bio/Graphics/ColorSpiral.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Graphics
copying build/lib.linux-aarch64-3.6/Bio/Graphics/BasicChromosome.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Graphics
copying build/lib.linux-aarch64-3.6/Bio/Graphics/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Graphics
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Graphics/GenomeDiagram
copying build/lib.linux-aarch64-3.6/Bio/Graphics/GenomeDiagram/_Diagram.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Graphics/GenomeDiagram
copying build/lib.linux-aarch64-3.6/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Graphics/GenomeDiagram
copying build/lib.linux-aarch64-3.6/Bio/Graphics/GenomeDiagram/_CrossLink.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Graphics/GenomeDiagram
copying build/lib.linux-aarch64-3.6/Bio/Graphics/GenomeDiagram/_Colors.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Graphics/GenomeDiagram
copying build/lib.linux-aarch64-3.6/Bio/Graphics/GenomeDiagram/_GraphSet.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Graphics/GenomeDiagram
copying build/lib.linux-aarch64-3.6/Bio/Graphics/GenomeDiagram/_Track.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Graphics/GenomeDiagram
copying build/lib.linux-aarch64-3.6/Bio/Graphics/GenomeDiagram/_Feature.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Graphics/GenomeDiagram
copying build/lib.linux-aarch64-3.6/Bio/Graphics/GenomeDiagram/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Graphics/GenomeDiagram
copying build/lib.linux-aarch64-3.6/Bio/Graphics/GenomeDiagram/_FeatureSet.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Graphics/GenomeDiagram
copying build/lib.linux-aarch64-3.6/Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Graphics/GenomeDiagram
copying build/lib.linux-aarch64-3.6/Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Graphics/GenomeDiagram
copying build/lib.linux-aarch64-3.6/Bio/Graphics/GenomeDiagram/_Graph.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Graphics/GenomeDiagram
copying build/lib.linux-aarch64-3.6/Bio/Graphics/KGML_vis.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Graphics
copying build/lib.linux-aarch64-3.6/Bio/Graphics/Comparative.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Graphics
copying build/lib.linux-aarch64-3.6/Bio/Graphics/Distribution.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Graphics
copying build/lib.linux-aarch64-3.6/Bio/Graphics/DisplayRepresentation.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Graphics
copying build/lib.linux-aarch64-3.6/Bio/cpairwise2.cpython-36m-aarch64-linux-gnu.so -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/GenBank
copying build/lib.linux-aarch64-3.6/Bio/GenBank/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/GenBank
copying build/lib.linux-aarch64-3.6/Bio/GenBank/utils.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/GenBank
copying build/lib.linux-aarch64-3.6/Bio/GenBank/Record.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/GenBank
copying build/lib.linux-aarch64-3.6/Bio/GenBank/Scanner.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/GenBank
copying build/lib.linux-aarch64-3.6/Bio/Index.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SwissProt
copying build/lib.linux-aarch64-3.6/Bio/SwissProt/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SwissProt
copying build/lib.linux-aarch64-3.6/Bio/SwissProt/KeyWList.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SwissProt
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Align
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Align/Applications
copying build/lib.linux-aarch64-3.6/Bio/Align/Applications/_Prank.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Align/Applications
copying build/lib.linux-aarch64-3.6/Bio/Align/Applications/_Clustalw.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Align/Applications
copying build/lib.linux-aarch64-3.6/Bio/Align/Applications/_Probcons.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Align/Applications
copying build/lib.linux-aarch64-3.6/Bio/Align/Applications/_Dialign.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Align/Applications
copying build/lib.linux-aarch64-3.6/Bio/Align/Applications/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Align/Applications
copying build/lib.linux-aarch64-3.6/Bio/Align/Applications/_ClustalOmega.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Align/Applications
copying build/lib.linux-aarch64-3.6/Bio/Align/Applications/_TCoffee.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Align/Applications
copying build/lib.linux-aarch64-3.6/Bio/Align/Applications/_MSAProbs.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Align/Applications
copying build/lib.linux-aarch64-3.6/Bio/Align/Applications/_Muscle.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Align/Applications
copying build/lib.linux-aarch64-3.6/Bio/Align/Applications/_Mafft.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Align/Applications
copying build/lib.linux-aarch64-3.6/Bio/Align/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Align
copying build/lib.linux-aarch64-3.6/Bio/Align/AlignInfo.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Align
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/NMR
copying build/lib.linux-aarch64-3.6/Bio/NMR/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/NMR
copying build/lib.linux-aarch64-3.6/Bio/NMR/NOEtools.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/NMR
copying build/lib.linux-aarch64-3.6/Bio/NMR/xpktools.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/NMR
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/UniGene
copying build/lib.linux-aarch64-3.6/Bio/UniGene/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/UniGene
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SubsMat
copying build/lib.linux-aarch64-3.6/Bio/SubsMat/FreqTable.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SubsMat
copying build/lib.linux-aarch64-3.6/Bio/SubsMat/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SubsMat
copying build/lib.linux-aarch64-3.6/Bio/SubsMat/MatrixInfo.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SubsMat
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Nexus
copying build/lib.linux-aarch64-3.6/Bio/Nexus/Nodes.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Nexus
copying build/lib.linux-aarch64-3.6/Bio/Nexus/Trees.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Nexus
copying build/lib.linux-aarch64-3.6/Bio/Nexus/StandardData.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Nexus
copying build/lib.linux-aarch64-3.6/Bio/Nexus/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Nexus
copying build/lib.linux-aarch64-3.6/Bio/Nexus/cnexus.cpython-36m-aarch64-linux-gnu.so -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Nexus
copying build/lib.linux-aarch64-3.6/Bio/Nexus/Nexus.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Nexus
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SVDSuperimposer
copying build/lib.linux-aarch64-3.6/Bio/SVDSuperimposer/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SVDSuperimposer
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Compass
copying build/lib.linux-aarch64-3.6/Bio/Compass/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Compass
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/FSSP
copying build/lib.linux-aarch64-3.6/Bio/FSSP/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/FSSP
copying build/lib.linux-aarch64-3.6/Bio/FSSP/FSSPTools.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/FSSP
copying build/lib.linux-aarch64-3.6/Bio/FSSP/fssp_rec.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/FSSP
copying build/lib.linux-aarch64-3.6/Bio/MaxEntropy.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Data
copying build/lib.linux-aarch64-3.6/Bio/Data/IUPACData.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Data
copying build/lib.linux-aarch64-3.6/Bio/Data/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Data
copying build/lib.linux-aarch64-3.6/Bio/Data/SCOPData.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Data
copying build/lib.linux-aarch64-3.6/Bio/Data/CodonTable.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Data
copying build/lib.linux-aarch64-3.6/Bio/pairwise2.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Alphabet
copying build/lib.linux-aarch64-3.6/Bio/Alphabet/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Alphabet
copying build/lib.linux-aarch64-3.6/Bio/Alphabet/IUPAC.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Alphabet
copying build/lib.linux-aarch64-3.6/Bio/Alphabet/Reduced.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Alphabet
copying build/lib.linux-aarch64-3.6/Bio/bgzf.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SeqUtils
copying build/lib.linux-aarch64-3.6/Bio/SeqUtils/ProtParamData.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SeqUtils
copying build/lib.linux-aarch64-3.6/Bio/SeqUtils/ProtParam.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SeqUtils
copying build/lib.linux-aarch64-3.6/Bio/SeqUtils/CodonUsageIndices.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SeqUtils
copying build/lib.linux-aarch64-3.6/Bio/SeqUtils/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SeqUtils
copying build/lib.linux-aarch64-3.6/Bio/SeqUtils/lcc.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SeqUtils
copying build/lib.linux-aarch64-3.6/Bio/SeqUtils/CodonUsage.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SeqUtils
copying build/lib.linux-aarch64-3.6/Bio/SeqUtils/CheckSum.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SeqUtils
copying build/lib.linux-aarch64-3.6/Bio/SeqUtils/IsoelectricPoint.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SeqUtils
copying build/lib.linux-aarch64-3.6/Bio/SeqUtils/MeltingTemp.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/SeqUtils
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Emboss
copying build/lib.linux-aarch64-3.6/Bio/Emboss/Applications.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Emboss
copying build/lib.linux-aarch64-3.6/Bio/Emboss/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Emboss
copying build/lib.linux-aarch64-3.6/Bio/Emboss/PrimerSearch.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Emboss
copying build/lib.linux-aarch64-3.6/Bio/Emboss/Primer3.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Emboss
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Cluster
copying build/lib.linux-aarch64-3.6/Bio/Cluster/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Cluster
copying build/lib.linux-aarch64-3.6/Bio/Cluster/cluster.cpython-36m-aarch64-linux-gnu.so -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Cluster
copying build/lib.linux-aarch64-3.6/Bio/MarkovModel.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/TogoWS
copying build/lib.linux-aarch64-3.6/Bio/TogoWS/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/TogoWS
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/CAPS
copying build/lib.linux-aarch64-3.6/Bio/CAPS/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/CAPS
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Sequencing
copying build/lib.linux-aarch64-3.6/Bio/Sequencing/Ace.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Sequencing
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Sequencing/Applications
copying build/lib.linux-aarch64-3.6/Bio/Sequencing/Applications/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Sequencing/Applications
copying build/lib.linux-aarch64-3.6/Bio/Sequencing/Applications/_bwa.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Sequencing/Applications
copying build/lib.linux-aarch64-3.6/Bio/Sequencing/Applications/_samtools.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Sequencing/Applications
copying build/lib.linux-aarch64-3.6/Bio/Sequencing/Applications/_Novoalign.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Sequencing/Applications
copying build/lib.linux-aarch64-3.6/Bio/Sequencing/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Sequencing
copying build/lib.linux-aarch64-3.6/Bio/Sequencing/Phd.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Sequencing
copying build/lib.linux-aarch64-3.6/Bio/NaiveBayes.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio
copying build/lib.linux-aarch64-3.6/Bio/LogisticRegression.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/PDB
copying build/lib.linux-aarch64-3.6/Bio/PDB/HSExposure.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/PDB
copying build/lib.linux-aarch64-3.6/Bio/PDB/Model.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/PDB
copying build/lib.linux-aarch64-3.6/Bio/PDB/Vector.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/PDB
copying build/lib.linux-aarch64-3.6/Bio/PDB/Residue.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/PDB
copying build/lib.linux-aarch64-3.6/Bio/PDB/PDBExceptions.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/PDB
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/PDB/QCPSuperimposer
copying build/lib.linux-aarch64-3.6/Bio/PDB/QCPSuperimposer/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/PDB/QCPSuperimposer
copying build/lib.linux-aarch64-3.6/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-36m-aarch64-linux-gnu.so -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/PDB/QCPSuperimposer
copying build/lib.linux-aarch64-3.6/Bio/PDB/PSEA.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/PDB
copying build/lib.linux-aarch64-3.6/Bio/PDB/StructureAlignment.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/PDB
copying build/lib.linux-aarch64-3.6/Bio/PDB/Atom.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/PDB
copying build/lib.linux-aarch64-3.6/Bio/PDB/Superimposer.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/PDB
copying build/lib.linux-aarch64-3.6/Bio/PDB/DSSP.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/PDB
copying build/lib.linux-aarch64-3.6/Bio/PDB/Selection.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/PDB
copying build/lib.linux-aarch64-3.6/Bio/PDB/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/PDB
copying build/lib.linux-aarch64-3.6/Bio/PDB/StructureBuilder.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/PDB
copying build/lib.linux-aarch64-3.6/Bio/PDB/Polypeptide.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/PDB
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/PDB/mmtf
copying build/lib.linux-aarch64-3.6/Bio/PDB/mmtf/DefaultParser.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/PDB/mmtf
copying build/lib.linux-aarch64-3.6/Bio/PDB/mmtf/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/PDB/mmtf
copying build/lib.linux-aarch64-3.6/Bio/PDB/FragmentMapper.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/PDB
copying build/lib.linux-aarch64-3.6/Bio/PDB/AbstractPropertyMap.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/PDB
copying build/lib.linux-aarch64-3.6/Bio/PDB/Structure.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/PDB
copying build/lib.linux-aarch64-3.6/Bio/PDB/NeighborSearch.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/PDB
copying build/lib.linux-aarch64-3.6/Bio/PDB/ResidueDepth.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/PDB
copying build/lib.linux-aarch64-3.6/Bio/PDB/PDBIO.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/PDB
copying build/lib.linux-aarch64-3.6/Bio/PDB/PDBParser.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/PDB
copying build/lib.linux-aarch64-3.6/Bio/PDB/PDBList.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/PDB
copying build/lib.linux-aarch64-3.6/Bio/PDB/Entity.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/PDB
copying build/lib.linux-aarch64-3.6/Bio/PDB/parse_pdb_header.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/PDB
copying build/lib.linux-aarch64-3.6/Bio/PDB/MMCIF2Dict.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/PDB
copying build/lib.linux-aarch64-3.6/Bio/PDB/MMCIFParser.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/PDB
copying build/lib.linux-aarch64-3.6/Bio/PDB/Dice.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/PDB
copying build/lib.linux-aarch64-3.6/Bio/PDB/NACCESS.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/PDB
copying build/lib.linux-aarch64-3.6/Bio/PDB/Chain.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/PDB
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/KEGG
copying build/lib.linux-aarch64-3.6/Bio/KEGG/REST.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/KEGG
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/KEGG/Compound
copying build/lib.linux-aarch64-3.6/Bio/KEGG/Compound/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/KEGG/Compound
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/KEGG/Map
copying build/lib.linux-aarch64-3.6/Bio/KEGG/Map/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/KEGG/Map
copying build/lib.linux-aarch64-3.6/Bio/KEGG/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/KEGG
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/KEGG/KGML
copying build/lib.linux-aarch64-3.6/Bio/KEGG/KGML/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/KEGG/KGML
copying build/lib.linux-aarch64-3.6/Bio/KEGG/KGML/KGML_parser.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/KEGG/KGML
copying build/lib.linux-aarch64-3.6/Bio/KEGG/KGML/KGML_pathway.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/KEGG/KGML
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/KEGG/Enzyme
copying build/lib.linux-aarch64-3.6/Bio/KEGG/Enzyme/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/KEGG/Enzyme
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/HMM
copying build/lib.linux-aarch64-3.6/Bio/HMM/Trainer.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/HMM
copying build/lib.linux-aarch64-3.6/Bio/HMM/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/HMM
copying build/lib.linux-aarch64-3.6/Bio/HMM/Utilities.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/HMM
copying build/lib.linux-aarch64-3.6/Bio/HMM/MarkovModel.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/HMM
copying build/lib.linux-aarch64-3.6/Bio/HMM/DynamicProgramming.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/HMM
copying build/lib.linux-aarch64-3.6/Bio/DocSQL.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Affy
copying build/lib.linux-aarch64-3.6/Bio/Affy/CelFile.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Affy
copying build/lib.linux-aarch64-3.6/Bio/Affy/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Affy
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/codonalign
copying build/lib.linux-aarch64-3.6/Bio/codonalign/codonseq.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/codonalign
copying build/lib.linux-aarch64-3.6/Bio/codonalign/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/codonalign
copying build/lib.linux-aarch64-3.6/Bio/codonalign/codonalignment.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/codonalign
copying build/lib.linux-aarch64-3.6/Bio/codonalign/codonalphabet.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/codonalign
copying build/lib.linux-aarch64-3.6/Bio/codonalign/chisq.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/codonalign
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Medline
copying build/lib.linux-aarch64-3.6/Bio/Medline/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Medline
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/BioSQL/DBUtils.py to DBUtils.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/BioSQL/Loader.py to Loader.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/BioSQL/BioSeq.py to BioSeq.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/BioSQL/__init__.py to __init__.cpython-36.pyc
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byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/codonalign/chisq.py to chisq.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Medline/__init__.py to __init__.cpython-36.pyc
writing byte-compilation script '/tmp/tmpaf63tqyn.py'
/usr/bin/python3 /tmp/tmpaf63tqyn.py
removing /tmp/tmpaf63tqyn.py
running install_egg_info
running egg_info
creating biopython.egg-info
writing biopython.egg-info/PKG-INFO
writing dependency_links to biopython.egg-info/dependency_links.txt
writing requirements to biopython.egg-info/requires.txt
writing top-level names to biopython.egg-info/top_level.txt
writing manifest file 'biopython.egg-info/SOURCES.txt'
reading manifest file 'biopython.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no previously-included files matching '*.pyc' found anywhere in distribution
warning: no previously-included files matching '*.pyo' found anywhere in distribution
warning: no previously-included files matching '*.py{}' found anywhere in distribution
warning: no previously-included files matching '*.py-e' found anywhere in distribution
writing manifest file 'biopython.egg-info/SOURCES.txt'
Copying biopython.egg-info to /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/biopython-1.70-py3.6.egg-info
running install_scripts
+ popd
~/build/BUILD/python-biopython-1.70
~/build/BUILD/python-biopython-1.70/python2 ~/build/BUILD/python-biopython-1.70
+ pushd python2
+ /usr/bin/python2 setup.py install -O1 --skip-build --root=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64 --install-data=/usr/share/python-biopython
running install
running install_lib
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/BioSQL
copying build/lib.linux-aarch64-2.7/BioSQL/DBUtils.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/BioSQL
copying build/lib.linux-aarch64-2.7/BioSQL/Loader.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/BioSQL
copying build/lib.linux-aarch64-2.7/BioSQL/BioSeq.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/BioSQL
copying build/lib.linux-aarch64-2.7/BioSQL/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/BioSQL
copying build/lib.linux-aarch64-2.7/BioSQL/BioSeqDatabase.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/BioSQL
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Phylo
copying build/lib.linux-aarch64-2.7/Bio/Phylo/NewickIO.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Phylo
copying build/lib.linux-aarch64-2.7/Bio/Phylo/_io.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Phylo
copying build/lib.linux-aarch64-2.7/Bio/Phylo/_utils.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Phylo
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Phylo/Applications
copying build/lib.linux-aarch64-2.7/Bio/Phylo/Applications/_Phyml.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Phylo/Applications
copying build/lib.linux-aarch64-2.7/Bio/Phylo/Applications/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Phylo/Applications
copying build/lib.linux-aarch64-2.7/Bio/Phylo/Applications/_Raxml.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Phylo/Applications
copying build/lib.linux-aarch64-2.7/Bio/Phylo/Applications/_Fasttree.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Phylo/Applications
copying build/lib.linux-aarch64-2.7/Bio/Phylo/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Phylo
copying build/lib.linux-aarch64-2.7/Bio/Phylo/PhyloXML.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Phylo
copying build/lib.linux-aarch64-2.7/Bio/Phylo/_cdao_owl.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Phylo
copying build/lib.linux-aarch64-2.7/Bio/Phylo/Newick.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Phylo
copying build/lib.linux-aarch64-2.7/Bio/Phylo/Consensus.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Phylo
copying build/lib.linux-aarch64-2.7/Bio/Phylo/TreeConstruction.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Phylo
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Phylo/PAML
copying build/lib.linux-aarch64-2.7/Bio/Phylo/PAML/_parse_yn00.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Phylo/PAML
copying build/lib.linux-aarch64-2.7/Bio/Phylo/PAML/_paml.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Phylo/PAML
copying build/lib.linux-aarch64-2.7/Bio/Phylo/PAML/_parse_codeml.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Phylo/PAML
copying build/lib.linux-aarch64-2.7/Bio/Phylo/PAML/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Phylo/PAML
copying build/lib.linux-aarch64-2.7/Bio/Phylo/PAML/_parse_baseml.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Phylo/PAML
copying build/lib.linux-aarch64-2.7/Bio/Phylo/PAML/chi2.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Phylo/PAML
copying build/lib.linux-aarch64-2.7/Bio/Phylo/PAML/codeml.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Phylo/PAML
copying build/lib.linux-aarch64-2.7/Bio/Phylo/PAML/baseml.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Phylo/PAML
copying build/lib.linux-aarch64-2.7/Bio/Phylo/PAML/yn00.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Phylo/PAML
copying build/lib.linux-aarch64-2.7/Bio/Phylo/NexusIO.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Phylo
copying build/lib.linux-aarch64-2.7/Bio/Phylo/BaseTree.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Phylo
copying build/lib.linux-aarch64-2.7/Bio/Phylo/NeXML.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Phylo
copying build/lib.linux-aarch64-2.7/Bio/Phylo/CDAO.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Phylo
copying build/lib.linux-aarch64-2.7/Bio/Phylo/CDAOIO.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Phylo
copying build/lib.linux-aarch64-2.7/Bio/Phylo/NeXMLIO.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Phylo
copying build/lib.linux-aarch64-2.7/Bio/Phylo/PhyloXMLIO.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Phylo
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez
copying build/lib.linux-aarch64-2.7/Bio/Entrez/Parser.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez
copying build/lib.linux-aarch64-2.7/Bio/Entrez/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/elink_020122.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/OMSSA.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/PDB_General.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/HomoloGene.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/math.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/pubmed_140101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/isomopf.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/eSearch_020511.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/EMBL_General.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_Mime.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/MMDB_Features.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/isomscr.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/list.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/GenBank_General.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/htmltable.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/GenBank_General.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NSE.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/xmlspecchars.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/eLink_090910.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/link.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/bookdoc_100301.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/isotech.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/mathml2-qname-1.mod -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/isocyr2.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/pubmed_130501.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/MMDB.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_Protein.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/XHTMLtablesetup.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/display.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/nlmmedline_080101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/archivearticle.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/pmc-1.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_Variation.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/references.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/journalmeta.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/modules.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/mathmlsetup.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/ePost_020511.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/isodia.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/nlmcommon_090101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/isobox.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/nlmmedline_011101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_Gene.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/Docsum_3_0.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/eSummary_041029.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/articlemeta.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/bookdoc_130101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_TxInit.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/OMSSA.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/archivecustom-models.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/isogrk3.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_BioSource.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/isomfrk.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_Pub.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/EMBL_General.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/pubmed_100101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/pubmed_150101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/bookdoc_140101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/para.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/isopub.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/PRF_General.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/pubmed_130101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/isogrk4.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/isolat1.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_TSeq.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/isoamsc.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/archivecustom-mixes.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/pubmed_080101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/isoamsn.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/format.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/eSpell.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/pubmed_020114.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_all.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/MMDB.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_Remap.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/esearch.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/taxon.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/esummary-v1.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_Rsite.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_Submit.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/bookdoc_120101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_General.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NSE.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_General.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/PRF_General.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/isoamsa.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_BioTree.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/eInfo_020511.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_Biblio.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/isoamsb.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_Access.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/section.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_Cdd.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/isogrk2.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/phrase.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/bookdoc_110101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/default-mixes.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/nlmserials_100101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/SP_General.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/egquery.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_Medlars.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_Organism.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_PubMed.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/isonum.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/isogrk1.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/isolat2.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_Seqset.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/archivecustom-modules.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/mmlextra.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/isoamsr.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/common.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/mmlalias.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/einfo.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/pubmed_100301.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/chars.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/mathml2.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/PIR_General.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/nlmserials_080101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/SP_General.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/eLink_101123.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/Docsum_3_2.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/default-classes.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_Sequence.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_Mim.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_RNA.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/pubmed_120101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/PIR_General.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_Seqres.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/PDB_General.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/Docsum_3_3.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/backmatter.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/nlmcommon_080101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/archivecustom-classes.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/bookdoc_150101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/notat.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/nlmmedline_090101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/nlmcommon_011101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/Docsum_3_4.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/HomoloGene.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_Medline.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_Systems.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/Docsum_3_1.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/isoamso.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/pubmed_090101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_Blast4.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/pubmed_110101.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/isocyr1.ent -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
copying build/lib.linux-aarch64-2.7/Bio/Entrez/DTDs/NCBI_Project.dtd -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/DTDs
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/UniProt
copying build/lib.linux-aarch64-2.7/Bio/UniProt/GOA.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/UniProt
copying build/lib.linux-aarch64-2.7/Bio/UniProt/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/UniProt
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Pathway
copying build/lib.linux-aarch64-2.7/Bio/Pathway/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Pathway
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Pathway/Rep
copying build/lib.linux-aarch64-2.7/Bio/Pathway/Rep/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Pathway/Rep
copying build/lib.linux-aarch64-2.7/Bio/Pathway/Rep/Graph.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Pathway/Rep
copying build/lib.linux-aarch64-2.7/Bio/Pathway/Rep/MultiGraph.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Pathway/Rep
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/ExPASy
copying build/lib.linux-aarch64-2.7/Bio/ExPASy/cellosaurus.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/ExPASy
copying build/lib.linux-aarch64-2.7/Bio/ExPASy/Prosite.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/ExPASy
copying build/lib.linux-aarch64-2.7/Bio/ExPASy/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/ExPASy
copying build/lib.linux-aarch64-2.7/Bio/ExPASy/Prodoc.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/ExPASy
copying build/lib.linux-aarch64-2.7/Bio/ExPASy/Enzyme.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/ExPASy
copying build/lib.linux-aarch64-2.7/Bio/ExPASy/ScanProsite.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/ExPASy
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SCOP
copying build/lib.linux-aarch64-2.7/Bio/SCOP/Raf.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SCOP
copying build/lib.linux-aarch64-2.7/Bio/SCOP/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SCOP
copying build/lib.linux-aarch64-2.7/Bio/SCOP/Hie.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SCOP
copying build/lib.linux-aarch64-2.7/Bio/SCOP/Des.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SCOP
copying build/lib.linux-aarch64-2.7/Bio/SCOP/Residues.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SCOP
copying build/lib.linux-aarch64-2.7/Bio/SCOP/Cla.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SCOP
copying build/lib.linux-aarch64-2.7/Bio/SCOP/Dom.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SCOP
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Restriction
copying build/lib.linux-aarch64-2.7/Bio/Restriction/Restriction_Dictionary.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Restriction
copying build/lib.linux-aarch64-2.7/Bio/Restriction/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Restriction
copying build/lib.linux-aarch64-2.7/Bio/Restriction/RanaConfig.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Restriction
copying build/lib.linux-aarch64-2.7/Bio/Restriction/PrintFormat.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Restriction
copying build/lib.linux-aarch64-2.7/Bio/Restriction/Restriction.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Restriction
copying build/lib.linux-aarch64-2.7/Bio/triefind.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Wise
copying build/lib.linux-aarch64-2.7/Bio/Wise/psw.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Wise
copying build/lib.linux-aarch64-2.7/Bio/Wise/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Wise
copying build/lib.linux-aarch64-2.7/Bio/Wise/dnal.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Wise
copying build/lib.linux-aarch64-2.7/Bio/File.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SearchIO
copying build/lib.linux-aarch64-2.7/Bio/SearchIO/BlatIO.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SearchIO
copying build/lib.linux-aarch64-2.7/Bio/SearchIO/_utils.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SearchIO
copying build/lib.linux-aarch64-2.7/Bio/SearchIO/FastaIO.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SearchIO
copying build/lib.linux-aarch64-2.7/Bio/SearchIO/_index.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SearchIO
copying build/lib.linux-aarch64-2.7/Bio/SearchIO/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SearchIO
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SearchIO/HmmerIO
copying build/lib.linux-aarch64-2.7/Bio/SearchIO/HmmerIO/hmmer3_text.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SearchIO/HmmerIO
copying build/lib.linux-aarch64-2.7/Bio/SearchIO/HmmerIO/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SearchIO/HmmerIO
copying build/lib.linux-aarch64-2.7/Bio/SearchIO/HmmerIO/hmmer2_text.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SearchIO/HmmerIO
copying build/lib.linux-aarch64-2.7/Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SearchIO/HmmerIO
copying build/lib.linux-aarch64-2.7/Bio/SearchIO/HmmerIO/_base.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SearchIO/HmmerIO
copying build/lib.linux-aarch64-2.7/Bio/SearchIO/HmmerIO/hmmer3_tab.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SearchIO/HmmerIO
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SearchIO/BlastIO
copying build/lib.linux-aarch64-2.7/Bio/SearchIO/BlastIO/blast_text.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SearchIO/BlastIO
copying build/lib.linux-aarch64-2.7/Bio/SearchIO/BlastIO/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SearchIO/BlastIO
copying build/lib.linux-aarch64-2.7/Bio/SearchIO/BlastIO/blast_xml.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SearchIO/BlastIO
copying build/lib.linux-aarch64-2.7/Bio/SearchIO/BlastIO/blast_tab.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SearchIO/BlastIO
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SearchIO/_model
copying build/lib.linux-aarch64-2.7/Bio/SearchIO/_model/hit.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SearchIO/_model
copying build/lib.linux-aarch64-2.7/Bio/SearchIO/_model/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SearchIO/_model
copying build/lib.linux-aarch64-2.7/Bio/SearchIO/_model/hsp.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SearchIO/_model
copying build/lib.linux-aarch64-2.7/Bio/SearchIO/_model/_base.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SearchIO/_model
copying build/lib.linux-aarch64-2.7/Bio/SearchIO/_model/query.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SearchIO/_model
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SearchIO/ExonerateIO
copying build/lib.linux-aarch64-2.7/Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SearchIO/ExonerateIO
copying build/lib.linux-aarch64-2.7/Bio/SearchIO/ExonerateIO/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SearchIO/ExonerateIO
copying build/lib.linux-aarch64-2.7/Bio/SearchIO/ExonerateIO/exonerate_text.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SearchIO/ExonerateIO
copying build/lib.linux-aarch64-2.7/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SearchIO/ExonerateIO
copying build/lib.linux-aarch64-2.7/Bio/SearchIO/ExonerateIO/_base.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SearchIO/ExonerateIO
copying build/lib.linux-aarch64-2.7/Bio/Seq.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/AlignIO
copying build/lib.linux-aarch64-2.7/Bio/AlignIO/FastaIO.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/AlignIO
copying build/lib.linux-aarch64-2.7/Bio/AlignIO/MauveIO.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/AlignIO
copying build/lib.linux-aarch64-2.7/Bio/AlignIO/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/AlignIO
copying build/lib.linux-aarch64-2.7/Bio/AlignIO/StockholmIO.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/AlignIO
copying build/lib.linux-aarch64-2.7/Bio/AlignIO/PhylipIO.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/AlignIO
copying build/lib.linux-aarch64-2.7/Bio/AlignIO/MafIO.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/AlignIO
copying build/lib.linux-aarch64-2.7/Bio/AlignIO/EmbossIO.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/AlignIO
copying build/lib.linux-aarch64-2.7/Bio/AlignIO/NexusIO.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/AlignIO
copying build/lib.linux-aarch64-2.7/Bio/AlignIO/Interfaces.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/AlignIO
copying build/lib.linux-aarch64-2.7/Bio/AlignIO/ClustalIO.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/AlignIO
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Blast
copying build/lib.linux-aarch64-2.7/Bio/Blast/Applications.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Blast
copying build/lib.linux-aarch64-2.7/Bio/Blast/NCBIWWW.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Blast
copying build/lib.linux-aarch64-2.7/Bio/Blast/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Blast
copying build/lib.linux-aarch64-2.7/Bio/Blast/NCBIXML.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Blast
copying build/lib.linux-aarch64-2.7/Bio/Blast/Record.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Blast
copying build/lib.linux-aarch64-2.7/Bio/Blast/NCBIStandalone.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Blast
copying build/lib.linux-aarch64-2.7/Bio/Blast/ParseBlastTable.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Blast
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Geo
copying build/lib.linux-aarch64-2.7/Bio/Geo/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Geo
copying build/lib.linux-aarch64-2.7/Bio/Geo/Record.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Geo
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/phenotype
copying build/lib.linux-aarch64-2.7/Bio/phenotype/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/phenotype
copying build/lib.linux-aarch64-2.7/Bio/phenotype/pm_fitting.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/phenotype
copying build/lib.linux-aarch64-2.7/Bio/phenotype/phen_micro.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/phenotype
copying build/lib.linux-aarch64-2.7/Bio/_utils.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/NeuralNetwork
copying build/lib.linux-aarch64-2.7/Bio/NeuralNetwork/StopTraining.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/NeuralNetwork
copying build/lib.linux-aarch64-2.7/Bio/NeuralNetwork/Training.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/NeuralNetwork
copying build/lib.linux-aarch64-2.7/Bio/NeuralNetwork/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/NeuralNetwork
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/NeuralNetwork/BackPropagation
copying build/lib.linux-aarch64-2.7/Bio/NeuralNetwork/BackPropagation/Layer.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/NeuralNetwork/BackPropagation
copying build/lib.linux-aarch64-2.7/Bio/NeuralNetwork/BackPropagation/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/NeuralNetwork/BackPropagation
copying build/lib.linux-aarch64-2.7/Bio/NeuralNetwork/BackPropagation/Network.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/NeuralNetwork/BackPropagation
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/NeuralNetwork/Gene
copying build/lib.linux-aarch64-2.7/Bio/NeuralNetwork/Gene/Pattern.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/NeuralNetwork/Gene
copying build/lib.linux-aarch64-2.7/Bio/NeuralNetwork/Gene/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/NeuralNetwork/Gene
copying build/lib.linux-aarch64-2.7/Bio/NeuralNetwork/Gene/Schema.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/NeuralNetwork/Gene
copying build/lib.linux-aarch64-2.7/Bio/NeuralNetwork/Gene/Signature.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/NeuralNetwork/Gene
copying build/lib.linux-aarch64-2.7/Bio/NeuralNetwork/Gene/Motif.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/NeuralNetwork/Gene
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PopGen
copying build/lib.linux-aarch64-2.7/Bio/PopGen/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PopGen
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PopGen/GenePop
copying build/lib.linux-aarch64-2.7/Bio/PopGen/GenePop/Controller.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PopGen/GenePop
copying build/lib.linux-aarch64-2.7/Bio/PopGen/GenePop/EasyController.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PopGen/GenePop
copying build/lib.linux-aarch64-2.7/Bio/PopGen/GenePop/Utils.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PopGen/GenePop
copying build/lib.linux-aarch64-2.7/Bio/PopGen/GenePop/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PopGen/GenePop
copying build/lib.linux-aarch64-2.7/Bio/PopGen/GenePop/LargeFileParser.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PopGen/GenePop
copying build/lib.linux-aarch64-2.7/Bio/PopGen/GenePop/FileParser.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PopGen/GenePop
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Crystal
copying build/lib.linux-aarch64-2.7/Bio/Crystal/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Crystal
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/GA
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/GA/Mutation
copying build/lib.linux-aarch64-2.7/Bio/GA/Mutation/General.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/GA/Mutation
copying build/lib.linux-aarch64-2.7/Bio/GA/Mutation/Simple.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/GA/Mutation
copying build/lib.linux-aarch64-2.7/Bio/GA/Mutation/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/GA/Mutation
copying build/lib.linux-aarch64-2.7/Bio/GA/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/GA
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/GA/Crossover
copying build/lib.linux-aarch64-2.7/Bio/GA/Crossover/Uniform.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/GA/Crossover
copying build/lib.linux-aarch64-2.7/Bio/GA/Crossover/General.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/GA/Crossover
copying build/lib.linux-aarch64-2.7/Bio/GA/Crossover/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/GA/Crossover
copying build/lib.linux-aarch64-2.7/Bio/GA/Crossover/GeneralPoint.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/GA/Crossover
copying build/lib.linux-aarch64-2.7/Bio/GA/Crossover/Point.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/GA/Crossover
copying build/lib.linux-aarch64-2.7/Bio/GA/Crossover/TwoPoint.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/GA/Crossover
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/GA/Selection
copying build/lib.linux-aarch64-2.7/Bio/GA/Selection/Diversity.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/GA/Selection
copying build/lib.linux-aarch64-2.7/Bio/GA/Selection/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/GA/Selection
copying build/lib.linux-aarch64-2.7/Bio/GA/Selection/RouletteWheel.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/GA/Selection
copying build/lib.linux-aarch64-2.7/Bio/GA/Selection/Tournament.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/GA/Selection
copying build/lib.linux-aarch64-2.7/Bio/GA/Selection/Abstract.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/GA/Selection
copying build/lib.linux-aarch64-2.7/Bio/GA/Organism.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/GA
copying build/lib.linux-aarch64-2.7/Bio/GA/Evolver.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/GA
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/GA/Repair
copying build/lib.linux-aarch64-2.7/Bio/GA/Repair/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/GA/Repair
copying build/lib.linux-aarch64-2.7/Bio/GA/Repair/Stabilizing.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/GA/Repair
copying build/lib.linux-aarch64-2.7/Bio/kNN.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio
copying build/lib.linux-aarch64-2.7/Bio/SeqRecord.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/motifs
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/motifs/applications
copying build/lib.linux-aarch64-2.7/Bio/motifs/applications/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/motifs/applications
copying build/lib.linux-aarch64-2.7/Bio/motifs/applications/_xxmotif.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/motifs/applications
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/motifs/jaspar
copying build/lib.linux-aarch64-2.7/Bio/motifs/jaspar/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/motifs/jaspar
copying build/lib.linux-aarch64-2.7/Bio/motifs/jaspar/db.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/motifs/jaspar
copying build/lib.linux-aarch64-2.7/Bio/motifs/_pwm.so -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/motifs
copying build/lib.linux-aarch64-2.7/Bio/motifs/thresholds.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/motifs
copying build/lib.linux-aarch64-2.7/Bio/motifs/matrix.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/motifs
copying build/lib.linux-aarch64-2.7/Bio/motifs/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/motifs
copying build/lib.linux-aarch64-2.7/Bio/motifs/meme.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/motifs
copying build/lib.linux-aarch64-2.7/Bio/motifs/transfac.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/motifs
copying build/lib.linux-aarch64-2.7/Bio/motifs/alignace.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/motifs
copying build/lib.linux-aarch64-2.7/Bio/motifs/mast.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/motifs
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Application
copying build/lib.linux-aarch64-2.7/Bio/Application/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Application
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/KDTree
copying build/lib.linux-aarch64-2.7/Bio/KDTree/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/KDTree
copying build/lib.linux-aarch64-2.7/Bio/KDTree/KDTree.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/KDTree
copying build/lib.linux-aarch64-2.7/Bio/KDTree/_CKDTree.so -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/KDTree
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/_py3k
copying build/lib.linux-aarch64-2.7/Bio/_py3k/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/_py3k
copying build/lib.linux-aarch64-2.7/Bio/ParserSupport.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio
copying build/lib.linux-aarch64-2.7/Bio/SeqFeature.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio
copying build/lib.linux-aarch64-2.7/Bio/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SeqIO
copying build/lib.linux-aarch64-2.7/Bio/SeqIO/PdbIO.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SeqIO
copying build/lib.linux-aarch64-2.7/Bio/SeqIO/SwissIO.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SeqIO
copying build/lib.linux-aarch64-2.7/Bio/SeqIO/_convert.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SeqIO
copying build/lib.linux-aarch64-2.7/Bio/SeqIO/FastaIO.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SeqIO
copying build/lib.linux-aarch64-2.7/Bio/SeqIO/InsdcIO.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SeqIO
copying build/lib.linux-aarch64-2.7/Bio/SeqIO/AceIO.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SeqIO
copying build/lib.linux-aarch64-2.7/Bio/SeqIO/_index.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SeqIO
copying build/lib.linux-aarch64-2.7/Bio/SeqIO/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SeqIO
copying build/lib.linux-aarch64-2.7/Bio/SeqIO/IgIO.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SeqIO
copying build/lib.linux-aarch64-2.7/Bio/SeqIO/UniprotIO.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SeqIO
copying build/lib.linux-aarch64-2.7/Bio/SeqIO/TabIO.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SeqIO
copying build/lib.linux-aarch64-2.7/Bio/SeqIO/PhdIO.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SeqIO
copying build/lib.linux-aarch64-2.7/Bio/SeqIO/SffIO.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SeqIO
copying build/lib.linux-aarch64-2.7/Bio/SeqIO/QualityIO.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SeqIO
copying build/lib.linux-aarch64-2.7/Bio/SeqIO/SeqXmlIO.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SeqIO
copying build/lib.linux-aarch64-2.7/Bio/SeqIO/AbiIO.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SeqIO
copying build/lib.linux-aarch64-2.7/Bio/SeqIO/Interfaces.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SeqIO
copying build/lib.linux-aarch64-2.7/Bio/SeqIO/PirIO.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SeqIO
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Statistics
copying build/lib.linux-aarch64-2.7/Bio/Statistics/lowess.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Statistics
copying build/lib.linux-aarch64-2.7/Bio/Statistics/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Statistics
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Graphics
copying build/lib.linux-aarch64-2.7/Bio/Graphics/ColorSpiral.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Graphics
copying build/lib.linux-aarch64-2.7/Bio/Graphics/BasicChromosome.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Graphics
copying build/lib.linux-aarch64-2.7/Bio/Graphics/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Graphics
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Graphics/GenomeDiagram
copying build/lib.linux-aarch64-2.7/Bio/Graphics/GenomeDiagram/_Diagram.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Graphics/GenomeDiagram
copying build/lib.linux-aarch64-2.7/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Graphics/GenomeDiagram
copying build/lib.linux-aarch64-2.7/Bio/Graphics/GenomeDiagram/_CrossLink.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Graphics/GenomeDiagram
copying build/lib.linux-aarch64-2.7/Bio/Graphics/GenomeDiagram/_Colors.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Graphics/GenomeDiagram
copying build/lib.linux-aarch64-2.7/Bio/Graphics/GenomeDiagram/_GraphSet.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Graphics/GenomeDiagram
copying build/lib.linux-aarch64-2.7/Bio/Graphics/GenomeDiagram/_Track.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Graphics/GenomeDiagram
copying build/lib.linux-aarch64-2.7/Bio/Graphics/GenomeDiagram/_Feature.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Graphics/GenomeDiagram
copying build/lib.linux-aarch64-2.7/Bio/Graphics/GenomeDiagram/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Graphics/GenomeDiagram
copying build/lib.linux-aarch64-2.7/Bio/Graphics/GenomeDiagram/_FeatureSet.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Graphics/GenomeDiagram
copying build/lib.linux-aarch64-2.7/Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Graphics/GenomeDiagram
copying build/lib.linux-aarch64-2.7/Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Graphics/GenomeDiagram
copying build/lib.linux-aarch64-2.7/Bio/Graphics/GenomeDiagram/_Graph.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Graphics/GenomeDiagram
copying build/lib.linux-aarch64-2.7/Bio/Graphics/KGML_vis.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Graphics
copying build/lib.linux-aarch64-2.7/Bio/Graphics/Comparative.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Graphics
copying build/lib.linux-aarch64-2.7/Bio/Graphics/Distribution.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Graphics
copying build/lib.linux-aarch64-2.7/Bio/Graphics/DisplayRepresentation.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Graphics
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/GenBank
copying build/lib.linux-aarch64-2.7/Bio/GenBank/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/GenBank
copying build/lib.linux-aarch64-2.7/Bio/GenBank/utils.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/GenBank
copying build/lib.linux-aarch64-2.7/Bio/GenBank/Record.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/GenBank
copying build/lib.linux-aarch64-2.7/Bio/GenBank/Scanner.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/GenBank
copying build/lib.linux-aarch64-2.7/Bio/Index.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SwissProt
copying build/lib.linux-aarch64-2.7/Bio/SwissProt/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SwissProt
copying build/lib.linux-aarch64-2.7/Bio/SwissProt/KeyWList.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SwissProt
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Align
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Align/Applications
copying build/lib.linux-aarch64-2.7/Bio/Align/Applications/_Prank.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Align/Applications
copying build/lib.linux-aarch64-2.7/Bio/Align/Applications/_Clustalw.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Align/Applications
copying build/lib.linux-aarch64-2.7/Bio/Align/Applications/_Probcons.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Align/Applications
copying build/lib.linux-aarch64-2.7/Bio/Align/Applications/_Dialign.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Align/Applications
copying build/lib.linux-aarch64-2.7/Bio/Align/Applications/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Align/Applications
copying build/lib.linux-aarch64-2.7/Bio/Align/Applications/_ClustalOmega.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Align/Applications
copying build/lib.linux-aarch64-2.7/Bio/Align/Applications/_TCoffee.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Align/Applications
copying build/lib.linux-aarch64-2.7/Bio/Align/Applications/_MSAProbs.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Align/Applications
copying build/lib.linux-aarch64-2.7/Bio/Align/Applications/_Muscle.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Align/Applications
copying build/lib.linux-aarch64-2.7/Bio/Align/Applications/_Mafft.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Align/Applications
copying build/lib.linux-aarch64-2.7/Bio/Align/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Align
copying build/lib.linux-aarch64-2.7/Bio/Align/AlignInfo.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Align
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/NMR
copying build/lib.linux-aarch64-2.7/Bio/NMR/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/NMR
copying build/lib.linux-aarch64-2.7/Bio/NMR/NOEtools.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/NMR
copying build/lib.linux-aarch64-2.7/Bio/NMR/xpktools.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/NMR
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/UniGene
copying build/lib.linux-aarch64-2.7/Bio/UniGene/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/UniGene
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SubsMat
copying build/lib.linux-aarch64-2.7/Bio/SubsMat/FreqTable.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SubsMat
copying build/lib.linux-aarch64-2.7/Bio/SubsMat/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SubsMat
copying build/lib.linux-aarch64-2.7/Bio/SubsMat/MatrixInfo.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SubsMat
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Nexus
copying build/lib.linux-aarch64-2.7/Bio/Nexus/Nodes.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Nexus
copying build/lib.linux-aarch64-2.7/Bio/Nexus/Trees.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Nexus
copying build/lib.linux-aarch64-2.7/Bio/Nexus/StandardData.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Nexus
copying build/lib.linux-aarch64-2.7/Bio/Nexus/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Nexus
copying build/lib.linux-aarch64-2.7/Bio/Nexus/Nexus.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Nexus
copying build/lib.linux-aarch64-2.7/Bio/Nexus/cnexus.so -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Nexus
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SVDSuperimposer
copying build/lib.linux-aarch64-2.7/Bio/SVDSuperimposer/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SVDSuperimposer
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Compass
copying build/lib.linux-aarch64-2.7/Bio/Compass/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Compass
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/FSSP
copying build/lib.linux-aarch64-2.7/Bio/FSSP/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/FSSP
copying build/lib.linux-aarch64-2.7/Bio/FSSP/FSSPTools.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/FSSP
copying build/lib.linux-aarch64-2.7/Bio/FSSP/fssp_rec.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/FSSP
copying build/lib.linux-aarch64-2.7/Bio/MaxEntropy.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Data
copying build/lib.linux-aarch64-2.7/Bio/Data/IUPACData.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Data
copying build/lib.linux-aarch64-2.7/Bio/Data/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Data
copying build/lib.linux-aarch64-2.7/Bio/Data/SCOPData.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Data
copying build/lib.linux-aarch64-2.7/Bio/Data/CodonTable.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Data
copying build/lib.linux-aarch64-2.7/Bio/pairwise2.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Alphabet
copying build/lib.linux-aarch64-2.7/Bio/Alphabet/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Alphabet
copying build/lib.linux-aarch64-2.7/Bio/Alphabet/IUPAC.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Alphabet
copying build/lib.linux-aarch64-2.7/Bio/Alphabet/Reduced.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Alphabet
copying build/lib.linux-aarch64-2.7/Bio/bgzf.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SeqUtils
copying build/lib.linux-aarch64-2.7/Bio/SeqUtils/ProtParamData.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SeqUtils
copying build/lib.linux-aarch64-2.7/Bio/SeqUtils/ProtParam.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SeqUtils
copying build/lib.linux-aarch64-2.7/Bio/SeqUtils/CodonUsageIndices.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SeqUtils
copying build/lib.linux-aarch64-2.7/Bio/SeqUtils/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SeqUtils
copying build/lib.linux-aarch64-2.7/Bio/SeqUtils/lcc.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SeqUtils
copying build/lib.linux-aarch64-2.7/Bio/SeqUtils/CodonUsage.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SeqUtils
copying build/lib.linux-aarch64-2.7/Bio/SeqUtils/CheckSum.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SeqUtils
copying build/lib.linux-aarch64-2.7/Bio/SeqUtils/IsoelectricPoint.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SeqUtils
copying build/lib.linux-aarch64-2.7/Bio/SeqUtils/MeltingTemp.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/SeqUtils
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Emboss
copying build/lib.linux-aarch64-2.7/Bio/Emboss/Applications.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Emboss
copying build/lib.linux-aarch64-2.7/Bio/Emboss/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Emboss
copying build/lib.linux-aarch64-2.7/Bio/Emboss/PrimerSearch.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Emboss
copying build/lib.linux-aarch64-2.7/Bio/Emboss/Primer3.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Emboss
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Cluster
copying build/lib.linux-aarch64-2.7/Bio/Cluster/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Cluster
copying build/lib.linux-aarch64-2.7/Bio/Cluster/cluster.so -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Cluster
copying build/lib.linux-aarch64-2.7/Bio/MarkovModel.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/TogoWS
copying build/lib.linux-aarch64-2.7/Bio/TogoWS/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/TogoWS
copying build/lib.linux-aarch64-2.7/Bio/cpairwise2.so -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/CAPS
copying build/lib.linux-aarch64-2.7/Bio/CAPS/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/CAPS
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Sequencing
copying build/lib.linux-aarch64-2.7/Bio/Sequencing/Ace.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Sequencing
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Sequencing/Applications
copying build/lib.linux-aarch64-2.7/Bio/Sequencing/Applications/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Sequencing/Applications
copying build/lib.linux-aarch64-2.7/Bio/Sequencing/Applications/_bwa.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Sequencing/Applications
copying build/lib.linux-aarch64-2.7/Bio/Sequencing/Applications/_samtools.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Sequencing/Applications
copying build/lib.linux-aarch64-2.7/Bio/Sequencing/Applications/_Novoalign.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Sequencing/Applications
copying build/lib.linux-aarch64-2.7/Bio/Sequencing/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Sequencing
copying build/lib.linux-aarch64-2.7/Bio/Sequencing/Phd.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Sequencing
copying build/lib.linux-aarch64-2.7/Bio/NaiveBayes.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio
copying build/lib.linux-aarch64-2.7/Bio/LogisticRegression.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PDB
copying build/lib.linux-aarch64-2.7/Bio/PDB/HSExposure.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PDB
copying build/lib.linux-aarch64-2.7/Bio/PDB/Model.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PDB
copying build/lib.linux-aarch64-2.7/Bio/PDB/Vector.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PDB
copying build/lib.linux-aarch64-2.7/Bio/PDB/Residue.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PDB
copying build/lib.linux-aarch64-2.7/Bio/PDB/PDBExceptions.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PDB
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PDB/QCPSuperimposer
copying build/lib.linux-aarch64-2.7/Bio/PDB/QCPSuperimposer/qcprotmodule.so -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PDB/QCPSuperimposer
copying build/lib.linux-aarch64-2.7/Bio/PDB/QCPSuperimposer/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PDB/QCPSuperimposer
copying build/lib.linux-aarch64-2.7/Bio/PDB/PSEA.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PDB
copying build/lib.linux-aarch64-2.7/Bio/PDB/StructureAlignment.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PDB
copying build/lib.linux-aarch64-2.7/Bio/PDB/Atom.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PDB
copying build/lib.linux-aarch64-2.7/Bio/PDB/Superimposer.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PDB
copying build/lib.linux-aarch64-2.7/Bio/PDB/DSSP.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PDB
copying build/lib.linux-aarch64-2.7/Bio/PDB/Selection.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PDB
copying build/lib.linux-aarch64-2.7/Bio/PDB/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PDB
copying build/lib.linux-aarch64-2.7/Bio/PDB/StructureBuilder.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PDB
copying build/lib.linux-aarch64-2.7/Bio/PDB/Polypeptide.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PDB
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PDB/mmtf
copying build/lib.linux-aarch64-2.7/Bio/PDB/mmtf/DefaultParser.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PDB/mmtf
copying build/lib.linux-aarch64-2.7/Bio/PDB/mmtf/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PDB/mmtf
copying build/lib.linux-aarch64-2.7/Bio/PDB/FragmentMapper.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PDB
copying build/lib.linux-aarch64-2.7/Bio/PDB/AbstractPropertyMap.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PDB
copying build/lib.linux-aarch64-2.7/Bio/PDB/Structure.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PDB
copying build/lib.linux-aarch64-2.7/Bio/PDB/NeighborSearch.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PDB
copying build/lib.linux-aarch64-2.7/Bio/PDB/ResidueDepth.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PDB
copying build/lib.linux-aarch64-2.7/Bio/PDB/PDBIO.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PDB
copying build/lib.linux-aarch64-2.7/Bio/PDB/PDBParser.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PDB
copying build/lib.linux-aarch64-2.7/Bio/PDB/PDBList.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PDB
copying build/lib.linux-aarch64-2.7/Bio/PDB/Entity.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PDB
copying build/lib.linux-aarch64-2.7/Bio/PDB/parse_pdb_header.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PDB
copying build/lib.linux-aarch64-2.7/Bio/PDB/MMCIF2Dict.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PDB
copying build/lib.linux-aarch64-2.7/Bio/PDB/MMCIFParser.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PDB
copying build/lib.linux-aarch64-2.7/Bio/PDB/Dice.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PDB
copying build/lib.linux-aarch64-2.7/Bio/PDB/NACCESS.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PDB
copying build/lib.linux-aarch64-2.7/Bio/PDB/Chain.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PDB
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/KEGG
copying build/lib.linux-aarch64-2.7/Bio/KEGG/REST.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/KEGG
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/KEGG/Compound
copying build/lib.linux-aarch64-2.7/Bio/KEGG/Compound/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/KEGG/Compound
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/KEGG/Map
copying build/lib.linux-aarch64-2.7/Bio/KEGG/Map/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/KEGG/Map
copying build/lib.linux-aarch64-2.7/Bio/KEGG/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/KEGG
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/KEGG/KGML
copying build/lib.linux-aarch64-2.7/Bio/KEGG/KGML/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/KEGG/KGML
copying build/lib.linux-aarch64-2.7/Bio/KEGG/KGML/KGML_parser.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/KEGG/KGML
copying build/lib.linux-aarch64-2.7/Bio/KEGG/KGML/KGML_pathway.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/KEGG/KGML
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/KEGG/Enzyme
copying build/lib.linux-aarch64-2.7/Bio/KEGG/Enzyme/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/KEGG/Enzyme
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/HMM
copying build/lib.linux-aarch64-2.7/Bio/HMM/Trainer.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/HMM
copying build/lib.linux-aarch64-2.7/Bio/HMM/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/HMM
copying build/lib.linux-aarch64-2.7/Bio/HMM/Utilities.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/HMM
copying build/lib.linux-aarch64-2.7/Bio/HMM/MarkovModel.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/HMM
copying build/lib.linux-aarch64-2.7/Bio/HMM/DynamicProgramming.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/HMM
copying build/lib.linux-aarch64-2.7/Bio/trie.so -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio
copying build/lib.linux-aarch64-2.7/Bio/DocSQL.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Affy
copying build/lib.linux-aarch64-2.7/Bio/Affy/CelFile.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Affy
copying build/lib.linux-aarch64-2.7/Bio/Affy/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Affy
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/codonalign
copying build/lib.linux-aarch64-2.7/Bio/codonalign/codonseq.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/codonalign
copying build/lib.linux-aarch64-2.7/Bio/codonalign/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/codonalign
copying build/lib.linux-aarch64-2.7/Bio/codonalign/codonalignment.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/codonalign
copying build/lib.linux-aarch64-2.7/Bio/codonalign/codonalphabet.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/codonalign
copying build/lib.linux-aarch64-2.7/Bio/codonalign/chisq.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/codonalign
creating /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Medline
copying build/lib.linux-aarch64-2.7/Bio/Medline/__init__.py -> /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Medline
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/BioSQL/DBUtils.py to DBUtils.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/BioSQL/Loader.py to Loader.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/BioSQL/BioSeq.py to BioSeq.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/BioSQL/__init__.py to __init__.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/BioSQL/BioSeqDatabase.py to BioSeqDatabase.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Phylo/NewickIO.py to NewickIO.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Phylo/_io.py to _io.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Phylo/_utils.py to _utils.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Phylo/Applications/_Phyml.py to _Phyml.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Phylo/Applications/__init__.py to __init__.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Phylo/Applications/_Raxml.py to _Raxml.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Phylo/Applications/_Fasttree.py to _Fasttree.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Phylo/__init__.py to __init__.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Phylo/PhyloXML.py to PhyloXML.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Phylo/_cdao_owl.py to _cdao_owl.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Phylo/Newick.py to Newick.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Phylo/Consensus.py to Consensus.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Phylo/TreeConstruction.py to TreeConstruction.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Phylo/PAML/_parse_yn00.py to _parse_yn00.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Phylo/PAML/_paml.py to _paml.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Phylo/PAML/_parse_codeml.py to _parse_codeml.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Phylo/PAML/__init__.py to __init__.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Phylo/PAML/_parse_baseml.py to _parse_baseml.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Phylo/PAML/chi2.py to chi2.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Phylo/PAML/codeml.py to codeml.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Phylo/PAML/baseml.py to baseml.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Phylo/PAML/yn00.py to yn00.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Phylo/NexusIO.py to NexusIO.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Phylo/BaseTree.py to BaseTree.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Phylo/NeXML.py to NeXML.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Phylo/CDAO.py to CDAO.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Phylo/CDAOIO.py to CDAOIO.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Phylo/NeXMLIO.py to NeXMLIO.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Phylo/PhyloXMLIO.py to PhyloXMLIO.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/Parser.py to Parser.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Entrez/__init__.py to __init__.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/UniProt/GOA.py to GOA.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/UniProt/__init__.py to __init__.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Pathway/__init__.py to __init__.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Pathway/Rep/__init__.py to __init__.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Pathway/Rep/Graph.py to Graph.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Pathway/Rep/MultiGraph.py to MultiGraph.pyc
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byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/NaiveBayes.py to NaiveBayes.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/LogisticRegression.py to LogisticRegression.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PDB/HSExposure.py to HSExposure.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PDB/Model.py to Model.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PDB/Vector.py to Vector.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PDB/Residue.py to Residue.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PDB/PDBExceptions.py to PDBExceptions.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PDB/QCPSuperimposer/__init__.py to __init__.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PDB/PSEA.py to PSEA.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PDB/StructureAlignment.py to StructureAlignment.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PDB/Atom.py to Atom.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PDB/Superimposer.py to Superimposer.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PDB/DSSP.py to DSSP.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PDB/Selection.py to Selection.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PDB/__init__.py to __init__.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PDB/StructureBuilder.py to StructureBuilder.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PDB/Polypeptide.py to Polypeptide.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PDB/mmtf/DefaultParser.py to DefaultParser.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PDB/mmtf/__init__.py to __init__.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PDB/FragmentMapper.py to FragmentMapper.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PDB/AbstractPropertyMap.py to AbstractPropertyMap.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PDB/Structure.py to Structure.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PDB/NeighborSearch.py to NeighborSearch.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PDB/ResidueDepth.py to ResidueDepth.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PDB/PDBIO.py to PDBIO.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PDB/PDBParser.py to PDBParser.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PDB/PDBList.py to PDBList.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PDB/Entity.py to Entity.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PDB/parse_pdb_header.py to parse_pdb_header.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PDB/MMCIF2Dict.py to MMCIF2Dict.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PDB/MMCIFParser.py to MMCIFParser.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PDB/Dice.py to Dice.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PDB/NACCESS.py to NACCESS.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PDB/Chain.py to Chain.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/KEGG/REST.py to REST.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/KEGG/Compound/__init__.py to __init__.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/KEGG/Map/__init__.py to __init__.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/KEGG/__init__.py to __init__.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/KEGG/KGML/__init__.py to __init__.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/KEGG/KGML/KGML_parser.py to KGML_parser.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/KEGG/KGML/KGML_pathway.py to KGML_pathway.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/KEGG/Enzyme/__init__.py to __init__.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/HMM/Trainer.py to Trainer.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/HMM/__init__.py to __init__.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/HMM/Utilities.py to Utilities.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/HMM/MarkovModel.py to MarkovModel.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/HMM/DynamicProgramming.py to DynamicProgramming.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/DocSQL.py to DocSQL.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Affy/CelFile.py to CelFile.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Affy/__init__.py to __init__.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/codonalign/codonseq.py to codonseq.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/codonalign/__init__.py to __init__.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/codonalign/codonalignment.py to codonalignment.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/codonalign/codonalphabet.py to codonalphabet.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/codonalign/chisq.py to chisq.pyc
byte-compiling /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Medline/__init__.py to __init__.pyc
writing byte-compilation script '/tmp/tmpu8PLas.py'
/usr/bin/python2 -O /tmp/tmpu8PLas.py
removing /tmp/tmpu8PLas.py
running install_egg_info
running egg_info
creating biopython.egg-info
writing requirements to biopython.egg-info/requires.txt
writing biopython.egg-info/PKG-INFO
writing top-level names to biopython.egg-info/top_level.txt
writing dependency_links to biopython.egg-info/dependency_links.txt
writing manifest file 'biopython.egg-info/SOURCES.txt'
reading manifest file 'biopython.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no previously-included files matching '*.pyc' found anywhere in distribution
warning: no previously-included files matching '*.pyo' found anywhere in distribution
warning: no previously-included files matching '*.py{}' found anywhere in distribution
warning: no previously-included files matching '*.py-e' found anywhere in distribution
writing manifest file 'biopython.egg-info/SOURCES.txt'
Copying biopython.egg-info to /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/biopython-1.70-py2.7.egg-info
running install_scripts
+ popd
~/build/BUILD/python-biopython-1.70
+ /usr/lib/rpm/find-debuginfo.sh -j4 --strict-build-id -m -i --build-id-seed 1.70-10.fc27 --unique-debug-suffix -1.70-10.fc27.aarch64 --unique-debug-src-base python-biopython-1.70-10.fc27.aarch64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/python-biopython-1.70
extracting debug info from /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/KDTree/_CKDTree.so
extracting debug info from /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/motifs/_pwm.so
extracting debug info from /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Nexus/cnexus.so
extracting debug info from /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/Cluster/cluster.so
extracting debug info from /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/cpairwise2.so
extracting debug info from /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.so
extracting debug info from /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages/Bio/trie.so
extracting debug info from /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/trie.cpython-36m-aarch64-linux-gnu.so
extracting debug info from /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/motifs/_pwm.cpython-36m-aarch64-linux-gnu.so
extracting debug info from /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/KDTree/_CKDTree.cpython-36m-aarch64-linux-gnu.so
extracting debug info from /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/cpairwise2.cpython-36m-aarch64-linux-gnu.so
extracting debug info from /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Nexus/cnexus.cpython-36m-aarch64-linux-gnu.so
extracting debug info from /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/Cluster/cluster.cpython-36m-aarch64-linux-gnu.so
extracting debug info from /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-36m-aarch64-linux-gnu.so
/usr/lib/rpm/sepdebugcrcfix: Updated 14 CRC32s, 0 CRC32s did match.
1465 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1
Bytecompiling .py files below /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7 using /usr/bin/python2.7
Bytecompiling .py files below /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6 using /usr/bin/python3.6
Bytecompiling .py files below /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib/debug/usr/lib64/python2.7 using /usr/bin/python2.7
Bytecompiling .py files below /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib/debug/usr/lib64/python3.6 using /usr/bin/python3.6
+ /usr/lib/rpm/brp-python-hardlink
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.m21cDZ
+ umask 022
+ cd /builddir/build/BUILD
~/build/BUILD/python-biopython-1.70/python2 ~/build/BUILD/python-biopython-1.70
+ cd python-biopython-1.70
+ pushd python2
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python2.7/site-packages
+ find . -name run_tests.py
+ xargs sed -i '1s|^#!/usr/bin/env python|#!/usr/bin/python2|'
++ ls 'test_*.py'
++ grep -v chapter
++ grep -v DSSP
++ grep -v Tutorial
ls: cannot access 'test_*.py': No such file or directory
+ popd
~/build/BUILD/python-biopython-1.70
~/build/BUILD/python-biopython-1.70/python3/Tests ~/build/BUILD/python-biopython-1.70
+ pushd python3/Tests
+ xargs sed -i '1s|^#!/usr/bin/env python|#!/usr/bin/python3|'
+ find . -name run_tests.py
++ grep -v chapter
++ grep -v NCBIXML
++ ls test_Ace.py test_Affy.py test_AlignIO.py test_AlignIO_ClustalIO.py test_AlignIO_EmbossIO.py test_AlignIO_FastaIO.py test_AlignIO_MauveIO.py test_AlignIO_PhylipIO.py test_AlignIO_convert.py test_AlignInfo.py test_Application.py test_BWA_tool.py test_BioSQL_MySQLdb.py test_BioSQL_MySQLdb_online.py test_BioSQL_mysql_connector.py test_BioSQL_mysql_connector_online.py test_BioSQL_psycopg2.py test_BioSQL_psycopg2_online.py test_BioSQL_sqlite3.py test_BioSQL_sqlite3_online.py test_CAPS.py test_CelFile.py test_Chi2.py test_ClustalOmega_tool.py test_Clustalw_tool.py test_Cluster.py test_CodonTable.py test_CodonUsage.py test_ColorSpiral.py test_Compass.py test_Consensus.py test_Crystal.py test_DSSP_tool.py test_Dialign_tool.py test_DocSQL.py test_EMBL_unittest.py test_Emboss.py test_EmbossPhylipNew.py test_EmbossPrimer.py test_Entrez.py test_Entrez_online.py test_Entrez_parser.py test_Enzyme.py test_ExPASy.py test_FSSP.py test_Fasttree_tool.py test_File.py test_GACrossover.py test_GAMutation.py test_GAOrganism.py test_GAQueens.py test_GARepair.py test_GASelection.py test_GenBank.py test_GenBank_unittest.py test_GenomeDiagram.py test_GraphicsBitmaps.py test_GraphicsChromosome.py test_GraphicsDistribution.py test_GraphicsGeneral.py test_HMMCasino.py test_HMMGeneral.py test_KDTree.py test_KEGG.py test_KEGG_online.py test_KGML_graphics.py test_KGML_graphics_online.py test_KGML_nographics.py test_KeyWList.py test_Location.py test_LogisticRegression.py test_MSAProbs_tool.py test_MafIO_index.py test_Mafft_tool.py test_MarkovModel.py test_Medline.py test_Muscle_tool.py test_NACCESS_tool.py test_NCBITextParser.py test_NCBIXML.py test_NCBI_BLAST_tools.py test_NCBI_qblast.py test_NNExclusiveOr.py test_NNGene.py test_NNGeneral.py test_NaiveBayes.py test_Nexus.py test_PAML_baseml.py test_PAML_codeml.py test_PAML_tools.py test_PAML_yn00.py test_PDB.py test_PDBList.py test_PDB_FragmentMapper.py test_PDB_KDTree.py test_PDB_MMCIF2Dict.py test_PDB_MMCIFParser.py test_PDB_Polypetide.py test_PDB_StructureAlignment.py test_PDB_Superimposer.py test_ParserSupport.py test_Pathway.py test_Phd.py test_Phylo.py test_PhyloXML.py test_Phylo_CDAO.py test_Phylo_NeXML.py test_Phylo_matplotlib.py test_Phylo_networkx.py test_PopGen_GenePop.py test_PopGen_GenePop_EasyController.py test_PopGen_GenePop_nodepend.py test_Prank_tool.py test_Probcons_tool.py test_ProtParam.py test_QCPSuperimposer.py test_RCSBFormats.py test_Restriction.py test_SCOP_Astral.py test_SCOP_Cla.py test_SCOP_Des.py test_SCOP_Dom.py test_SCOP_Hie.py test_SCOP_Raf.py test_SCOP_Residues.py test_SCOP_Scop.py test_SCOP_online.py test_SVDSuperimposer.py test_SearchIO_blast_tab.py test_SearchIO_blast_tab_index.py test_SearchIO_blast_text.py test_SearchIO_blast_xml.py test_SearchIO_blast_xml_index.py test_SearchIO_blat_psl.py test_SearchIO_blat_psl_index.py test_SearchIO_exonerate.py test_SearchIO_exonerate_text_index.py test_SearchIO_exonerate_vulgar_index.py test_SearchIO_fasta_m10.py test_SearchIO_fasta_m10_index.py test_SearchIO_hmmer2_text.py test_SearchIO_hmmer2_text_index.py test_SearchIO_hmmer3_domtab.py test_SearchIO_hmmer3_domtab_index.py test_SearchIO_hmmer3_tab.py test_SearchIO_hmmer3_tab_index.py test_SearchIO_hmmer3_text.py test_SearchIO_hmmer3_text_index.py test_SearchIO_model.py test_SearchIO_write.py test_SeqFeature.py test_SeqIO.py test_SeqIO_AbiIO.py test_SeqIO_FastaIO.py test_SeqIO_Insdc.py test_SeqIO_PdbIO.py test_SeqIO_QualityIO.py test_SeqIO_SeqXML.py test_SeqIO_convert.py test_SeqIO_features.py test_SeqIO_index.py test_SeqIO_online.py test_SeqIO_write.py test_SeqRecord.py test_SeqUtils.py test_Seq_objs.py test_SffIO.py test_SubsMat.py test_SwissProt.py test_TCoffee_tool.py test_TogoWS.py test_TreeConstruction.py test_Tutorial.py test_UniGene.py test_Uniprot.py test_Wise.py test_XXmotif_tool.py test_align.py test_bgzf.py test_cellosaurus.py test_codonalign.py test_geo.py test_kNN.py test_lowess.py test_mmtf.py test_mmtf_online.py test_motifs.py test_motifs_online.py test_pairwise2.py test_phenotype.py test_phenotype_fit.py test_phyml_tool.py test_prodoc.py test_prosite1.py test_prosite2.py test_psw.py test_raxml_tool.py test_samtools_tool.py test_seq.py test_translate.py test_trie.py
++ grep -v SeqIO
++ grep -v Phylo
++ grep -v Tutorial
++ grep -v Nexus
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_Ace.py
test_Ace ... ok
test_check_ACEParser (test_Ace.AceTestOne)
Test to check that ACEParser can parse the whole file into one record. ... ok
test_check_record_parser (test_Ace.AceTestOne)
Test to check that contig parser parses each contig into a contig. ... ok
test_check_ACEParser (test_Ace.AceTestThree)
Test to check that ACEParser can parse the whole file into one record. ... ok
test_check_record_parser (test_Ace.AceTestThree)
Test to check that record parser parses each contig into a record. ... ok
test_check_ACEParser (test_Ace.AceTestTwo)
Test to check that ACEParser can parse the whole file into one record. ... ok
test_check_record_parser (test_Ace.AceTestTwo)
Test to check that record parser parses each contig into a record. ... ok
----------------------------------------------------------------------
Ran 1 test in 0.263 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_Affy.py
test_Affy ... ok
testAffy3 (test_Affy.AffyTest) ... ok
testAffy3Backwards (test_Affy.AffyTest) ... ok
testAffy4 (test_Affy.AffyTest) ... ok
testAffyBadHeader (test_Affy.AffyTest) ... ok
testAffyStrict (test_Affy.AffyTest) ... ok
testAffyWrongModeRead (test_Affy.AffyTest) ... ok
testAffyWrongModeReadV4 (test_Affy.AffyTest) ... ok
----------------------------------------------------------------------
Ran 1 test in 0.040 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ /usr/bin/python3 run_tests.py --offline -v test_AlignIO.py
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
test_AlignIO ... ok
runTest (__main__.ComparisonTestCase)
test_AlignIO ... ok
----------------------------------------------------------------------
Ran 1 test in 8.639 seconds
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_AlignIO_ClustalIO.py
test_AlignIO_ClustalIO ... ok
test_cat_one_two (test_AlignIO_ClustalIO.TestClustalIO) ... ok
test_empy (test_AlignIO_ClustalIO.TestClustalIO)
Checking empty file. ... ok
test_kalign_header (test_AlignIO_ClustalIO.TestClustalIO)
Make sure we can parse the Kalign header. ... ok
test_one (test_AlignIO_ClustalIO.TestClustalIO) ... ok
test_three (test_AlignIO_ClustalIO.TestClustalIO) ... ok
test_two (test_AlignIO_ClustalIO.TestClustalIO) ... ok
test_write_read (test_AlignIO_ClustalIO.TestClustalIO)
Checking write/read. ... ok
test_write_read_single (test_AlignIO_ClustalIO.TestClustalIO)
Testing write/read when there is only one sequence. ... ok
----------------------------------------------------------------------
Ran 1 test in 0.295 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_AlignIO_EmbossIO.py
test_AlignIO_EmbossIO ... ok
test_pair_example (test_AlignIO_EmbossIO.TestEmbossIO) ... ok
test_pair_example2 (test_AlignIO_EmbossIO.TestEmbossIO) ... ok
test_pair_example3 (test_AlignIO_EmbossIO.TestEmbossIO) ... ok
test_pair_plus_simple (test_AlignIO_EmbossIO.TestEmbossIO) ... ok
test_simple_example (test_AlignIO_EmbossIO.TestEmbossIO) ... ok
----------------------------------------------------------------------
Ran 1 test in 0.290 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ /usr/bin/python3 run_tests.py --offline -v test_AlignIO_FastaIO.py
test_AlignIO_FastaIO ... ok
runTest (__main__.ComparisonTestCase)
test_AlignIO_FastaIO ... ok
----------------------------------------------------------------------
Ran 1 test in 0.432 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_AlignIO_MauveIO.py
test_AlignIO_MauveIO ... ok
test_one (test_AlignIO_MauveIO.TestMauveIO) ... ok
test_sequence_positions (test_AlignIO_MauveIO.TestMauveIO) ... ok
test_write_read (test_AlignIO_MauveIO.TestMauveIO) ... ok
----------------------------------------------------------------------
Ran 1 test in 0.388 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_AlignIO_PhylipIO.py
test_AlignIO_PhylipIO ... ok
test_concatenation (test_AlignIO_PhylipIO.TestPhylipIO) ... ok
test_five (test_AlignIO_PhylipIO.TestPhylipIO) ... ok
test_five_a (test_AlignIO_PhylipIO.TestPhylipIO) ... ok
test_four (test_AlignIO_PhylipIO.TestPhylipIO) ... ok
test_one (test_AlignIO_PhylipIO.TestPhylipIO) ... ok
test_two_and_three (test_AlignIO_PhylipIO.TestPhylipIO) ... ok
test_write_read (test_AlignIO_PhylipIO.TestPhylipIO) ... ok
----------------------------------------------------------------------
Ran 1 test in 0.289 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_AlignIO_convert.py
test_AlignIO_convert ... ok
test_Clustalw_hedgehog_aln_clustal_to_clustal (test_AlignIO_convert.ConvertTests)
Convert Clustalw/hedgehog.aln from clustal to clustal ... ok
test_Clustalw_hedgehog_aln_clustal_to_fasta (test_AlignIO_convert.ConvertTests)
Convert Clustalw/hedgehog.aln from clustal to fasta ... ok
test_Clustalw_hedgehog_aln_clustal_to_maf (test_AlignIO_convert.ConvertTests)
Convert Clustalw/hedgehog.aln from clustal to maf ... ok
test_Clustalw_hedgehog_aln_clustal_to_mauve (test_AlignIO_convert.ConvertTests)
Convert Clustalw/hedgehog.aln from clustal to mauve ... ok
test_Clustalw_hedgehog_aln_clustal_to_nexus (test_AlignIO_convert.ConvertTests)
Convert Clustalw/hedgehog.aln from clustal to nexus ... ok
test_Clustalw_hedgehog_aln_clustal_to_phylip (test_AlignIO_convert.ConvertTests)
Convert Clustalw/hedgehog.aln from clustal to phylip ... ok
test_Clustalw_hedgehog_aln_clustal_to_phylip-relaxed (test_AlignIO_convert.ConvertTests)
Convert Clustalw/hedgehog.aln from clustal to phylip-relaxed ... ok
test_Clustalw_hedgehog_aln_clustal_to_phylip-sequential (test_AlignIO_convert.ConvertTests)
Convert Clustalw/hedgehog.aln from clustal to phylip-sequential ... ok
test_Clustalw_hedgehog_aln_clustal_to_stockholm (test_AlignIO_convert.ConvertTests)
Convert Clustalw/hedgehog.aln from clustal to stockholm ... ok
test_Fasta_output001_m10_fasta-m10_to_clustal (test_AlignIO_convert.ConvertTests)
Convert Fasta/output001.m10 from fasta-m10 to clustal ... ok
test_Fasta_output001_m10_fasta-m10_to_fasta (test_AlignIO_convert.ConvertTests)
Convert Fasta/output001.m10 from fasta-m10 to fasta ... ok
test_Fasta_output001_m10_fasta-m10_to_maf (test_AlignIO_convert.ConvertTests)
Convert Fasta/output001.m10 from fasta-m10 to maf ... ok
test_Fasta_output001_m10_fasta-m10_to_mauve (test_AlignIO_convert.ConvertTests)
Convert Fasta/output001.m10 from fasta-m10 to mauve ... ok
test_Fasta_output001_m10_fasta-m10_to_nexus (test_AlignIO_convert.ConvertTests)
Convert Fasta/output001.m10 from fasta-m10 to nexus ... ok
test_Fasta_output001_m10_fasta-m10_to_phylip (test_AlignIO_convert.ConvertTests)
Convert Fasta/output001.m10 from fasta-m10 to phylip ... ok
test_Fasta_output001_m10_fasta-m10_to_phylip-relaxed (test_AlignIO_convert.ConvertTests)
Convert Fasta/output001.m10 from fasta-m10 to phylip-relaxed ... ok
test_Fasta_output001_m10_fasta-m10_to_phylip-sequential (test_AlignIO_convert.ConvertTests)
Convert Fasta/output001.m10 from fasta-m10 to phylip-sequential ... ok
test_Fasta_output001_m10_fasta-m10_to_stockholm (test_AlignIO_convert.ConvertTests)
Convert Fasta/output001.m10 from fasta-m10 to stockholm ... ok
test_GFF_multi_fna_fasta_to_clustal (test_AlignIO_convert.ConvertTests)
Convert GFF/multi.fna from fasta to clustal ... ok
test_GFF_multi_fna_fasta_to_fasta (test_AlignIO_convert.ConvertTests)
Convert GFF/multi.fna from fasta to fasta ... ok
test_GFF_multi_fna_fasta_to_maf (test_AlignIO_convert.ConvertTests)
Convert GFF/multi.fna from fasta to maf ... ok
test_GFF_multi_fna_fasta_to_mauve (test_AlignIO_convert.ConvertTests)
Convert GFF/multi.fna from fasta to mauve ... ok
test_GFF_multi_fna_fasta_to_nexus (test_AlignIO_convert.ConvertTests)
Convert GFF/multi.fna from fasta to nexus ... ok
test_GFF_multi_fna_fasta_to_phylip (test_AlignIO_convert.ConvertTests)
Convert GFF/multi.fna from fasta to phylip ... ok
test_GFF_multi_fna_fasta_to_phylip-relaxed (test_AlignIO_convert.ConvertTests)
Convert GFF/multi.fna from fasta to phylip-relaxed ... ok
test_GFF_multi_fna_fasta_to_phylip-sequential (test_AlignIO_convert.ConvertTests)
Convert GFF/multi.fna from fasta to phylip-sequential ... ok
test_GFF_multi_fna_fasta_to_stockholm (test_AlignIO_convert.ConvertTests)
Convert GFF/multi.fna from fasta to stockholm ... ok
test_IntelliGenetics_VIF_mase-pro_txt_ig_to_clustal (test_AlignIO_convert.ConvertTests)
Convert IntelliGenetics/VIF_mase-pro.txt from ig to clustal ... ok
test_IntelliGenetics_VIF_mase-pro_txt_ig_to_fasta (test_AlignIO_convert.ConvertTests)
Convert IntelliGenetics/VIF_mase-pro.txt from ig to fasta ... ok
test_IntelliGenetics_VIF_mase-pro_txt_ig_to_maf (test_AlignIO_convert.ConvertTests)
Convert IntelliGenetics/VIF_mase-pro.txt from ig to maf ... ok
test_IntelliGenetics_VIF_mase-pro_txt_ig_to_mauve (test_AlignIO_convert.ConvertTests)
Convert IntelliGenetics/VIF_mase-pro.txt from ig to mauve ... ok
test_IntelliGenetics_VIF_mase-pro_txt_ig_to_nexus (test_AlignIO_convert.ConvertTests)
Convert IntelliGenetics/VIF_mase-pro.txt from ig to nexus ... ok
test_IntelliGenetics_VIF_mase-pro_txt_ig_to_phylip (test_AlignIO_convert.ConvertTests)
Convert IntelliGenetics/VIF_mase-pro.txt from ig to phylip ... ok
test_IntelliGenetics_VIF_mase-pro_txt_ig_to_phylip-relaxed (test_AlignIO_convert.ConvertTests)
Convert IntelliGenetics/VIF_mase-pro.txt from ig to phylip-relaxed ... ok
test_IntelliGenetics_VIF_mase-pro_txt_ig_to_phylip-sequential (test_AlignIO_convert.ConvertTests)
Convert IntelliGenetics/VIF_mase-pro.txt from ig to phylip-sequential ... ok
test_IntelliGenetics_VIF_mase-pro_txt_ig_to_stockholm (test_AlignIO_convert.ConvertTests)
Convert IntelliGenetics/VIF_mase-pro.txt from ig to stockholm ... ok
test_NBRF_clustalw_pir_pir_to_clustal (test_AlignIO_convert.ConvertTests)
Convert NBRF/clustalw.pir from pir to clustal ... ok
test_NBRF_clustalw_pir_pir_to_fasta (test_AlignIO_convert.ConvertTests)
Convert NBRF/clustalw.pir from pir to fasta ... ok
test_NBRF_clustalw_pir_pir_to_maf (test_AlignIO_convert.ConvertTests)
Convert NBRF/clustalw.pir from pir to maf ... ok
test_NBRF_clustalw_pir_pir_to_mauve (test_AlignIO_convert.ConvertTests)
Convert NBRF/clustalw.pir from pir to mauve ... ok
test_NBRF_clustalw_pir_pir_to_nexus (test_AlignIO_convert.ConvertTests)
Convert NBRF/clustalw.pir from pir to nexus ... ok
test_NBRF_clustalw_pir_pir_to_phylip (test_AlignIO_convert.ConvertTests)
Convert NBRF/clustalw.pir from pir to phylip ... ok
test_NBRF_clustalw_pir_pir_to_phylip-relaxed (test_AlignIO_convert.ConvertTests)
Convert NBRF/clustalw.pir from pir to phylip-relaxed ... ok
test_NBRF_clustalw_pir_pir_to_phylip-sequential (test_AlignIO_convert.ConvertTests)
Convert NBRF/clustalw.pir from pir to phylip-sequential ... ok
test_NBRF_clustalw_pir_pir_to_stockholm (test_AlignIO_convert.ConvertTests)
Convert NBRF/clustalw.pir from pir to stockholm ... ok
test_Nexus_test_Nexus_input_nex_nexus_to_clustal (test_AlignIO_convert.ConvertTests)
Convert Nexus/test_Nexus_input.nex from nexus to clustal ... ok
test_Nexus_test_Nexus_input_nex_nexus_to_fasta (test_AlignIO_convert.ConvertTests)
Convert Nexus/test_Nexus_input.nex from nexus to fasta ... ok
test_Nexus_test_Nexus_input_nex_nexus_to_maf (test_AlignIO_convert.ConvertTests)
Convert Nexus/test_Nexus_input.nex from nexus to maf ... ok
test_Nexus_test_Nexus_input_nex_nexus_to_mauve (test_AlignIO_convert.ConvertTests)
Convert Nexus/test_Nexus_input.nex from nexus to mauve ... ok
test_Nexus_test_Nexus_input_nex_nexus_to_nexus (test_AlignIO_convert.ConvertTests)
Convert Nexus/test_Nexus_input.nex from nexus to nexus ... ok
test_Nexus_test_Nexus_input_nex_nexus_to_phylip (test_AlignIO_convert.ConvertTests)
Convert Nexus/test_Nexus_input.nex from nexus to phylip ... ok
test_Nexus_test_Nexus_input_nex_nexus_to_phylip-relaxed (test_AlignIO_convert.ConvertTests)
Convert Nexus/test_Nexus_input.nex from nexus to phylip-relaxed ... ok
test_Nexus_test_Nexus_input_nex_nexus_to_phylip-sequential (test_AlignIO_convert.ConvertTests)
Convert Nexus/test_Nexus_input.nex from nexus to phylip-sequential ... ok
test_Nexus_test_Nexus_input_nex_nexus_to_stockholm (test_AlignIO_convert.ConvertTests)
Convert Nexus/test_Nexus_input.nex from nexus to stockholm ... ok
test_Quality_example_fastq_fastq-sanger_to_clustal (test_AlignIO_convert.ConvertTests)
Convert Quality/example.fastq from fastq-sanger to clustal ... ok
test_Quality_example_fastq_fastq-sanger_to_fasta (test_AlignIO_convert.ConvertTests)
Convert Quality/example.fastq from fastq-sanger to fasta ... ok
test_Quality_example_fastq_fastq-sanger_to_maf (test_AlignIO_convert.ConvertTests)
Convert Quality/example.fastq from fastq-sanger to maf ... ok
test_Quality_example_fastq_fastq-sanger_to_mauve (test_AlignIO_convert.ConvertTests)
Convert Quality/example.fastq from fastq-sanger to mauve ... ok
test_Quality_example_fastq_fastq-sanger_to_nexus (test_AlignIO_convert.ConvertTests)
Convert Quality/example.fastq from fastq-sanger to nexus ... ok
test_Quality_example_fastq_fastq-sanger_to_phylip (test_AlignIO_convert.ConvertTests)
Convert Quality/example.fastq from fastq-sanger to phylip ... ok
test_Quality_example_fastq_fastq-sanger_to_phylip-relaxed (test_AlignIO_convert.ConvertTests)
Convert Quality/example.fastq from fastq-sanger to phylip-relaxed ... ok
test_Quality_example_fastq_fastq-sanger_to_phylip-sequential (test_AlignIO_convert.ConvertTests)
Convert Quality/example.fastq from fastq-sanger to phylip-sequential ... ok
test_Quality_example_fastq_fastq-sanger_to_stockholm (test_AlignIO_convert.ConvertTests)
Convert Quality/example.fastq from fastq-sanger to stockholm ... ok
test_Quality_example_fastq_fastq_to_clustal (test_AlignIO_convert.ConvertTests)
Convert Quality/example.fastq from fastq to clustal ... ok
test_Quality_example_fastq_fastq_to_fasta (test_AlignIO_convert.ConvertTests)
Convert Quality/example.fastq from fastq to fasta ... ok
test_Quality_example_fastq_fastq_to_maf (test_AlignIO_convert.ConvertTests)
Convert Quality/example.fastq from fastq to maf ... ok
test_Quality_example_fastq_fastq_to_mauve (test_AlignIO_convert.ConvertTests)
Convert Quality/example.fastq from fastq to mauve ... ok
test_Quality_example_fastq_fastq_to_nexus (test_AlignIO_convert.ConvertTests)
Convert Quality/example.fastq from fastq to nexus ... ok
test_Quality_example_fastq_fastq_to_phylip (test_AlignIO_convert.ConvertTests)
Convert Quality/example.fastq from fastq to phylip ... ok
test_Quality_example_fastq_fastq_to_phylip-relaxed (test_AlignIO_convert.ConvertTests)
Convert Quality/example.fastq from fastq to phylip-relaxed ... ok
test_Quality_example_fastq_fastq_to_phylip-sequential (test_AlignIO_convert.ConvertTests)
Convert Quality/example.fastq from fastq to phylip-sequential ... ok
test_Quality_example_fastq_fastq_to_stockholm (test_AlignIO_convert.ConvertTests)
Convert Quality/example.fastq from fastq to stockholm ... ok
test_Stockholm_simple_sth_stockholm_to_clustal (test_AlignIO_convert.ConvertTests)
Convert Stockholm/simple.sth from stockholm to clustal ... ok
test_Stockholm_simple_sth_stockholm_to_fasta (test_AlignIO_convert.ConvertTests)
Convert Stockholm/simple.sth from stockholm to fasta ... ok
test_Stockholm_simple_sth_stockholm_to_maf (test_AlignIO_convert.ConvertTests)
Convert Stockholm/simple.sth from stockholm to maf ... ok
test_Stockholm_simple_sth_stockholm_to_mauve (test_AlignIO_convert.ConvertTests)
Convert Stockholm/simple.sth from stockholm to mauve ... ok
test_Stockholm_simple_sth_stockholm_to_nexus (test_AlignIO_convert.ConvertTests)
Convert Stockholm/simple.sth from stockholm to nexus ... ok
test_Stockholm_simple_sth_stockholm_to_phylip (test_AlignIO_convert.ConvertTests)
Convert Stockholm/simple.sth from stockholm to phylip ... ok
test_Stockholm_simple_sth_stockholm_to_phylip-relaxed (test_AlignIO_convert.ConvertTests)
Convert Stockholm/simple.sth from stockholm to phylip-relaxed ... ok
test_Stockholm_simple_sth_stockholm_to_phylip-sequential (test_AlignIO_convert.ConvertTests)
Convert Stockholm/simple.sth from stockholm to phylip-sequential ... ok
test_Stockholm_simple_sth_stockholm_to_stockholm (test_AlignIO_convert.ConvertTests)
Convert Stockholm/simple.sth from stockholm to stockholm ... ok
----------------------------------------------------------------------
Ran 1 test in 1.403 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_AlignInfo.py
test_AlignInfo ... ok
test_nucleotides (test_AlignInfo.AlignInfoTests) ... ok
test_proteins (test_AlignInfo.AlignInfoTests) ... ok
test_pseudo_count (test_AlignInfo.AlignInfoTests) ... ok
----------------------------------------------------------------------
Ran 1 test in 0.389 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ /usr/bin/python3 run_tests.py --offline -v test_Application.py
test_Application ... ok
test_echo (test_Application.TestApp) ... ok
test_echo_capture_both (test_Application.TestApp) ... ok
test_echo_capture_neither (test_Application.TestApp) ... ok
test_echo_capture_stderr (test_Application.TestApp) ... ok
test_echo_capture_stdout (test_Application.TestApp) ... ok
test_echo_file_both (test_Application.TestApp) ... ok
test_echo_file_same (test_Application.TestApp) ... ok
test_echo_file_stderr (test_Application.TestApp) ... ok
test_echo_file_stdout (test_Application.TestApp) ... ok
----------------------------------------------------------------------
Ran 1 test in 0.190 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_BWA_tool.py
test_BWA_tool ... skipping. Install bwa and correctly set the file path to the program if you want to use it from Biopython
----------------------------------------------------------------------
Ran 1 test in 0.158 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_BioSQL_MySQLdb.py
test_BioSQL_MySQLdb ... skipping. BioSQL test configuration file biosql.ini missing (see biosql.ini.sample)
----------------------------------------------------------------------
Ran 1 test in 0.471 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_BioSQL_MySQLdb_online.py
test_BioSQL_MySQLdb_online ... skipping. internet not available
----------------------------------------------------------------------
Ran 1 test in 0.388 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_BioSQL_mysql_connector.py
test_BioSQL_mysql_connector ... skipping. BioSQL test configuration file biosql.ini missing (see biosql.ini.sample)
----------------------------------------------------------------------
Ran 1 test in 0.388 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_BioSQL_mysql_connector_online.py
test_BioSQL_mysql_connector_online ... skipping. internet not available
----------------------------------------------------------------------
Ran 1 test in 0.388 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_BioSQL_psycopg2.py
test_BioSQL_psycopg2 ... skipping. BioSQL test configuration file biosql.ini missing (see biosql.ini.sample)
----------------------------------------------------------------------
Ran 1 test in 0.383 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_BioSQL_psycopg2_online.py
test_BioSQL_psycopg2_online ... skipping. internet not available
----------------------------------------------------------------------
Ran 1 test in 0.390 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ /usr/bin/python3 run_tests.py --offline -v test_BioSQL_sqlite3.py
test_BioSQL_sqlite3 ... ok
test_SeqIO_loading (common_BioSQL.AutoSeqIOTests) ... ok
test_backwards_compatibility (test_BioSQL_sqlite3.BackwardsCompatibilityTest)
Check can re-use an old BioSQL SQLite3 database. ... ok
test_NC_000932 (common_BioSQL.ClosedLoopTest)
From GenBank file to BioSQL and back to a GenBank file, NC_000932. ... ok
test_NC_005816 (common_BioSQL.ClosedLoopTest)
From GenBank file to BioSQL and back to a GenBank file, NC_005816. ... ok
test_NT_019265 (common_BioSQL.ClosedLoopTest)
From GenBank file to BioSQL and back to a GenBank file, NT_019265. ... ok
test_arab1 (common_BioSQL.ClosedLoopTest)
From GenBank file to BioSQL and back to a GenBank file, arab1. ... ok
test_cor6_6 (common_BioSQL.ClosedLoopTest)
From GenBank file to BioSQL and back to a GenBank file, cor6_6. ... ok
test_no_ref (common_BioSQL.ClosedLoopTest)
From GenBank file to BioSQL and back to a GenBank file, noref. ... ok
test_one_of (common_BioSQL.ClosedLoopTest)
From GenBank file to BioSQL and back to a GenBank file, one_of. ... ok
test_protein_refseq2 (common_BioSQL.ClosedLoopTest)
From GenBank file to BioSQL and back to a GenBank file, protein_refseq2. ... ok
test_del_db_items (common_BioSQL.DeleteTest)
Check all associated data is deleted from an item. ... ok
test_server (common_BioSQL.DeleteTest)
Check BioSeqDatabase methods. ... ok
test_duplicate_id_load (common_BioSQL.DupLoadTest)
Make sure can't import records with same ID (in one go). ... ok
test_duplicate_load (common_BioSQL.DupLoadTest)
Make sure can't import a single record twice (in one go). ... ok
test_duplicate_load2 (common_BioSQL.DupLoadTest)
Make sure can't import a single record twice (in steps). ... ok
test_record_loading (common_BioSQL.InDepthLoadTest)
Make sure all records are correctly loaded. ... ok
test_reload (common_BioSQL.InDepthLoadTest)
Make sure can't reimport existing records. ... ok
test_seq_feature (common_BioSQL.InDepthLoadTest)
In depth check that SeqFeatures are transmitted through the db. ... ok
test_transfer (common_BioSQL.InDepthLoadTest)
Make sure can load record into another namespace. ... ok
test_load_database (common_BioSQL.LoaderTest)
Load SeqRecord objects into a BioSQL database. ... ok
test_cross_retrieval_of_items (common_BioSQL.MultiReadTest)
Test that valid ids can't be retrieved between namespaces. ... ok
test_get_db_items (common_BioSQL.MultiReadTest)
Check list, keys, length etc. ... ok
test_server (common_BioSQL.MultiReadTest)
Check BioSeqDatabase methods. ... ok
test_get_db_items (common_BioSQL.ReadTest)
Check list, keys, length etc. ... ok
test_lookup_items (common_BioSQL.ReadTest)
Test retrieval of items using various ids. ... ok
test_server (common_BioSQL.ReadTest)
Check BioSeqDatabase methods. ... ok
test_addition (common_BioSQL.SeqInterfaceTest)
Check can add DBSeq objects together. ... ok
test_convert (common_BioSQL.SeqInterfaceTest)
Check can turn a DBSeq object into a Seq or MutableSeq. ... ok
test_record_slicing (common_BioSQL.SeqInterfaceTest)
Check that slices of DBSeqRecord are retrieved properly. ... ok
test_seq (common_BioSQL.SeqInterfaceTest)
Make sure Seqs from BioSQL implement the right interface. ... ok
test_seq_features (common_BioSQL.SeqInterfaceTest)
Check SeqFeatures of a sequence. ... ok
test_seq_record (common_BioSQL.SeqInterfaceTest)
Make sure SeqRecords from BioSQL implement the right interface. ... ok
test_seq_slicing (common_BioSQL.SeqInterfaceTest)
Check that slices of sequences are retrieved properly. ... ok
test_ambiguous_location (common_BioSQL.SwissProtUnknownPositionTest)
Loaded uniprot-xml with ambiguous location in BioSQL. ... ok
test_NC_000932 (common_BioSQL.TransferTest)
From GenBank file to BioSQL, then again to a new namespace, NC_000932. ... ok
test_NC_005816 (common_BioSQL.TransferTest)
From GenBank file to BioSQL, then again to a new namespace, NC_005816. ... ok
test_NT_019265 (common_BioSQL.TransferTest)
From GenBank file to BioSQL, then again to a new namespace, NT_019265. ... ok
test_arab1 (common_BioSQL.TransferTest)
From GenBank file to BioSQL, then again to a new namespace, arab1. ... ok
test_cor6_6 (common_BioSQL.TransferTest)
From GenBank file to BioSQL, then again to a new namespace, cor6_6. ... ok
test_no_ref (common_BioSQL.TransferTest)
From GenBank file to BioSQL, then again to a new namespace, noref. ... ok
test_one_of (common_BioSQL.TransferTest)
From GenBank file to BioSQL, then again to a new namespace, one_of. ... ok
test_protein_refseq2 (common_BioSQL.TransferTest)
From GenBank file to BioSQL, then again to a new namespace, protein_refseq2. ... ok
----------------------------------------------------------------------
Ran 1 test in 19.559 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ /usr/bin/python3 run_tests.py --offline -v test_BioSQL_sqlite3_online.py
test_BioSQL_sqlite3_online ... skipping. internet not available
----------------------------------------------------------------------
Ran 1 test in 0.389 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ /usr/bin/python3 run_tests.py --offline -v test_CAPS.py
test_CAPS ... ok
test (test_CAPS.TestCAPS) ... ok
testNoCAPS (test_CAPS.TestCAPS) ... ok
test_trivial (test_CAPS.TestCAPS) ... ok
test_uneven (test_CAPS.TestCAPS) ... ok
----------------------------------------------------------------------
Ran 1 test in 1.157 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_CelFile.py
test_CelFile ... ok
test_read (test_CelFile.testCelFile) ... ok
----------------------------------------------------------------------
Ran 1 test in 0.024 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ /usr/bin/python3 run_tests.py --offline -v test_Chi2.py
test_Chi2 ... ok
test_cdf_chi2 (test_Chi2.ModTest) ... ok
test_incomplete_gamma (test_Chi2.ModTest) ... ok
test_ln_gamma (test_Chi2.ModTest) ... ok
----------------------------------------------------------------------
Ran 1 test in 0.804 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ /usr/bin/python3 run_tests.py --offline -v test_ClustalOmega_tool.py
test_ClustalOmega_tool ... skipping. Install clustalo if you want to use Clustal Omega from Biopython.
----------------------------------------------------------------------
Ran 1 test in 0.423 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ /usr/bin/python3 run_tests.py --offline -v test_Clustalw_tool.py
test_Clustalw_tool ... skipping. Install clustalw or clustalw2 if you want to use it from Biopython.
----------------------------------------------------------------------
Ran 1 test in 0.401 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_Cluster.py
test_Cluster ... ok
test_clusterdistance (test_Cluster.TestCluster) ... ok
test_distancematrix_kmedoids (test_Cluster.TestCluster) ... ok
test_kcluster (test_Cluster.TestCluster) ... ok
test_matrix_parse (test_Cluster.TestCluster) ... ok
test_median_mean (test_Cluster.TestCluster) ... ok
test_pca (test_Cluster.TestCluster) ... ok
test_somcluster (test_Cluster.TestCluster) ... ok
test_treecluster (test_Cluster.TestCluster) ... ok
----------------------------------------------------------------------
Ran 1 test in 0.075 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_CodonTable.py
test_CodonTable ... ok
runTest (__main__.ComparisonTestCase)
test_CodonTable ... ok
----------------------------------------------------------------------
Ran 1 test in 0.169 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_CodonUsage.py
test_CodonUsage ... ok
runTest (__main__.ComparisonTestCase)
test_CodonUsage ... ok
----------------------------------------------------------------------
Ran 1 test in 0.446 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_ColorSpiral.py
test_ColorSpiral ... ok
test_dict (test_ColorSpiral.DictTest)
get_color_dict() for classes A-D, no jitter. ... ok
test_colorlist (test_ColorSpiral.SpiralTest)
Get set of eight colours, no jitter, using ColorSpiral. ... ok
test_colorspiral (test_ColorSpiral.SpiralTest)
Get set of 16 colours, no jitter, using ColorSpiral. ... ok
test_colorspiral (test_ColorSpiral.SquareTest)
Set of 625 colours, with jitter, using get_colors(). ... ok
----------------------------------------------------------------------
Ran 1 test in 0.252 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ /usr/bin/python3 run_tests.py --offline -v test_Compass.py
test_Compass ... ok
testAlignmentParsingOne (test_Compass.CompassTest) ... ok
testAlignmentParsingTwo (test_Compass.CompassTest) ... ok
testCompassIteratorEasy (test_Compass.CompassTest) ... ok
testCompassIteratorHard (test_Compass.CompassTest) ... ok
testCompassParser (test_Compass.CompassTest) ... ok
testCompassScanAndConsume (test_Compass.CompassTest) ... ok
----------------------------------------------------------------------
Ran 1 test in 0.036 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ /usr/bin/python3 run_tests.py --offline -v test_Consensus.py
test_Consensus ... ok
test_bitstring (test_Consensus.BitStringTest) ... ok
test_bootstrap (test_Consensus.BootstrapTest) ... ok
test_bootstrap_consensus (test_Consensus.BootstrapTest) ... ok
test_bootstrap_trees (test_Consensus.BootstrapTest) ... ok
test_adam_consensus (test_Consensus.ConsensusTest) ... ok
test_count_clades (test_Consensus.ConsensusTest) ... ok
test_get_support (test_Consensus.ConsensusTest) ... ok
test_majority_consensus (test_Consensus.ConsensusTest) ... ok
test_strict_consensus (test_Consensus.ConsensusTest) ... ok
----------------------------------------------------------------------
Ran 1 test in 7.405 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ /usr/bin/python3 run_tests.py --offline -v test_Crystal.py
test_Crystal ... ok
testAdd (test_Crystal.ChainTestCase) ... ok
testAppend (test_Crystal.ChainTestCase) ... ok
testContains (test_Crystal.ChainTestCase) ... ok
testCount (test_Crystal.ChainTestCase) ... ok
testDelItem (test_Crystal.ChainTestCase) ... ok
testDelSlice (test_Crystal.ChainTestCase) ... ok
testEquals (test_Crystal.ChainTestCase) ... ok
testGetItem (test_Crystal.ChainTestCase) ... ok
testGetSlice (test_Crystal.ChainTestCase) ... ok
testIndex (test_Crystal.ChainTestCase) ... ok
testInsert (test_Crystal.ChainTestCase) ... ok
testLen (test_Crystal.ChainTestCase) ... ok
testRemove (test_Crystal.ChainTestCase) ... ok
testSetItem (test_Crystal.ChainTestCase) ... ok
testSetSlice (test_Crystal.ChainTestCase) ... ok
testClear (test_Crystal.CrystalTestCase) ... ok
testDelItem (test_Crystal.CrystalTestCase) ... ok
testGetItem (test_Crystal.CrystalTestCase) ... ok
testHasKey (test_Crystal.CrystalTestCase) ... ok
testItems (test_Crystal.CrystalTestCase) ... ok
testKeys (test_Crystal.CrystalTestCase) ... ok
testLen (test_Crystal.CrystalTestCase) ... ok
testSetItem (test_Crystal.CrystalTestCase) ... ok
testValues (test_Crystal.CrystalTestCase) ... ok
testEquals (test_Crystal.HeteroTestCase) ... ok
testInit (test_Crystal.HeteroTestCase) ... ok
testLen (test_Crystal.HeteroTestCase) ... ok
----------------------------------------------------------------------
Ran 1 test in 0.164 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_DSSP_tool.py
test_DSSP_tool ... skipping. Install dssp if you want to use it from Biopython.
----------------------------------------------------------------------
Ran 1 test in 0.405 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ /usr/bin/python3 run_tests.py --offline -v test_Dialign_tool.py
test_Dialign_tool ... skipping. Install DIALIGN2-2 if you want to use the Bio.Align.Applications wrapper.
----------------------------------------------------------------------
Ran 1 test in 0.280 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_DocSQL.py
test_DocSQL ... ok
runTest (__main__.ComparisonTestCase)
test_DocSQL ... ok
----------------------------------------------------------------------
Ran 1 test in 0.033 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ /usr/bin/python3 run_tests.py --offline -v test_EMBL_unittest.py
test_EMBL_unittest ... ok
test_embl_0_line (test_EMBL_unittest.EMBLTests)
Test SQ line with 0 length sequence ... ok
test_embl_content_after_co (test_EMBL_unittest.EMBLTests)
Test an AssertionError is thrown by content after a CO line ... ok
----------------------------------------------------------------------
Ran 1 test in 0.369 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_Emboss.py
test_Emboss ... skipping. Install EMBOSS if you want to use Bio.Emboss.
----------------------------------------------------------------------
Ran 1 test in 0.443 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_EmbossPhylipNew.py
test_EmbossPhylipNew ... skipping. Install the Emboss package 'PhylipNew' if you want to use the Bio.Emboss.Applications wrappers for phylogenetic tools.
----------------------------------------------------------------------
Ran 1 test in 0.341 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ /usr/bin/python3 run_tests.py --offline -v test_EmbossPrimer.py
test_EmbossPrimer ... ok
test_in_depth_single_parse (test_EmbossPrimer.Primer3ParseTest)
Make sure we get info right from a single primer find. ... ok
test_indepth_regular_parse (test_EmbossPrimer.Primer3ParseTest)
Make sure we get the data from normal primer3 files okay. ... ok
test_internal_oligo_single_parse (test_EmbossPrimer.Primer3ParseTest)
Make sure we can parse an internal oligo file correctly. ... ok
test_mutli_record_full (test_EmbossPrimer.Primer3ParseTest)
Test parsing multiple primer sets (NirK full) ... ok
test_mutli_record_fwd (test_EmbossPrimer.Primer3ParseTest)
Test parsing multiple primer sets (NirK forward). ... ok
test_simple_parse (test_EmbossPrimer.Primer3ParseTest)
Make sure that we can use all single target primer3 files. ... ok
test_primer_representation (test_EmbossPrimer.PrimerSearchInputTest)
Make sure we can output primer information correctly. ... ok
test_in_depth_normal_parse (test_EmbossPrimer.PrimersearchParseTest)
Make sure the output from a simple primersearch file is correct. ... ok
test_simple_parse (test_EmbossPrimer.PrimersearchParseTest)
Make sure that we can parse all primersearch files. ... ok
----------------------------------------------------------------------
Ran 1 test in 0.055 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_Entrez.py
test_Entrez ... ok
test_construct_cgi_ecitmatch (test_Entrez.TestURLConstruction) ... ok
test_construct_cgi_efetch (test_Entrez.TestURLConstruction) ... ok
test_construct_cgi_einfo (test_Entrez.TestURLConstruction)
Test constructed url for request to Entrez. ... ok
test_construct_cgi_elink1 (test_Entrez.TestURLConstruction) ... ok
test_construct_cgi_elink2 (test_Entrez.TestURLConstruction)
Commas: Link from protein to gene. ... ok
test_construct_cgi_elink3 (test_Entrez.TestURLConstruction)
Multiple ID entries: Find one-to-one links from protein to gene. ... ok
test_construct_cgi_epost1 (test_Entrez.TestURLConstruction) ... ok
test_construct_cgi_epost2 (test_Entrez.TestURLConstruction) ... ok
test_email_warning (test_Entrez.TestURLConstruction)
Test issuing warning when user does not specify email address. ... ok
----------------------------------------------------------------------
Ran 1 test in 0.117 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_Entrez_online.py
test_Entrez_online ... skipping. internet not available
----------------------------------------------------------------------
Ran 1 test in 0.021 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ /usr/bin/python3 run_tests.py --offline -v test_Entrez_parser.py
test_Entrez_parser ... ok
test_fasta (test_Entrez_parser.EFetchTest)
Test error handling when presented with Fasta non-XML data. ... ok
test_genbank (test_Entrez_parser.EFetchTest)
Test error handling when presented with GenBank non-XML data. ... ok
test_nucleotide1 (test_Entrez_parser.EFetchTest)
Test parsing XML returned by EFetch, Nucleotide database (first test). ... ok
test_nucleotide2 (test_Entrez_parser.EFetchTest)
Test parsing XML returned by EFetch, Nucleotide database (second test). ... ok
test_omim (test_Entrez_parser.EFetchTest)
Test parsing XML returned by EFetch, OMIM database. ... ok
test_protein (test_Entrez_parser.EFetchTest)
Test parsing XML returned by EFetch, Protein database. ... ok
test_pubmed1 (test_Entrez_parser.EFetchTest)
Test parsing XML returned by EFetch, PubMed database (first test). ... ok
test_pubmed2 (test_Entrez_parser.EFetchTest)
Test parsing XML returned by EFetch, PubMed database (second test). ... ok
test_pubmed_html (test_Entrez_parser.EFetchTest)
Test error handling when presented with HTML (so XML-like) data. ... ok
test_taxonomy (test_Entrez_parser.EFetchTest)
Test parsing XML returned by EFetch, Taxonomy database. ... ok
test_truncated_xml (test_Entrez_parser.EFetchTest)
Test error handling for a truncated XML declaration. ... ok
test_xml_without_declaration (test_Entrez_parser.EFetchTest)
Test error handling for a missing XML declaration. ... ok
test_egquery1 (test_Entrez_parser.EGQueryTest)
Test parsing XML output returned by EGQuery (first test). ... ok
test_egquery2 (test_Entrez_parser.EGQueryTest)
Test parsing XML output returned by EGQuery (second test). ... ok
test_corrupted (test_Entrez_parser.EInfoTest)
Test if corrupted XML is handled correctly. ... ok
test_list (test_Entrez_parser.EInfoTest)
Test parsing database list returned by EInfo. ... ok
test_pubmed1 (test_Entrez_parser.EInfoTest)
Test parsing database info returned by EInfo. ... ok
test_pubmed2 (test_Entrez_parser.EInfoTest)
Test validating the XML against the DTD. ... ok
test_pubmed3 (test_Entrez_parser.EInfoTest)
Test non-validating parser on XML with an inconsistent DTD. ... ok
test_medline (test_Entrez_parser.ELinkTest)
Test parsing medline indexed articles returned by ELink. ... ok
test_nucleotide (test_Entrez_parser.ELinkTest)
Test parsing Nucleotide to Protein links returned by ELink. ... ok
test_pubmed1 (test_Entrez_parser.ELinkTest)
Test parsing pubmed links returned by ELink (first test). ... ok
test_pubmed2 (test_Entrez_parser.ELinkTest)
Test parsing pubmed links returned by ELink (second test). ... ok
test_pubmed3 (test_Entrez_parser.ELinkTest)
Test parsing pubmed link returned by ELink (third test). ... ok
test_pubmed4 (test_Entrez_parser.ELinkTest)
Test parsing pubmed links returned by ELink (fourth test). ... ok
test_pubmed5 (test_Entrez_parser.ELinkTest)
Test parsing pubmed links returned by ELink (fifth test). ... ok
test_pubmed6 (test_Entrez_parser.ELinkTest)
Test parsing pubmed links returned by ELink (sixth test). ... ok
test_epost (test_Entrez_parser.EPostTest)
Test parsing XML returned by EPost. ... ok
test_invalid (test_Entrez_parser.EPostTest)
Test parsing XML returned by EPost with invalid id (overflow tag). ... ok
test_wrong (test_Entrez_parser.EPostTest)
Test parsing XML returned by EPost with incorrect arguments. ... ok
test_journals (test_Entrez_parser.ESearchTest)
Test parsing XML returned by ESearch from the Journals database. ... ok
test_notfound (test_Entrez_parser.ESearchTest)
Test parsing XML returned by ESearch when no items were found. ... ok
test_nucleotide (test_Entrez_parser.ESearchTest)
Test parsing XML returned by ESearch from the Nucleotide database. ... ok
test_pmc (test_Entrez_parser.ESearchTest)
Test parsing XML returned by ESearch from PubMed Central. ... ok
test_protein (test_Entrez_parser.ESearchTest)
Test parsing XML returned by ESearch from the Protein database. ... ok
test_pubmed1 (test_Entrez_parser.ESearchTest)
Test parsing XML returned by ESearch from PubMed (first test). ... ok
test_pubmed2 (test_Entrez_parser.ESearchTest)
Test parsing XML returned by ESearch from PubMed (second test). ... ok
test_pubmed3 (test_Entrez_parser.ESearchTest)
Test parsing XML returned by ESearch from PubMed (third test). ... ok
test_espell (test_Entrez_parser.ESpellTest)
Test parsing XML output returned by ESpell. ... ok
test_journals (test_Entrez_parser.ESummaryTest)
Test parsing XML returned by ESummary from the Journals database. ... ok
test_nucleotide (test_Entrez_parser.ESummaryTest)
Test parsing XML returned by ESummary from the Nucleotide database. ... ok
test_protein (test_Entrez_parser.ESummaryTest)
Test parsing XML returned by ESummary from the Protein database. ... ok
test_pubmed (test_Entrez_parser.ESummaryTest)
Test parsing XML returned by ESummary from PubMed. ... ok
test_structure (test_Entrez_parser.ESummaryTest)
Test parsing XML returned by ESummary from the Structure database. ... ok
test_taxonomy (test_Entrez_parser.ESummaryTest)
Test parsing XML returned by ESummary from the Taxonomy database. ... ok
test_unists (test_Entrez_parser.ESummaryTest)
Test parsing XML returned by ESummary from the UniSTS database. ... ok
test_wrong (test_Entrez_parser.ESummaryTest)
Test parsing XML returned by ESummary with incorrect arguments. ... ok
test_BytesIO (test_Entrez_parser.GeneralTests)
Test parsing a BytesIO handle (bytes not unicode). ... ok
test_StringIO (test_Entrez_parser.GeneralTests)
Test parsing a StringIO handle (unicode not bytes). ... ok
test_bytes_handle (test_Entrez_parser.GeneralTests)
Test parsing a handle opened in binary mode. ... ok
test_closed_handle (test_Entrez_parser.GeneralTests)
Test parsing closed handle fails gracefully. ... ok
test_text_handle (test_Entrez_parser.GeneralTests)
Test parsing a handle opened in text mode. ... ok
----------------------------------------------------------------------
Ran 1 test in 0.719 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_Enzyme.py
test_Enzyme ... ok
test_lactate (test_Enzyme.TestEnzyme)
Parsing ENZYME record for lactate racemase (5.1.2.1) ... ok
test_lipoprotein (test_Enzyme.TestEnzyme)
Parsing ENZYME record for lipoprotein lipase (3.1.1.34) ... ok
test_parse_many (test_Enzyme.TestEnzyme)
Check parse function with multiple records. ... ok
test_parse_one (test_Enzyme.TestEnzyme)
Check parse function with one record. ... ok
test_parse_zero (test_Enzyme.TestEnzyme) ... ok
test_proline (test_Enzyme.TestEnzyme)
Parsing ENZYME record for proline racemase (5.1.1.4) ... ok
test_valine (test_Enzyme.TestEnzyme)
Parsing ENZYME record for valine decarboxylase (4.1.1.14) ... ok
----------------------------------------------------------------------
Ran 1 test in 0.124 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_ExPASy.py
test_ExPASy ... skipping. internet not available
----------------------------------------------------------------------
Ran 1 test in 0.017 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ /usr/bin/python3 run_tests.py --offline -v test_FSSP.py
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
test_FSSP ... ok
runTest (__main__.ComparisonTestCase)
test_FSSP ... ok
----------------------------------------------------------------------
Ran 1 test in 6.225 seconds
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_Fasttree_tool.py
test_Fasttree_tool ... skipping. Install FastTree and correctly set the file path to the program if you want to use it from Biopython.
----------------------------------------------------------------------
Ran 1 test in 0.802 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_File.py
test_File ... ok
test_handle (test_File.AsHandleTestCase)
Test as_handle with a file-like object argument ... ok
test_path (test_File.AsHandleTestCase)
Test as_handle with a path argument ... ok
test_stringio (test_File.AsHandleTestCase) ... ok
test_one (test_File.UndoHandleTests) ... ok
test_read (test_File.UndoHandleTests)
test read method ... ok
test_undohandle_read_block (test_File.UndoHandleTests) ... ok
----------------------------------------------------------------------
Ran 1 test in 0.123 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_GACrossover.py
test_GACrossover ... ok
test_basic_asym_crossover (test_GACrossover.FourPointTest)
Test basic asymmetric 2-point crossover functionality. ... ok
test_basic_crossover (test_GACrossover.FourPointTest)
Test basic 4-point crossover functionality. ... ok
test_prop_sym_crossover (test_GACrossover.FourPointTest)
Test properties of symmetric 4-point crossover. ... ok
test_basic_crossover (test_GACrossover.InterleaveTest)
Test basic interleave crossover functionality. ... ok
test_prop_asym_crossover (test_GACrossover.InterleaveTest)
Test basic interleave crossover with asymmetric genomes. ... ok
test_prop_sym_crossover (test_GACrossover.InterleaveTest)
Test properties of interleave point crossover. ... ok
test_keep_higher (test_GACrossover.SafeFitnessTest)
Make sure we always keep higher fitness when specified. ... ok
test_keep_lower (test_GACrossover.SafeFitnessTest)
Make sure we do normal crossover functionality when specified. ... ok
test_basic_crossover (test_GACrossover.SinglePointTest)
Test basic point crossover functionality. ... ok
test_basic_asym_crossover (test_GACrossover.TwoPointTest)
Test basic asymmetric 2-point crossover functionality. ... ok
test_basic_crossover (test_GACrossover.UniformTest)
Test basic uniform crossover functionality. ... ok
test_ds_prop_uniform_crossover (test_GACrossover.UniformTest)
Test properties of differing genome length, uniform crossovers. ... ok
test_ss_prop_uniform_crossover (test_GACrossover.UniformTest)
Test properties of equal genome length, uniform crossovers. ... ok
----------------------------------------------------------------------
Ran 1 test in 0.289 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ /usr/bin/python3 run_tests.py --offline -v test_GAMutation.py
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
test_GAMutation ... ok
test_always_mutate (test_GAMutation.ConversionTest)
Test ability to cause mutations. ... ok
test_never_mutate (test_GAMutation.ConversionTest)
Make sure we do not mutate at unexpected times. ... ok
test_keep_higher (test_GAMutation.SafeFitnessTest)
Make sure we always keep the higher fitness. ... ok
test_keep_new (test_GAMutation.SafeFitnessTest)
Make sure we always keep the new organism when specified. ... ok
test_always_mutate (test_GAMutation.SinglePositionTest)
Test ability to cause mutations. ... ok
test_never_mutate (test_GAMutation.SinglePositionTest)
Make sure we do not mutate at unexpected times. ... ok
----------------------------------------------------------------------
Ran 1 test in 0.453 seconds
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_GAOrganism.py
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
test_GAOrganism ... ok
test_function_population (test_GAOrganism.CreatePopulationTest)
Create a population using a function to generate genomes. ... ok
test_random_population (test_GAOrganism.CreatePopulationTest)
Create a population randomly from a alphabet. ... ok
test_random_population_types (test_GAOrganism.CreatePopulationTest)
Creating a random population with different types of alphabets. ... ok
test_organism_basic (test_GAOrganism.OrganismTest)
Exercise basic organism functionality. ... ok
test_organism_copy (test_GAOrganism.OrganismTest)
Test copying of organisms. ... ok
test_organism_fitness (test_GAOrganism.OrganismTest)
Test the ability to deal with the fitness of the genome. ... ok
test_provide_fitness (test_GAOrganism.OrganismTest)
Test that providing a pre-calculated fitness works. ... ok
----------------------------------------------------------------------
Ran 1 test in 0.262 seconds
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_GAQueens.py
test_GAQueens ... ok
test_queens (test_GAQueens.QueensTest)
Place five queens with a GA. ... ok
----------------------------------------------------------------------
Ran 1 test in 0.451 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_GARepair.py
test_GARepair ... ok
test_multiple_repair (test_GARepair.AmbiguousRepairTest)
Test repair of multiple ambiguous positions in a genome. ... ok
test_single_repair (test_GARepair.AmbiguousRepairTest)
Test repair of a single ambiguous position in a genome. ... ok
----------------------------------------------------------------------
Ran 1 test in 0.286 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_GASelection.py
test_GASelection ... ok
test_get_new_organism (test_GASelection.DiversitySelectionTest)
Getting a new organism not in the new population. ... ok
test_no_retrieve_organism (test_GASelection.DiversitySelectionTest)
Test not getting an organism already in the new population. ... ok
test_selection (test_GASelection.DiversitySelectionTest)
Test basic selection on a small population. ... ok
test_select_best (test_GASelection.RouletteWheelSelectionTest)
Ensure selection of a best organism in a population of 2. ... ok
test_selection (test_GASelection.RouletteWheelSelectionTest)
Test basic selection on a small population. ... ok
test_select_best (test_GASelection.TournamentSelectionTest)
Ensure selection of the best organism in a population of 2. ... ok
test_selection (test_GASelection.TournamentSelectionTest)
Test basic selection on a small population. ... ok
----------------------------------------------------------------------
Ran 1 test in 0.314 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_GenBank.py
test_GenBank ... ok
runTest (__main__.ComparisonTestCase)
test_GenBank ... ok
----------------------------------------------------------------------
Ran 1 test in 0.954 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ /usr/bin/python3 run_tests.py --offline -v test_GenBank_unittest.py
test_GenBank_unittest ... ok
test_000_genbank_bad_loc_wrap_warning (test_GenBank_unittest.GenBankTests)
Feature line wrapping warning. ... ok
test_001_negative_location_warning (test_GenBank_unittest.GenBankTests)
Un-parsable feature location warning. ... ok
test_dbline_embl_gb (test_GenBank_unittest.GenBankTests)
GenBank / EMBL paired records with PR project entry: EMBL ... ok
test_dbline_gb_embl (test_GenBank_unittest.GenBankTests)
GenBank / EMBL paired records with PR project entry: GenBank ... ok
test_dblink (test_GenBank_unittest.GenBankTests)
GenBank record with old DBLINK project entry. ... ok
test_dblink_two (test_GenBank_unittest.GenBankTests)
GenBank record with old and new DBLINK project entries. ... ok
test_dot_lineage (test_GenBank_unittest.GenBankTests)
Missing taxonomy lineage. ... ok
test_genbank_bad_loc_wrap_parsing (test_GenBank_unittest.GenBankTests)
Bad location wrapping. ... ok
test_genbank_read (test_GenBank_unittest.GenBankTests)
GenBank.read(...) simple test. ... ok
test_genbank_read_invalid (test_GenBank_unittest.GenBankTests)
GenBank.read(...) error on invalid file (e.g. FASTA file). ... ok
test_genbank_read_multirecord (test_GenBank_unittest.GenBankTests)
GenBank.read(...) error on multiple record input. ... ok
test_genbank_read_no_origin_no_end (test_GenBank_unittest.GenBankTests)
GenBank.read(...) error on malformed file. ... ok
test_invalid_product_line_raises_value_error (test_GenBank_unittest.GenBankTests)
Parsing invalid product line. ... ok
test_locus_line_topogoly (test_GenBank_unittest.GenBankTests)
Test if chromosome topology is conserved ... ok
test_long_names (test_GenBank_unittest.GenBankTests)
Various GenBank names which push the column based LOCUS line. ... ok
test_negative_location (test_GenBank_unittest.GenBankTests)
Negative feature locations. ... ok
test_qualifier_order (test_GenBank_unittest.GenBankTests)
Check the qualifier order is preserved. ... ok
test_structured_comment_parsing (test_GenBank_unittest.GenBankTests)
Structued comment parsing. ... ok
test_first_line_imgt (test_GenBank_unittest.LineOneTests)
Check IMGT ID line parsing. ... ok
test_topology_embl (test_GenBank_unittest.LineOneTests)
Check EMBL ID line parsing. ... ok
test_topology_genbank (test_GenBank_unittest.LineOneTests)
Check GenBank LOCUS line parsing. ... ok
test_mad_dots (test_GenBank_unittest.OutputTests)
Writing and reading back accesssion.version variants. ... ok
----------------------------------------------------------------------
Ran 1 test in 0.732 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_GenomeDiagram.py
test_GenomeDiagram ... Warn: Can't find .pfb for face 'Times-Roman'
ok
test_color_conversions (test_GenomeDiagram.ColorsTest)
Test color translations. ... ok
test_add_track (test_GenomeDiagram.DiagramTest) ... ok
test_add_track_error (test_GenomeDiagram.DiagramTest)
Test adding unspecified track. ... ok
test_add_track_to_occupied_level (test_GenomeDiagram.DiagramTest) ... ok
test_del_tracks (test_GenomeDiagram.DiagramTest) ... ok
test_diagram_via_methods_pdf (test_GenomeDiagram.DiagramTest)
Construct and draw PDF using method approach. ... ok
test_diagram_via_object_pdf (test_GenomeDiagram.DiagramTest)
Construct and draw PDF using object approach. ... ok
test_get_tracks (test_GenomeDiagram.DiagramTest) ... ok
test_move_track (test_GenomeDiagram.DiagramTest) ... ok
test_partial_diagram (test_GenomeDiagram.DiagramTest)
construct and draw SVG and PDF for just part of a SeqRecord. ... ok
test_renumber (test_GenomeDiagram.DiagramTest)
Test renumbering tracks. ... ok
test_str (test_GenomeDiagram.DiagramTest)
Test diagram's info as string. ... ok
test_write_arguments (test_GenomeDiagram.DiagramTest)
Check how the write methods respond to output format arguments. ... ok
test_limits (test_GenomeDiagram.GraphTest)
Check line graphs. ... ok
test_slicing (test_GenomeDiagram.GraphTest)
Check GraphData slicing. ... ok
test_label_default (test_GenomeDiagram.LabelTest)
Feature labels - default. ... ok
test_all_sigils (test_GenomeDiagram.SigilsTest)
All sigils. ... ok
test_arrow_heads (test_GenomeDiagram.SigilsTest)
Feature arrow sigils, varying heads. ... ok
test_arrow_shafts (test_GenomeDiagram.SigilsTest)
Feature arrow sigils, varying shafts. ... ok
test_big_arrow_shafts (test_GenomeDiagram.SigilsTest)
Feature big-arrow sigils, varying shafts. ... ok
test_labels (test_GenomeDiagram.SigilsTest)
Feature labels. ... ok
test_long_arrow_heads (test_GenomeDiagram.SigilsTest)
Feature ARROW sigil heads within bounding box. ... ok
test_long_bigarrow_heads (test_GenomeDiagram.SigilsTest)
Feature BIGARROW sigil heads within bounding box. ... ok
test_long_jaggy (test_GenomeDiagram.SigilsTest)
Feature JAGGY sigil heads within bounding box. ... ok
test_long_octo_heads (test_GenomeDiagram.SigilsTest)
Feature OCTO sigil heads within bounding box. ... ok
test_small_arrow_heads (test_GenomeDiagram.SigilsTest)
Feature arrow sigil heads within bounding box. ... ok
----------------------------------------------------------------------
Ran 1 test in 10.312 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_GraphicsBitmaps.py
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
test_GraphicsBitmaps ... Warn: Can't find .pfb for face 'Times-Roman'
skipping. Check the fonts needed by ReportLab if you want bitmaps from Bio.Graphics
Can't setFont(Times-Roman) missing the T1 files?
Originally <class 'TypeError'>: makeT1Font() argument 2 must be str, not None
----------------------------------------------------------------------
Ran 1 test in 0.365 seconds
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ /usr/bin/python3 run_tests.py --offline -v test_GraphicsChromosome.py
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
test_GraphicsChromosome ... ok
test_add_count (test_GraphicsChromosome.ChromosomeCountTest)
Add counts to specific chromosome segments. ... ok
test_add_label (test_GraphicsChromosome.ChromosomeCountTest)
Add labels to chromosome segments. ... ok
test_color_from_count (test_GraphicsChromosome.ChromosomeCountTest)
Retrieve a color from a count number with the default color scheme. ... ok
test_fill_chromosome (test_GraphicsChromosome.ChromosomeCountTest)
Test filling out the information on a chromosome. ... ok
test_get_segment_info (test_GraphicsChromosome.ChromosomeCountTest)
Test retrieval of segment information. ... ok
test_set_scale (test_GraphicsChromosome.ChromosomeCountTest)
Set the scale for a chromosome segment. ... ok
test_random_organism (test_GraphicsChromosome.OrganismGraphicTest)
Generate an organism with random chromosome info. ... ok
test_simple_organism (test_GraphicsChromosome.OrganismGraphicTest)
Test the basic functionality of drawing an organism. ... ok
test_simple_organism_pdf (test_GraphicsChromosome.OrganismGraphicTest)
Output a simple organism to a PDF file. ... ok
test_simple_organism_ps (test_GraphicsChromosome.OrganismGraphicTest)
Output a simple organism to a postscript file. ... ok
test_simple_organism_svg (test_GraphicsChromosome.OrganismGraphicTest)
Output a simple organism to an SVG file. ... ok
test_widget (test_GraphicsChromosome.OrganismGraphicTest)
Try widget derived functionality. ... ok
test_simple_tRNA_seqfeatures (test_GraphicsChromosome.OrganismSubAnnotationsTest)
Test sub-annotations (as SeqFeatures) on a genome segment, tRNA for Arabidopsis ... ok
test_simple_tRNA_tuples (test_GraphicsChromosome.OrganismSubAnnotationsTest)
Test sub-annotations (as tuples) on a genome segment, tRNA for Arabidopsis ... ok
----------------------------------------------------------------------
Ran 1 test in 5.929 seconds
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_GraphicsDistribution.py
test_GraphicsDistribution ... ok
test_multi_page (test_GraphicsDistribution.BarChartTest)
Create a page with multiple distributions on it. ... ok
test_simple_page (test_GraphicsDistribution.BarChartTest)
Test displaying a page with single distribution. ... ok
----------------------------------------------------------------------
Ran 1 test in 0.641 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_GraphicsGeneral.py
test_GraphicsGeneral ... ok
test_simple_scatter_plot_1 (test_GraphicsGeneral.ComparativeTest)
Test creation of a simple ScatterPlot with one list. ... ok
test_simple_scatter_plot_7 (test_GraphicsGeneral.ComparativeTest)
Test creation of a simple ScatterPlot with more lists. ... ok
----------------------------------------------------------------------
Ran 1 test in 3.364 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_HMMCasino.py
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
test_HMMCasino ... ok
runTest (__main__.ComparisonTestCase)
test_HMMCasino ... ok
----------------------------------------------------------------------
Ran 1 test in 1.772 seconds
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_HMMGeneral.py
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
test_HMMGeneral ... ok
test_log_likelihood (test_HMMGeneral.AbstractTrainerTest)
Calculate log likelihood. ... ok
test_ml_estimator (test_HMMGeneral.AbstractTrainerTest)
Test the maximum likelihood estimator for simple cases. ... ok
test_allow_transition (test_HMMGeneral.HiddenMarkovModelTest)
Testing allow_transition ... ok
test_non_ergodic (test_HMMGeneral.HiddenMarkovModelTest)
Non-ergodic model (meaning that some transitions are not allowed). ... ok
test_simple_hmm (test_HMMGeneral.HiddenMarkovModelTest)
Test a simple model with 2 states and 2 symbols. ... ok
test_transitions_from (test_HMMGeneral.HiddenMarkovModelTest)
Testing the calculation of transitions_from ... ok
test_transitions_to (test_HMMGeneral.HiddenMarkovModelTest)
Testing the calculation of transitions_to ... ok
test_allow_all_transitions (test_HMMGeneral.MarkovModelBuilderTest)
Testing allow_all_transitions. ... ok
test_set_equal_probabilities (test_HMMGeneral.MarkovModelBuilderTest) ... ok
test_set_initial_probabilities (test_HMMGeneral.MarkovModelBuilderTest) ... ok
test_set_random_probabilities (test_HMMGeneral.MarkovModelBuilderTest) ... ok
test_test_initialize (test_HMMGeneral.MarkovModelBuilderTest)
Making sure MarkovModelBuilder is initialized correctly. ... ok
test_calculate_s_value (test_HMMGeneral.ScaledDPAlgorithmsTest)
Testing the calculation of s values. ... ok
----------------------------------------------------------------------
Ran 1 test in 0.274 seconds
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_KDTree.py
test_KDTree ... ok
test_KDTree (test_KDTree.KDTreeTest) ... ok
test_KDTree_neighbour (test_KDTree.KDTreeTest) ... ok
----------------------------------------------------------------------
Ran 1 test in 2.001 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_KEGG.py
test_KEGG ... ok
test_irregular (test_KEGG.CompoundTests) ... ok
test_sample (test_KEGG.CompoundTests) ... ok
test_4letter (test_KEGG.EnzymeTests) ... ok
test_irregular (test_KEGG.EnzymeTests) ... ok
test_new (test_KEGG.EnzymeTests) ... ok
test_sample (test_KEGG.EnzymeTests) ... ok
test_map00950 (test_KEGG.MapTests) ... ok
----------------------------------------------------------------------
Ran 1 test in 0.117 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ /usr/bin/python3 run_tests.py --offline -v test_KEGG_online.py
test_KEGG_online ... skipping. internet not available
----------------------------------------------------------------------
Ran 1 test in 0.380 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ /usr/bin/python3 run_tests.py --offline -v test_KGML_graphics.py
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
test_KGML_graphics ... ok
test_render_KGML_basic (test_KGML_graphics.KGMLPathwayTest)
Basic rendering of KGML: write to PDF without modification. ... ok
test_render_KGML_modify (test_KGML_graphics.KGMLPathwayTest)
Rendering of KGML to PDF, with modification. ... ok
test_render_KGML_transparency (test_KGML_graphics.KGMLPathwayTest)
Rendering of KGML to PDF, with color alpha channel. ... ok
----------------------------------------------------------------------
Ran 1 test in 32.065 seconds
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_KGML_graphics_online.py
test_KGML_graphics_online ... skipping. internet not available
----------------------------------------------------------------------
Ran 1 test in 0.017 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_KGML_nographics.py
test_KGML_nographics ... ok
test_read_and_write_KGML_files (test_KGML_nographics.KGMLPathwayTest)
Read KGML from, and write KGML to, local files. ... ok
----------------------------------------------------------------------
Ran 1 test in 5.863 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_KeyWList.py
test_KeyWList ... ok
test_parse (test_KeyWList.KeyWListTest)
Parsing keywlist.txt ... ok
test_parse2 (test_KeyWList.KeyWListTest)
Parsing keywlist2.txt (without header and footer) ... ok
----------------------------------------------------------------------
Ran 1 test in 0.117 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_Location.py
test_Location ... ok
runTest (__main__.ComparisonTestCase)
test_Location ... ok
----------------------------------------------------------------------
Ran 1 test in 0.260 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_LogisticRegression.py
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
test_LogisticRegression ... ok
test_calculate_model (test_LogisticRegression.TestLogisticRegression) ... ok
test_calculate_model_with_update_callback (test_LogisticRegression.TestLogisticRegression) ... ok
test_calculate_probability (test_LogisticRegression.TestLogisticRegression) ... ok
test_classify (test_LogisticRegression.TestLogisticRegression) ... ok
test_dimensionality_of_input_xs (test_LogisticRegression.TestLogisticRegression) ... ok
test_leave_one_out (test_LogisticRegression.TestLogisticRegression) ... ok
test_model_accuracy (test_LogisticRegression.TestLogisticRegression) ... ok
test_xs_and_ys_input_parameter_lengths (test_LogisticRegression.TestLogisticRegression) ... ok
test_ys_input_class_assignments (test_LogisticRegression.TestLogisticRegression) ... ok
----------------------------------------------------------------------
Ran 1 test in 0.276 seconds
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_MSAProbs_tool.py
test_MSAProbs_tool ... skipping. Install msaprobs if you want to use MSAProbs from Biopython.
----------------------------------------------------------------------
Ran 1 test in 0.393 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ /usr/bin/python3 run_tests.py --offline -v test_MafIO_index.py
test_MafIO_index ... ok
test_bundle_without_target (test_MafIO_index.NewIndexTest) ... ok
test_good_big (test_MafIO_index.NewIndexTest) ... ok
test_good_small (test_MafIO_index.NewIndexTest) ... ok
test_length_coords_mismatch (test_MafIO_index.NewIndexTest) ... ok
test_old (test_MafIO_index.PreBuiltIndexTest) ... ok
test_old_corrupt_index (test_MafIO_index.PreBuiltIndexTest) ... ok
test_old_file_not_found (test_MafIO_index.PreBuiltIndexTest) ... ok
test_old_invalid_sqlite (test_MafIO_index.PreBuiltIndexTest) ... ok
test_old_unfinished_index (test_MafIO_index.PreBuiltIndexTest) ... ok
test_old_wrong_filename (test_MafIO_index.PreBuiltIndexTest) ... ok
test_old_wrong_target_seqname (test_MafIO_index.PreBuiltIndexTest) ... ok
test_old_wrong_version (test_MafIO_index.PreBuiltIndexTest) ... ok
test_region2bin (test_MafIO_index.StaticMethodTest) ... ok
test_ucscbin (test_MafIO_index.StaticMethodTest) ... ok
test_records_begin (test_MafIO_index.TestGetRecord) ... ok
test_records_end (test_MafIO_index.TestGetRecord) ... ok
test_incorrect_bundle_coords (test_MafIO_index.TestSearchBadMAF) ... ok
test_correct_retrieval_1 (test_MafIO_index.TestSearchGoodMAF) ... ok
test_correct_retrieval_2 (test_MafIO_index.TestSearchGoodMAF) ... ok
test_correct_retrieval_3 (test_MafIO_index.TestSearchGoodMAF) ... ok
test_invalid_exon_count (test_MafIO_index.TestSearchGoodMAF) ... ok
test_invalid_exon_schema (test_MafIO_index.TestSearchGoodMAF) ... ok
test_invalid_type_1 (test_MafIO_index.TestSearchGoodMAF) ... ok
test_invalid_type_2 (test_MafIO_index.TestSearchGoodMAF) ... ok
test_bundle_without_target (test_MafIO_index.TestSpliceBadMAF) ... ok
test_inconsistent_strand (test_MafIO_index.TestSpliceBadMAF) ... ok
test_correct_retrieval_1 (test_MafIO_index.TestSpliceGoodMAF)
Correct retrieval of Cnksr3 in mouse. ... ok
test_invalid_strand (test_MafIO_index.TestSpliceGoodMAF) ... ok
test_no_alignment (test_MafIO_index.TestSpliceGoodMAF) ... ok
----------------------------------------------------------------------
Ran 1 test in 5.179 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_Mafft_tool.py
test_Mafft_tool ... skipping. Install MAFFT if you want to use the Bio.Align.Applications wrapper.
----------------------------------------------------------------------
Ran 1 test in 0.286 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_MarkovModel.py
test_MarkovModel ... ok
test_argmaxes (test_MarkovModel.TestMarkovModel) ... ok
test_backward (test_MarkovModel.TestMarkovModel) ... ok
test_baum_welch (test_MarkovModel.TestMarkovModel) ... ok
test_forward (test_MarkovModel.TestMarkovModel) ... ok
test_logsum_and_exp_logsum (test_MarkovModel.TestMarkovModel) ... ok
test_logvecadd (test_MarkovModel.TestMarkovModel) ... ok
test_mle (test_MarkovModel.TestMarkovModel) ... ok
test_normalize_and_copy_and_check (test_MarkovModel.TestMarkovModel) ... ok
test_random_norm (test_MarkovModel.TestMarkovModel) ... ok
test_readline_and_check_start (test_MarkovModel.TestMarkovModel) ... ok
test_save_and_load (test_MarkovModel.TestMarkovModel) ... ok
test_topcoder1 (test_MarkovModel.TestMarkovModel) ... ok
test_topcoder2 (test_MarkovModel.TestMarkovModel) ... ok
test_topcoder3 (test_MarkovModel.TestMarkovModel) ... ok
test_topcoder4 (test_MarkovModel.TestMarkovModel) ... ok
test_topcoder5 (test_MarkovModel.TestMarkovModel) ... ok
test_train_bw (test_MarkovModel.TestMarkovModel) ... ok
test_train_visible (test_MarkovModel.TestMarkovModel) ... ok
test_uniform_norm (test_MarkovModel.TestMarkovModel) ... ok
test_viterbi (test_MarkovModel.TestMarkovModel) ... ok
----------------------------------------------------------------------
Ran 1 test in 1.205 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_Medline.py
test_Medline ... ok
test_multiline_mesh (test_Medline.TestMedline) ... ok
test_parse (test_Medline.TestMedline) ... ok
test_read (test_Medline.TestMedline) ... ok
----------------------------------------------------------------------
Ran 1 test in 0.032 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ /usr/bin/python3 run_tests.py --offline -v test_Muscle_tool.py
test_Muscle_tool ... skipping. Install MUSCLE if you want to use the Bio.Align.Applications wrapper.
----------------------------------------------------------------------
Ran 1 test in 0.395 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_NACCESS_tool.py
test_NACCESS_tool ... skipping. Install naccess if you want to use it from Biopython.
----------------------------------------------------------------------
Ran 1 test in 0.300 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_NCBITextParser.py
test_NCBITextParser ... ok
test_conversion (test_NCBITextParser.TestBlastRecord)
Test converting a Blast record multiple alignment ... ok
test_text_2010L_blastn_001 (test_NCBITextParser.TestNCBITextParser)
Test parsing BLASTN 2.0.10 output (text_2010L_blastn_001) ... ok
test_text_2010L_blastn_002 (test_NCBITextParser.TestNCBITextParser)
Test parsing BLASTN 2.0.10 output without alignments (text_2010L_blastn_002) ... ok
test_text_2010L_blastn_003 (test_NCBITextParser.TestNCBITextParser)
Test parsing BLASTN 2.0.10 output without descriptions (text_2010L_blastn_003) ... ok
test_text_2010L_blastn_004 (test_NCBITextParser.TestNCBITextParser)
Test parsing BLASTN 2.0.10 output (text_2010L_blastn_004) ... ok
test_text_2010L_blastp_001 (test_NCBITextParser.TestNCBITextParser)
Test parsing BLASTP 2.0.10 output (text_2010L_blastp_001) ... ok
test_text_2010L_blastp_002 (test_NCBITextParser.TestNCBITextParser)
Test parsing BLASTP 2.0.10 output without hits (text_2010L_blastp_002) ... ok
test_text_2010L_blastp_003 (test_NCBITextParser.TestNCBITextParser)
Test parsing BLASTP 2.0.10 output (text_2010L_blastp_003) ... ok
test_text_2010L_blastp_004 (test_NCBITextParser.TestNCBITextParser)
Test parsing BLASTP 2.0.10 output without descriptions (text_2010L_blastp_004) ... ok
test_text_2010L_blastp_005 (test_NCBITextParser.TestNCBITextParser)
Test parsing BLASTP 2.0.10 output without alignments (text_2010L_blastp_005) ... ok
test_text_2010L_blastp_006 (test_NCBITextParser.TestNCBITextParser)
Test parsing BLASTP 2.0.10 output (text_2010L_blastp_006) ... ok
test_text_2010L_blastp_007 (test_NCBITextParser.TestNCBITextParser)
Test parsing BLASTP 2.0.10 output (text_2010L_blastp_007) ... ok
test_text_2010L_blastx_001 (test_NCBITextParser.TestNCBITextParser)
Test parsing BLASTX 2.0.10 output (text_2010L_blastx_001) ... ok
test_text_2010L_blastx_002 (test_NCBITextParser.TestNCBITextParser)
Test parsing BLASTX 2.0.10 output without hits (text_2010L_blastx_002) ... ok
test_text_2010L_phiblast_001 (test_NCBITextParser.TestNCBITextParser)
Test parsing PHI-BLAST, BLASTP 2.0.10 output, one round (text_2010L_phiblast_001) ... ok
test_text_2010L_phiblast_002 (test_NCBITextParser.TestNCBITextParser)
Test parsing PHI-BLAST, BLASTP 2.0.10 output, three rounds (text_2010L_phiblast_002) ... ok
test_text_2010L_phiblast_003 (test_NCBITextParser.TestNCBITextParser)
Test parsing PHI-BLAST, BLASTP 2.0.10 output, two rounds (text_2010L_phiblast_003) ... ok
test_text_2010L_tblastn_001 (test_NCBITextParser.TestNCBITextParser)
Test parsing TBLASTN 2.0.10 output (text_2010L_tblastn_001) ... ok
test_text_2010L_tblastn_002 (test_NCBITextParser.TestNCBITextParser)
Test parsing TBLASTN 2.0.10 output without hits (text_2010L_tblastn_002) ... ok
test_text_2010L_tblastx_001 (test_NCBITextParser.TestNCBITextParser)
Test parsing TBLASTX 2.0.10 output (text_2010L_tblastx_001) ... ok
test_text_2011L_blastn_001 (test_NCBITextParser.TestNCBITextParser)
Test parsing BLASTN 2.0.11 output (text_2011L_blastn_001) ... ok
test_text_2011L_blastn_002 (test_NCBITextParser.TestNCBITextParser)
Test parsing BLASTN 2.0.11 output without alignments (text_2011L_blastn_002) ... ok
test_text_2011L_blastn_003 (test_NCBITextParser.TestNCBITextParser)
Test parsing BLASTN 2.0.11 output without descriptions (text_2011L_blastn_003) ... ok
test_text_2011L_blastn_004 (test_NCBITextParser.TestNCBITextParser)
Test parsing BLASTN 2.0.11 output (text_2011L_blastn_004) ... ok
test_text_2011L_blastp_001 (test_NCBITextParser.TestNCBITextParser)
Test parsing BLASTP 2.0.11 output (text_2011L_blastp_001) ... ok
test_text_2011L_blastp_002 (test_NCBITextParser.TestNCBITextParser)
Test parsing BLASTP 2.0.11 output without hits (text_2011L_blastp_002) ... ok
test_text_2011L_blastp_003 (test_NCBITextParser.TestNCBITextParser)
Test parsing BLASTP 2.0.11 output (text_2011L_blastp_003) ... ok
test_text_2011L_blastp_004 (test_NCBITextParser.TestNCBITextParser)
Test parsing BLASTP 2.0.11 output without descriptions (text_2011L_blastp_004) ... ok
test_text_2011L_blastp_005 (test_NCBITextParser.TestNCBITextParser)
Test parsing BLASTP 2.0.11 output without alignments (text_2011L_blastp_005) ... ok
test_text_2011L_blastp_006 (test_NCBITextParser.TestNCBITextParser)
Test parsing BLASTP 2.0.11 output (text_2011L_blastp_006) ... ok
test_text_2011L_blastp_007 (test_NCBITextParser.TestNCBITextParser)
Test parsing BLASTP 2.0.11 output (text_2011L_blastp_007) ... ok
test_text_2011L_blastx_001 (test_NCBITextParser.TestNCBITextParser)
Test parsing BLASTX 2.0.11 output (text_2011L_blastx_001) ... ok
test_text_2011L_blastx_002 (test_NCBITextParser.TestNCBITextParser)
Test parsing BLASTX 2.0.11 output without hits (text_2011L_blastx_002) ... ok
test_text_2011L_psiblast_001 (test_NCBITextParser.TestNCBITextParser)
Test parsing PHI-BLAST, BLASTP 2.0.11 output, two rounds (text_2011L_psiblast_001) ... ok
test_text_2011L_psiblast_002 (test_NCBITextParser.TestNCBITextParser)
Test parsing PHI-BLAST, BLASTP 2.0.11 output, two rounds (text_2011L_psiblast_002) ... ok
test_text_2011L_psiblast_003 (test_NCBITextParser.TestNCBITextParser)
Test parsing BLASTP 2.0.11 output (text_2011L_psiblast_003) ... ok
test_text_2011L_tblastn_001 (test_NCBITextParser.TestNCBITextParser)
Test parsing TBLASTN 2.0.11 output (text_2011L_tblastn_001) ... ok
test_text_2011L_tblastn_002 (test_NCBITextParser.TestNCBITextParser)
Test parsing TBLASTN 2.0.11 output without hits (text_2011L_tblastn_002) ... ok
test_text_2011L_tblastx_001 (test_NCBITextParser.TestNCBITextParser)
Test parsing TBLASTX 2.0.11 output (text_2011L_tblastx_001) ... ok
test_text_2012L_psiblast_001 (test_NCBITextParser.TestNCBITextParser)
Test parsing BLASTP 2.0.12 output (text_2012L_psiblast_001) ... ok
test_text_2014L_blastn_001 (test_NCBITextParser.TestNCBITextParser)
Test parsing BLASTN 2.0.14 output (text_2014L_blastn_001) ... ok
test_text_2014L_psiblast_001 (test_NCBITextParser.TestNCBITextParser)
Test parsing BLASTP 2.0.14 output (text_2014L_psiblast_001) ... ok
test_text_2201L_blastx_001 (test_NCBITextParser.TestNCBITextParser)
Test parsing BLASTX 2.2.1 output (text_2201L_blastx_001) ... ok
test_text_2202L_blastn_001 (test_NCBITextParser.TestNCBITextParser)
Test parsing BLASTN 2.2.2 output with error messages (text_2202L_blastn_001) ... ok
test_text_2202L_blastn_002 (test_NCBITextParser.TestNCBITextParser)
Test parsing BLASTN 2.2.2 output with missing error messages (text_2202L_blastn_002) ... ok
test_text_2202L_blastp_001 (test_NCBITextParser.TestNCBITextParser)
Test parsing BLASTP 2.2.2 output with multiple records (text_2202L_blastp_001) ... ok
test_text_2208L_psiblast_001 (test_NCBITextParser.TestNCBITextParser)
Test parsing BLASTP 2.2.8 output (text_2208L_psiblast_001) ... ok
test_text_2215L_blastx_001 (test_NCBITextParser.TestNCBITextParser)
Test parsing BLASTX 2.2.15 output with no hits (text_2215L_blastx_001) ... ok
test_text_2216L_tblastn_001 (test_NCBITextParser.TestNCBITextParser)
Test parsing TBLASTN 2.2.16 output (text_2216L_tblastn_001) ... ok
test_text_2220L_blastx_001 (test_NCBITextParser.TestNCBITextParser)
Test parsing BLASTX 2.2.20 output (text_2220L_blastx_001) ... ok
test_text_2220L_blastx_002 (test_NCBITextParser.TestNCBITextParser)
Test parsing BLASTX 2.2.20 output with multiple queries (text_2220L_blastx_002) ... ok
test_text_2221L_blastp_001 (test_NCBITextParser.TestNCBITextParser)
Test parsing BLASTP 2.2.21 output with multiple queries (text_2221L_blastp_001) ... ok
test_text_2222L_blastx_001 (test_NCBITextParser.TestNCBITextParser)
Test parsing BLASTX 2.2.22 output with multiple queries (text_2222L_blastx_001) ... ok
test_text_2222_blastx_001 (test_NCBITextParser.TestNCBITextParser)
Test parsing BLASTX 2.2.22+ output with multiple queries (text_2222_blastx_001) ... ok
test_text_2226_blastn_001 (test_NCBITextParser.TestNCBITextParser)
Test parsing BLASTN 2.2.26+ output with no results. ... ok
test_text_2226_blastn_002 (test_NCBITextParser.TestNCBITextParser)
Test parsing BLASTN 2.2.26+ output with single hsp results. ... ok
test_text_2226_blastn_003 (test_NCBITextParser.TestNCBITextParser)
Test parsing BLASTN 2.2.26+ output with multiple hsp results present. ... ok
test_text_2226_blastp_001 (test_NCBITextParser.TestNCBITextParser)
Test parsing BLASTP 2.2.26+ with no results. ... ok
test_text_2226_blastp_002 (test_NCBITextParser.TestNCBITextParser)
Test parsing BLASTP 2.2.26+ with single hsp results. ... ok
test_text_2226_blastp_003 (test_NCBITextParser.TestNCBITextParser)
Test parsing BLASTP 2.2.26+ with multiple hsp results present. ... ok
test_text_2226_blastx_001 (test_NCBITextParser.TestNCBITextParser)
Test parsing BLASTX 2.2.26+ with no results. ... ok
test_text_2226_blastx_002 (test_NCBITextParser.TestNCBITextParser)
Test parsing BLASTX 2.2.26+ with single hsp results. ... ok
test_text_2226_blastx_003 (test_NCBITextParser.TestNCBITextParser)
Test parsing BLASTP 2.2.26+ with multiple hsp results present. ... ok
test_text_2226_tblastn_001 (test_NCBITextParser.TestNCBITextParser)
Test parsing TBLASTN 2.2.26+ output with no results. ... ok
test_text_2226_tblastn_002 (test_NCBITextParser.TestNCBITextParser)
Test parsing TBLASTN 2.2.26+ output with single hsp results. ... ok
test_text_2226_tblastn_003 (test_NCBITextParser.TestNCBITextParser)
Test parsing TBLASTN 2.2.26+ output with multiple hsp results present. ... ok
test_text_2226_tblastx_001 (test_NCBITextParser.TestNCBITextParser)
Test parsing TBLASTX 2.2.26+ output with no results. ... ok
test_text_2226_tblastx_002 (test_NCBITextParser.TestNCBITextParser)
Test parsing TBLASTX 2.2.26+ output with single hsp results. ... ok
test_text_2226_tblastx_003 (test_NCBITextParser.TestNCBITextParser)
Test parsing TBLASTX 2.2.26+ output with multiple hsp results present. ... ok
test_text_2230_blastp_001 (test_NCBITextParser.TestNCBITextParser)
Test parsing BLASTP 2.2.30+ output with line of dashes. ... ok
----------------------------------------------------------------------
Ran 1 test in 1.977 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_NCBI_BLAST_tools.py
test_NCBI_BLAST_tools ... skipping. Install the NCBI BLAST+ command line tools if you want to use the Bio.Blast.Applications wrapper.
----------------------------------------------------------------------
Ran 1 test in 0.137 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_NCBI_qblast.py
test_NCBI_qblast ... skipping. internet not available
----------------------------------------------------------------------
Ran 1 test in 0.278 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_NNExclusiveOr.py
test_NNExclusiveOr ... ok
runTest (__main__.ComparisonTestCase)
test_NNExclusiveOr ... ok
----------------------------------------------------------------------
Ran 1 test in 1.446 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_NNGene.py
test_NNGene ... ok
test_representation (test_NNGene.MotifCoderTest)
Convert a sequence into its motif representation. ... ok
test_find (test_NNGene.MotifFinderTest)
Find all motifs in a set of sequences. ... ok
test_find_differences (test_NNGene.MotifFinderTest)
Find the difference in motif counts between two sets of sequences. ... ok
test_motif (test_NNGene.PatternIOTest)
Reading and writing motifs to a file ... ok
test_schema (test_NNGene.PatternIOTest)
Reading and writing schemas to a file. ... ok
test_signature (test_NNGene.PatternIOTest)
Reading and writing signatures to a file. ... ok
test_count (test_NNGene.PatternRepositoryTest)
Retrieve counts for particular patterns in the repository. ... ok
test_get_all (test_NNGene.PatternRepositoryTest)
Retrieve all patterns from a repository. ... ok
test_get_differing (test_NNGene.PatternRepositoryTest)
Retrieve patterns from both sides of the list (top and bottom). ... ok
test_get_random (test_NNGene.PatternRepositoryTest)
Retrieve random patterns from the repository. ... ok
test_get_top (test_NNGene.PatternRepositoryTest)
Retrieve a certain number of the top patterns. ... ok
test_get_top_percentage (test_NNGene.PatternRepositoryTest)
Retrieve the top percentge of patterns from the repository. ... ok
test_remove_polyA (test_NNGene.PatternRepositoryTest)
Test the ability to remove A rich patterns from the repository. ... ok
test_representation (test_NNGene.SchemaCoderTest)
Convert a string into a representation of motifs. ... ok
test_easy_from_motifs (test_NNGene.SchemaFactoryTest)
Generating schema from a simple list of motifs. ... ok
test_hard_from_motifs (test_NNGene.SchemaFactoryTest)
Generating schema from a real life set of motifs. ... ok
test_schema_representation (test_NNGene.SchemaFactoryTest)
Convert sequences into schema representations. ... ok
test_find (test_NNGene.SchemaFinderTest)
Find schemas from sequence inputs. ... ok
test_find_differences (test_NNGene.SchemaFinderTest)
Find schemas that differentiate between two sets of sequences. ... ok
runTest (test_NNGene.SchemaMatchingTest)
SchemaMatchingTest:Matching schema to strings works correctly. ... ok
test_all_unambiguous (test_NNGene.SchemaTest)
Return all unambiguous characters that can be in a motif. ... ok
test_find_ambiguous (test_NNGene.SchemaTest)
Find the positions of ambiguous items in a sequence. ... ok
test_find_matches (test_NNGene.SchemaTest)
Find all matches in a sequence. ... ok
test_motif_cache (test_NNGene.SchemaTest)
Make sure motif compiled regular expressions are cached properly. ... ok
test_num_ambiguous (test_NNGene.SchemaTest)
Find the number of ambiguous items in a sequence. ... ok
test_num_matches (test_NNGene.SchemaTest)
Find how many matches are present in a sequence. ... ok
test_representation (test_NNGene.SignatureCoderTest)
Convert a sequence into its signature representation. ... ok
test_find (test_NNGene.SignatureFinderTest)
Find signatures from sequence inputs. ... ok
----------------------------------------------------------------------
Ran 1 test in 0.968 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_NNGeneral.py
test_NNGeneral ... ok
test_adding_examples (test_NNGeneral.ExampleManagerTest)
Make sure test examples are added properly. ... ok
test_partioning_examples (test_NNGeneral.ExampleManagerTest)
Test that we can change how to partition the test examples. ... ok
test_validation_increase_stop (test_NNGeneral.StopTrainingTest)
Stop training when the ValidationExamples increase. ... ok
----------------------------------------------------------------------
Ran 1 test in 0.063 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ /usr/bin/python3 run_tests.py --offline -v test_NaiveBayes.py
test_NaiveBayes ... ok
test_car_data (test_NaiveBayes.CarTest)
Simple example using car data. ... ok
test_calculate_function_with_scale (test_NaiveBayes.NaiveBayesTest) ... ok
test_calculate_function_wrong_dimensionality (test_NaiveBayes.NaiveBayesTest) ... ok
test_classify_function (test_NaiveBayes.NaiveBayesTest) ... ok
test_train_function_input_lengths (test_NaiveBayes.NaiveBayesTest) ... ok
test_train_function_no_training_set (test_NaiveBayes.NaiveBayesTest) ... ok
test_train_function_uneven_dimension_of_training_set (test_NaiveBayes.NaiveBayesTest) ... ok
test_train_function_with_priors (test_NaiveBayes.NaiveBayesTest) ... ok
----------------------------------------------------------------------
Ran 1 test in 0.029 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_PAML_baseml.py
test_PAML_baseml ... ok
testAlignmentExists (test_PAML_baseml.ModTest) ... ok
testAlignmentFileIsValid (test_PAML_baseml.ModTest) ... ok
testAlignmentSpecified (test_PAML_baseml.ModTest) ... ok
testCtlFileExistsOnRead (test_PAML_baseml.ModTest) ... ok
testCtlFileExistsOnRun (test_PAML_baseml.ModTest) ... ok
testCtlFileValidOnRead (test_PAML_baseml.ModTest) ... ok
testCtlFileValidOnRun (test_PAML_baseml.ModTest) ... ok
testOptionExists (test_PAML_baseml.ModTest) ... ok
testOutputFileSpecified (test_PAML_baseml.ModTest) ... ok
testPamlErrorsCaught (test_PAML_baseml.ModTest) ... ok
testParseAllVersions (test_PAML_baseml.ModTest) ... ok
testParseAlpha1Rho1 (test_PAML_baseml.ModTest) ... ok
testParseModel (test_PAML_baseml.ModTest) ... ok
testParseNhomo (test_PAML_baseml.ModTest) ... ok
testParseSEs (test_PAML_baseml.ModTest) ... ok
testResultsExist (test_PAML_baseml.ModTest) ... ok
testResultsParsable (test_PAML_baseml.ModTest) ... ok
testResultsValid (test_PAML_baseml.ModTest) ... ok
testTreeExists (test_PAML_baseml.ModTest) ... ok
testTreeFileValid (test_PAML_baseml.ModTest) ... ok
testTreeSpecified (test_PAML_baseml.ModTest) ... ok
testWorkingDirValid (test_PAML_baseml.ModTest) ... ok
----------------------------------------------------------------------
Ran 1 test in 1.099 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_PAML_codeml.py
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
test_PAML_codeml ... ok
testAlignmentExists (test_PAML_codeml.ModTest) ... ok
testAlignmentFileIsValid (test_PAML_codeml.ModTest) ... ok
testAlignmentSpecified (test_PAML_codeml.ModTest) ... ok
testCtlFileExistsOnRead (test_PAML_codeml.ModTest) ... ok
testCtlFileExistsOnRun (test_PAML_codeml.ModTest) ... ok
testCtlFileValidOnRead (test_PAML_codeml.ModTest) ... ok
testCtlFileValidOnRun (test_PAML_codeml.ModTest) ... ok
testOptionExists (test_PAML_codeml.ModTest) ... ok
testOutputFileSpecified (test_PAML_codeml.ModTest) ... ok
testPamlErrorsCaught (test_PAML_codeml.ModTest) ... ok
testParseAA (test_PAML_codeml.ModTest) ... ok
testParseAAPairwise (test_PAML_codeml.ModTest) ... ok
testParseAllNSsites (test_PAML_codeml.ModTest) ... ok
testParseBranchSiteA (test_PAML_codeml.ModTest) ... ok
testParseCladeModelC (test_PAML_codeml.ModTest) ... ok
testParseFreeRatio (test_PAML_codeml.ModTest) ... ok
testParseM2arel (test_PAML_codeml.ModTest) ... ok
testParseNSsite3 (test_PAML_codeml.ModTest) ... ok
testParseNgene2Mgene02 (test_PAML_codeml.ModTest) ... ok
testParseNgene2Mgene1 (test_PAML_codeml.ModTest) ... ok
testParseNgene2Mgene34 (test_PAML_codeml.ModTest) ... ok
testParsePairwise (test_PAML_codeml.ModTest) ... ok
testParseSEs (test_PAML_codeml.ModTest) ... ok
testParseSitesParamsForPairwise (test_PAML_codeml.ModTest)
Verify that pairwise site estimates are indeed parsed. Fixes #483 ... ok
testResultsExist (test_PAML_codeml.ModTest) ... ok
testResultsParsable (test_PAML_codeml.ModTest) ... ok
testResultsValid (test_PAML_codeml.ModTest) ... ok
testTreeExists (test_PAML_codeml.ModTest) ... ok
testTreeFileValid (test_PAML_codeml.ModTest) ... ok
testTreeParseVersatility (test_PAML_codeml.ModTest)
Test finding trees in the results. ... ok
testTreeSpecified (test_PAML_codeml.ModTest) ... ok
testWorkingDirValid (test_PAML_codeml.ModTest) ... ok
----------------------------------------------------------------------
Ran 1 test in 3.867 seconds
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_PAML_tools.py
test_PAML_tools ... skipping. Install PAML if you want to use the Bio.Phylo.PAML wrapper.
----------------------------------------------------------------------
Ran 1 test in 0.712 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_PAML_yn00.py
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
test_PAML_yn00 ... ok
testAlignmentExists (test_PAML_yn00.ModTest) ... ok
testAlignmentFileIsValid (test_PAML_yn00.ModTest) ... ok
testAlignmentSpecified (test_PAML_yn00.ModTest) ... ok
testCtlFileExistsOnRead (test_PAML_yn00.ModTest) ... ok
testCtlFileExistsOnRun (test_PAML_yn00.ModTest) ... ok
testCtlFileValidOnRead (test_PAML_yn00.ModTest) ... ok
testCtlFileValidOnRun (test_PAML_yn00.ModTest) ... ok
testOptionExists (test_PAML_yn00.ModTest) ... ok
testOutputFileSpecified (test_PAML_yn00.ModTest) ... ok
testParseAllVersions (test_PAML_yn00.ModTest) ... ok
testParseLongNames (test_PAML_yn00.ModTest) ... ok
testResultsExist (test_PAML_yn00.ModTest) ... ok
testResultsParsable (test_PAML_yn00.ModTest) ... ok
testResultsValid (test_PAML_yn00.ModTest) ... ok
testWorkingDirValid (test_PAML_yn00.ModTest) ... ok
----------------------------------------------------------------------
Ran 1 test in 0.760 seconds
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_PDB.py
test_PDB ... ok
test_1_warnings (test_PDB.A_ExceptionTest)
Check warnings: Parse a flawed PDB file in permissive mode. ... ok
test_2_strict (test_PDB.A_ExceptionTest)
Check error: Parse a flawed PDB file in strict mode. ... ok
test_3_bad_xyz (test_PDB.A_ExceptionTest)
Check error: Parse an entry with bad x,y,z value. ... ok
test_4_occupancy (test_PDB.A_ExceptionTest)
Parse file with missing occupancy ... ok
test_AtomElement (test_PDB.Atom_Element)
Atom Element. ... ok
test_hydrogens (test_PDB.Atom_Element) ... ok
test_ions (test_PDB.Atom_Element)
Element for magnesium is assigned correctly. ... ok
test_change_chain_id (test_PDB.ChangingIdTests)
Change the id of a model. ... ok
test_change_model_id (test_PDB.ChangingIdTests)
Change the id of a model. ... ok
test_change_model_id_raises (test_PDB.ChangingIdTests)
Cannot change id to a value already in use by another child. ... ok
test_change_residue_id (test_PDB.ChangingIdTests)
Change the id of a residue. ... ok
test_full_id_is_updated_chain (test_PDB.ChangingIdTests)
Invalidate cached full_ids if an id is changed. ... ok
test_full_id_is_updated_residue (test_PDB.ChangingIdTests)
Invalidate cached full_ids if an id is changed. ... ok
test_atom_copy (test_PDB.CopyTests) ... ok
test_entitity_copy (test_PDB.CopyTests)
Make a copy of a residue. ... ok
test_DSSP_RSA (test_PDB.DsspTests)
Tests the usage of different ASA tables. ... ok
test_DSSP_file (test_PDB.DsspTests)
Test parsing of pregenerated DSSP. ... ok
test_DSSP_hbonds (test_PDB.DsspTests)
Test parsing of DSSP hydrogen bond information. ... ok
test_DSSP_in_model_obj (test_PDB.DsspTests)
All elements correctly added to xtra attribute of input model object. ... ok
test_DSSP_noheader_file (test_PDB.DsspTests)
Test parsing of pregenerated DSSP missing header information. ... ok
test_ExposureCN (test_PDB.Exposure)
HSExposureCN. ... ok
test_HSExposureCA (test_PDB.Exposure)
HSExposureCA. ... ok
test_HSExposureCB (test_PDB.Exposure)
HSExposureCB. ... ok
test_capsid (test_PDB.HeaderTests)
Parse the header of a known PDB file (1A8O). ... ok
test_fibril (test_PDB.HeaderTests)
Parse the header of another PDB file (2BEG). ... ok
test_get_atoms (test_PDB.IterationTests)
Yields all atoms from the structure, excluding duplicates and ALTLOCs which are not parsed. ... ok
test_get_chains (test_PDB.IterationTests)
Yields chains from different models separately. ... ok
test_get_residues (test_PDB.IterationTests)
Yields all residues from all models. ... ok
test_NACCESS_asa_file (test_PDB.NACCESSTests)
Test parsing of pregenerated asa NACCESS file ... ok
test_NACCESS_rsa_file (test_PDB.NACCESSTests)
Test parsing of pregenerated rsa NACCESS file ... ok
test_PDBParser (test_PDB.PDBParserTests)
Walk down the structure hierarchy and test parser reliability. ... ok
test_c_n (test_PDB.ParseReal)
Extract polypeptides from 1A80. ... ok
test_empty (test_PDB.ParseReal)
Parse an empty file. ... ok
test_model_numbering (test_PDB.ParseReal)
Preserve model serial numbers during I/O. ... ok
test_strict (test_PDB.ParseReal)
Parse 1A8O.pdb file in strict mode. ... ok
test_c_n (test_PDB.ParseTest)
Extract polypeptides using C-N. ... ok
test_ca_ca (test_PDB.ParseTest)
Extract polypeptides using CA-CA. ... ok
test_deepcopy_of_structure_with_disorder (test_PDB.ParseTest)
Test deepcopy of a structure with disordered atoms. ... ok
test_details (test_PDB.ParseTest)
Verify details of the parsed example PDB file. ... ok
test_pdbio_write_truncated (test_PDB.ParseTest)
Test parsing of truncated lines. ... ok
test_structure (test_PDB.ParseTest)
Verify the structure of the parsed example PDB file. ... ok
test_pdb_to_xyzr (test_PDB.ResidueDepthTests)
Test generation of xyzr (atomic radii) file ... ok
test_Vector (test_PDB.TransformTests)
Test Vector object. ... ok
test_Vector_angles (test_PDB.TransformTests) ... ok
test_m2rotaxis (test_PDB.TransformTests) ... ok
test_refmat (test_PDB.TransformTests) ... ok
test_rotmat (test_PDB.TransformTests) ... ok
test_transform (test_PDB.TransformTests)
Transform entities (rotation and translation). ... ok
test_pdbio_missing_occupancy (test_PDB.WriteTest)
Write PDB file with missing occupancy. ... ok
test_pdbio_select (test_PDB.WriteTest)
Write a selection of the structure using a Select subclass. ... ok
test_pdbio_write_custom_residue (test_PDB.WriteTest)
Write a chainless residue using PDBIO. ... ok
test_pdbio_write_residue (test_PDB.WriteTest)
Write a single residue using PDBIO ... ok
test_pdbio_write_structure (test_PDB.WriteTest)
Write a full structure using PDBIO. ... ok
----------------------------------------------------------------------
Ran 1 test in 7.163 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_PDBList.py
test_PDBList ... skipping. internet not available
----------------------------------------------------------------------
Ran 1 test in 0.018 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ /usr/bin/python3 run_tests.py --offline -v test_PDB_FragmentMapper.py
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
test_PDB_FragmentMapper ... ok
test_fragment_mapper (test_PDB_FragmentMapper.FragmentMapperTests)
Self test for FragmentMapper module. ... ok
----------------------------------------------------------------------
Ran 1 test in 0.631 seconds
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_PDB_KDTree.py
test_PDB_KDTree ... ok
test_neighbor_search (test_PDB_KDTree.NeighborTest)
NeighborSearch: Find nearby randomly generated coordinates. ... ok
----------------------------------------------------------------------
Ran 1 test in 0.339 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_PDB_MMCIF2Dict.py
test_PDB_MMCIF2Dict ... ok
test_MMCIF2dict (test_PDB_MMCIF2Dict.MMCIF2dictTests) ... ok
----------------------------------------------------------------------
Ran 1 test in 0.969 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ /usr/bin/python3 run_tests.py --offline -v test_PDB_MMCIFParser.py
test_PDB_MMCIFParser ... ok
test_conversion (test_PDB_MMCIFParser.CIFtoPDB)
Parse 1A8O.cif, write 1A8O.pdb, parse again and compare ... ok
testModels (test_PDB_MMCIFParser.ParseReal)
Test file with multiple models ... ok
test_filehandle (test_PDB_MMCIFParser.ParseReal)
Test if the parser can handle file handle as well as filename ... ok
test_insertions (test_PDB_MMCIFParser.ParseReal)
Test file with residue insertion codes ... ok
test_parsers (test_PDB_MMCIFParser.ParseReal)
Extract polypeptides from 1A80. ... ok
test_point_mutations_fast (test_PDB_MMCIFParser.ParseReal)
Test if FastMMCIFParser can parse point mutations correctly. ... ok
test_point_mutations_main (test_PDB_MMCIFParser.ParseReal)
Test if MMCIFParser parse point mutations correctly. ... ok
----------------------------------------------------------------------
Ran 1 test in 16.324 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_PDB_Polypetide.py
test_PDB_Polypetide ... ok
test_polypeptide (test_PDB_Polypetide.PolypeptideTests)
Tests on polypetide class and methods. ... ok
----------------------------------------------------------------------
Ran 1 test in 0.499 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ /usr/bin/python3 run_tests.py --offline -v test_PDB_StructureAlignment.py
test_PDB_StructureAlignment ... /builddir/build/BUILD/python-biopython-1.70/python3/build/lib.linux-aarch64-3.6/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain A is discontinuous at line 13298.
  PDBConstructionWarning)
/builddir/build/BUILD/python-biopython-1.70/python3/build/lib.linux-aarch64-3.6/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain B is discontinuous at line 13344.
  PDBConstructionWarning)
ok
test_StructAlign (test_PDB_StructureAlignment.StructureAlignTests)
Tests on module to align two proteins according to a FASTA alignment file. ... ok
----------------------------------------------------------------------
Ran 1 test in 1.417 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_PDB_Superimposer.py
test_PDB_Superimposer ... ok
test_Superimposer (test_PDB_Superimposer.SuperimposerTests)
Test on module that superimpose two protein structures. ... ok
----------------------------------------------------------------------
Ran 1 test in 0.457 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_ParserSupport.py
test_ParserSupport ... ok
runTest (__main__.ComparisonTestCase)
test_ParserSupport ... ok
----------------------------------------------------------------------
Ran 1 test in 0.117 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_Pathway.py
test_Pathway ... ok
test_Edges (test_Pathway.GraphTestCase) ... ok
test_Equals (test_Pathway.GraphTestCase) ... ok
test_Nodes (test_Pathway.GraphTestCase) ... ok
test_RemoveNode (test_Pathway.GraphTestCase) ... ok
test_Edges (test_Pathway.MultiGraphTestCase) ... ok
test_Equals (test_Pathway.MultiGraphTestCase) ... ok
test_Nodes (test_Pathway.MultiGraphTestCase) ... ok
test_RemoveNode (test_Pathway.MultiGraphTestCase) ... ok
test_eq (test_Pathway.ReactionTestCase) ... ok
test_rev (test_Pathway.ReactionTestCase) ... ok
----------------------------------------------------------------------
Ran 1 test in 0.034 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ /usr/bin/python3 run_tests.py --offline -v test_Phd.py
test_Phd ... ok
test_check_SeqIO (test_Phd.PhdTest454)
Test phd_454 using parser via SeqIO. ... ok
test_check_SeqIO (test_Phd.PhdTestOne)
Test phd1 using parser via SeqIO. ... ok
test_check_record_parser (test_Phd.PhdTestOne)
Test phd1 file in detail. ... ok
test_check_SeqIO (test_Phd.PhdTestSolexa)
Test phd2 using parser via SeqIO. ... ok
test_check_SeqIO (test_Phd.PhdTestTwo)
Test phd2 using parser via SeqIO. ... ok
----------------------------------------------------------------------
Ran 1 test in 0.433 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_PopGen_GenePop.py
test_PopGen_GenePop ... skipping. Install GenePop if you want to use Bio.PopGen.GenePop.
----------------------------------------------------------------------
Ran 1 test in 0.141 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_PopGen_GenePop_EasyController.py
test_PopGen_GenePop_EasyController ... skipping. Install GenePop if you want to use Bio.PopGen.GenePop.
----------------------------------------------------------------------
Ran 1 test in 0.126 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_PopGen_GenePop_nodepend.py
test_PopGen_GenePop_nodepend ... ok
test_file_record_parser (test_PopGen_GenePop_nodepend.FileParserTest)
Basic operation of the File Record Parser. ... ok
test_wrong_file_parser (test_PopGen_GenePop_nodepend.FileParserTest)
Testing the ability to deal with wrongly formatted files. ... ok
test_record_parser (test_PopGen_GenePop_nodepend.ParserTest)
Basic operation of the Record Parser. ... ok
test_wrong_file_parser (test_PopGen_GenePop_nodepend.ParserTest)
Testing the ability to deal with wrongly formatted files. ... ok
test_record_basic (test_PopGen_GenePop_nodepend.RecordTest)
Basic test on Record. ... ok
test_utils (test_PopGen_GenePop_nodepend.UtilsTest)
Basic operation of GenePop Utils. ... ok
----------------------------------------------------------------------
Ran 1 test in 0.056 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_Prank_tool.py
test_Prank_tool ... skipping. Install PRANK if you want to use the Bio.Align.Applications wrapper.
----------------------------------------------------------------------
Ran 1 test in 0.392 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ /usr/bin/python3 run_tests.py --offline -v test_Probcons_tool.py
test_Probcons_tool ... skipping. Install PROBCONS if you want to use the Bio.Align.Applications wrapper.
----------------------------------------------------------------------
Ran 1 test in 0.389 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ /usr/bin/python3 run_tests.py --offline -v test_ProtParam.py
test_ProtParam ... ok
test_aromaticity (test_ProtParam.ProtParamTest)
Test calculating protein aromaticity ... ok
test_count_amino_acids (test_ProtParam.ProtParamTest)
Test getting amino acid counts ... ok
test_flexibility (test_ProtParam.ProtParamTest)
Test calculating protein flexibility ... ok
test_get_amino_acids_percent (test_ProtParam.ProtParamTest)
Test getting amino acid percentage ... ok
test_get_molecular_weight (test_ProtParam.ProtParamTest)
Test calculating protein molecular weight ... ok
test_get_molecular_weight_identical (test_ProtParam.ProtParamTest)
Test calculating the protein molecular weight agrees with calculation from Bio.SeqUtils ... ok
test_get_monoisotopic_molecular_weight (test_ProtParam.ProtParamTest)
Test calculating the monoisotopic molecular weight ... ok
test_get_monoisotopic_molecular_weight_identical (test_ProtParam.ProtParamTest)
Test calculating the protein molecular weight agrees with calculation from Bio.SeqUtils ... ok
test_gravy (test_ProtParam.ProtParamTest)
Test calculating gravy ... ok
test_instability_index (test_ProtParam.ProtParamTest)
Test calculating protein instability index ... ok
test_isoelectric_point (test_ProtParam.ProtParamTest)
Test calculating the isoelectric point ... ok
test_protein_scale (test_ProtParam.ProtParamTest)
Test calculating the Kite Doolittle scale ... ok
test_secondary_structure_fraction (test_ProtParam.ProtParamTest)
Test calculating secondary structure fractions ... ok
----------------------------------------------------------------------
Ran 1 test in 0.294 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_QCPSuperimposer.py
test_QCPSuperimposer ... ok
test_get_init_rms (test_QCPSuperimposer.QCPSuperimposerTest) ... ok
test_get_rms (test_QCPSuperimposer.QCPSuperimposerTest) ... ok
test_get_rotran (test_QCPSuperimposer.QCPSuperimposerTest) ... ok
test_get_transformed (test_QCPSuperimposer.QCPSuperimposerTest) ... ok
test_oldTest (test_QCPSuperimposer.QCPSuperimposerTest) ... ok
test_run (test_QCPSuperimposer.QCPSuperimposerTest) ... ok
test_set (test_QCPSuperimposer.QCPSuperimposerTest) ... ok
----------------------------------------------------------------------
Ran 1 test in 0.304 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_RCSBFormats.py
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
test_RCSBFormats ... ok
test_compare_chains (test_RCSBFormats.CompareStructures)
Compare parsed chains ... ok
test_compare_models (test_RCSBFormats.CompareStructures)
Compared parsed models ... ok
----------------------------------------------------------------------
Ran 1 test in 7.984 seconds
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_Restriction.py
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
test_Restriction ... ok
test_basic_isochizomers (test_Restriction.EnzymeComparison)
Test to be sure isochizomer and neoschizomers are as expected. ... ok
test_comparisons (test_Restriction.EnzymeComparison)
Test comparison operators between different enzymes. ... ok
test_change (test_Restriction.RestrictionBatchPrintTest)
Test that change() changes something. ... ok
test_make_format_map1 (test_Restriction.RestrictionBatchPrintTest)
Test that print_as('map'); print_that() correctly wraps round. ... ok
test_make_format_map2 (test_Restriction.RestrictionBatchPrintTest)
Test that print_as('map'); print_that() correctly wraps round. ... ok
test_make_format_map3 (test_Restriction.RestrictionBatchPrintTest)
Test that print_as('map'); print_that() correctly wraps round. ... ok
test_analysis_restrictions (test_Restriction.RestrictionBatches)
Test Fancier restriction analysis. ... ok
test_batch_analysis (test_Restriction.RestrictionBatches)
Sequence analysis with a restriction batch. ... ok
test_creating_batch (test_Restriction.RestrictionBatches)
Creating and modifying a restriction batch. ... ok
test_premade_batches (test_Restriction.RestrictionBatches)
Test content of premade batches CommOnly, NoComm, AllEnzymes. ... ok
test_search_premade_batches (test_Restriction.RestrictionBatches)
Test search with pre-made batches CommOnly, NoComm, AllEnzymes. ... ok
test_formatted_seq (test_Restriction.SequenceTesting)
Test several methods of FormattedSeq. ... ok
test_non_iupac_letters (test_Restriction.SequenceTesting)
Test if non-IUPAC letters raise a TypeError. ... ok
test_sequence_object (test_Restriction.SequenceTesting)
Test if sequence must be a Seq or MutableSeq object. ... ok
test_circular_sequences (test_Restriction.SimpleEnzyme)
Deal with cutting circular sequences. ... ok
test_cutting_border_positions (test_Restriction.SimpleEnzyme)
Check if cutting after first and penultimate position works. ... ok
test_ear_cutting (test_Restriction.SimpleEnzyme)
Test basic cutting with EarI (ambiguous overhang). ... ok
test_eco_cutting (test_Restriction.SimpleEnzyme)
Test basic cutting with EcoRI (5'overhang). ... ok
test_init (test_Restriction.SimpleEnzyme)
Check for error during __init__. ... ok
test_kpn_cutting (test_Restriction.SimpleEnzyme)
Test basic cutting with KpnI (3'overhang). ... ok
test_recognition_site_on_both_strands (test_Restriction.SimpleEnzyme)
Check if recognition sites on both strands are properly handled. ... ok
test_shortcuts (test_Restriction.SimpleEnzyme)
Check if '/' and '//' work as '.search' and '.catalyse'. ... ok
test_sma_cutting (test_Restriction.SimpleEnzyme)
Test basic cutting with SmaI (blunt cutter). ... ok
test_sna_cutting (test_Restriction.SimpleEnzyme)
Test basic cutting with SnaI (unknown). ... ok
test_print_that (test_Restriction.TestPrintOutputs)
Test print_that function. ... ok
test_str_method (test_Restriction.TestPrintOutputs)
Test __str__ and __repr__ outputs. ... ok
test_supplier (test_Restriction.TestPrintOutputs)
Test output of supplier list for different enzyme types. ... ok
----------------------------------------------------------------------
Ran 1 test in 1.414 seconds
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_SCOP_Astral.py
test_SCOP_Astral ... ok
testConstructWithCustomFile (test_SCOP_Astral.AstralTests) ... ok
testGetDomainsClustered (test_SCOP_Astral.AstralTests) ... ok
testGetDomainsFromFile (test_SCOP_Astral.AstralTests) ... ok
testGetSeq (test_SCOP_Astral.AstralTests) ... ok
----------------------------------------------------------------------
Ran 1 test in 0.412 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_SCOP_Cla.py
test_SCOP_Cla ... ok
testError (test_SCOP_Cla.ClaTests)
Test if a corrupt record raises the appropriate exception ... ok
testIndex (test_SCOP_Cla.ClaTests)
Test CLA file indexing ... ok
testParse (test_SCOP_Cla.ClaTests)
Test if all records in a CLA file are being read ... ok
testRecord (test_SCOP_Cla.ClaTests)
Test one record in detail ... ok
testStr (test_SCOP_Cla.ClaTests)
Test if we can convert each record to a string correctly ... ok
----------------------------------------------------------------------
Ran 1 test in 0.360 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_SCOP_Des.py
test_SCOP_Des ... ok
testError (test_SCOP_Des.DesTests)
Test if a corrupt record raises the appropriate exception ... ok
testParse (test_SCOP_Des.DesTests)
Test if all records in a DES file are being read ... ok
testRecord (test_SCOP_Des.DesTests)
Test one record in detail ... ok
testStr (test_SCOP_Des.DesTests)
Test if we can convert each record to a string correctly ... ok
----------------------------------------------------------------------
Ran 1 test in 0.362 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_SCOP_Dom.py
test_SCOP_Dom ... ok
testError (test_SCOP_Dom.DomTests)
Test if a corrupt record raises the appropriate exception ... ok
testParse (test_SCOP_Dom.DomTests)
Test if all records in a DOM file are being read ... ok
testRecord (test_SCOP_Dom.DomTests)
Test one record in detail ... ok
testStr (test_SCOP_Dom.DomTests)
Test if we can convert each record to a string correctly ... ok
----------------------------------------------------------------------
Ran 1 test in 0.360 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_SCOP_Hie.py
test_SCOP_Hie ... ok
testError (test_SCOP_Hie.HieTests)
Test if a corrupt record raises the appropriate exception ... ok
testParse (test_SCOP_Hie.HieTests)
Test if all records in a HIE file are being read ... ok
testStr (test_SCOP_Hie.HieTests)
Test if we can convert each record to a string correctly ... ok
----------------------------------------------------------------------
Ran 1 test in 0.356 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_SCOP_Raf.py
test_SCOP_Raf ... ok
testParse (test_SCOP_Raf.RafTests)
Can we parse a RAF record? ... ok
testSeqMapAdd (test_SCOP_Raf.RafTests) ... ok
testSeqMapIndex (test_SCOP_Raf.RafTests) ... ok
testSeqMapSlice (test_SCOP_Raf.RafTests) ... ok
test_SeqMap_getAtoms_err (test_SCOP_Raf.RafTests) ... ok
----------------------------------------------------------------------
Ran 1 test in 0.383 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_SCOP_Residues.py
test_SCOP_Residues ... ok
testAstralParse (test_SCOP_Residues.ResiduesTests)
Test if we can parse residue subsets enclosed in brackets ... ok
testJustPdbId (test_SCOP_Residues.ResiduesTests) ... ok
testParse (test_SCOP_Residues.ResiduesTests) ... ok
testParseError (test_SCOP_Residues.ResiduesTests) ... ok
testPdbId (test_SCOP_Residues.ResiduesTests) ... ok
testStr (test_SCOP_Residues.ResiduesTests) ... ok
----------------------------------------------------------------------
Ran 1 test in 0.361 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_SCOP_Scop.py
test_SCOP_Scop ... ok
testConstructFromDirectory (test_SCOP_Scop.ScopTests) ... ok
testGetAscendent (test_SCOP_Scop.ScopTests) ... ok
testParse (test_SCOP_Scop.ScopTests) ... ok
testParseDomain (test_SCOP_Scop.ScopTests) ... ok
testSccsOrder (test_SCOP_Scop.ScopTests) ... ok
test_get_descendents (test_SCOP_Scop.ScopTests)
Test getDescendents method ... ok
----------------------------------------------------------------------
Ran 1 test in 0.369 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_SCOP_online.py
test_SCOP_online ... skipping. internet not available
----------------------------------------------------------------------
Ran 1 test in 0.017 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_SVDSuperimposer.py
test_SVDSuperimposer ... ok
test_get_init_rms (test_SVDSuperimposer.SVDSuperimposerTest) ... ok
test_oldTest (test_SVDSuperimposer.SVDSuperimposerTest) ... ok
----------------------------------------------------------------------
Ran 1 test in 0.023 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ /usr/bin/python3 run_tests.py --offline -v test_SearchIO_blast_tab.py
test_SearchIO_blast_tab ... ok
test_tab_2226_tblastn_001 (test_SearchIO_blast_tab.BlastTabCases)
Test parsing TBLASTN 2.2.26+ tabular output (tab_2226_tblastn_001) ... ok
test_tab_2226_tblastn_002 (test_SearchIO_blast_tab.BlastTabCases)
Test parsing TBLASTN 2.2.26+ tabular output (tab_2226_tblastn_002) ... ok
test_tab_2226_tblastn_003 (test_SearchIO_blast_tab.BlastTabCases)
Test parsing TBLASTN 2.2.26+ tabular output (tab_2226_tblastn_003) ... ok
test_tab_2226_tblastn_004 (test_SearchIO_blast_tab.BlastTabCases)
Test parsing TBLASTN 2.2.26+ tabular output (tab_2226_tblastn_004) ... ok
test_tab_2226_tblastn_005 (test_SearchIO_blast_tab.BlastTabCases)
Test parsing TBLASTN 2.2.26+ tabular output with comments (tab_2226_tblastn_005) ... ok
test_tab_2226_tblastn_006 (test_SearchIO_blast_tab.BlastTabCases)
Test parsing TBLASTN 2.2.26+ tabular output with comments (tab_2226_tblastn_006) ... ok
test_tab_2226_tblastn_007 (test_SearchIO_blast_tab.BlastTabCases)
Test parsing TBLASTN 2.2.26+ tabular output with comments (tab_2226_tblastn_007) ... ok
test_tab_2226_tblastn_008 (test_SearchIO_blast_tab.BlastTabCases)
Test parsing TBLASTN 2.2.26+ tabular output with comments (tab_2226_tblastn_008) ... ok
test_tab_2226_tblastn_009 (test_SearchIO_blast_tab.BlastTabCases)
Test parsing TBLASTN 2.2.26+ tabular output (tab_2226_tblastn_009) ... ok
test_tab_2226_tblastn_010 (test_SearchIO_blast_tab.BlastTabCases)
Test parsing TBLASTN 2.2.26+ tabular output with comments (tab_2226_tblastn_010) ... ok
test_tab_2226_tblastn_011 (test_SearchIO_blast_tab.BlastTabCases)
Test parsing TBLASTN 2.2.26+ tabular output with comments (tab_2226_tblastn_011) ... ok
test_tab_2226_tblastn_012 (test_SearchIO_blast_tab.BlastTabCases)
Test parsing TBLASTN 2.2.26+ tabular output with comments (tab_2226_tblastn_012) ... ok
test_tab_2226_tblastn_013 (test_SearchIO_blast_tab.BlastTabCases)
Test parsing TBLASTN 2.2.26+ tabular output (tab_2226_tblastn_013) ... ok
test_tab_2228_tblastn_001 (test_SearchIO_blast_tab.BlastTabCases)
Test parsing TBLASTN 2.2.28+ tabular output (tab_2228_tblastn_001) ... ok
test_tab_2228_tblastx_001 (test_SearchIO_blast_tab.BlastTabCases)
Test parsing TBLASTX 2.2.28+ tabular output (tab_2228_tblastx_001) ... ok
----------------------------------------------------------------------
Ran 1 test in 0.732 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_SearchIO_blast_tab_index.py
test_SearchIO_blast_tab_index ... ok
test_blasttab_2226_tblastn_001 (test_SearchIO_blast_tab_index.BlastTabIndexCases)
Test blast-tab indexing, BLAST 2.2.26+, multiple queries ... ok
test_blasttab_2226_tblastn_002 (test_SearchIO_blast_tab_index.BlastTabIndexCases)
Test blast-tab indexing, BLAST 2.2.26+, single query, no hits ... ok
test_blasttab_2226_tblastn_004 (test_SearchIO_blast_tab_index.BlastTabIndexCases)
Test blast-tab indexing, BLAST 2.2.26+, single query, multiple hits ... ok
test_blasttab_2226_tblastn_005 (test_SearchIO_blast_tab_index.BlastTabIndexCases)
Test blast-tab indexing, BLAST 2.2.26+, multiple queries, commented ... ok
test_blasttab_2226_tblastn_006 (test_SearchIO_blast_tab_index.BlastTabIndexCases)
Test blast-tab indexing, BLAST 2.2.26+, single query, no hits, commented ... ok
test_blasttab_2226_tblastn_009 (test_SearchIO_blast_tab_index.BlastTabIndexCases)
Test blast-tab indexing, BLAST 2.2.26+, custom columns ... ok
test_blasttab_2226_tblastn_010 (test_SearchIO_blast_tab_index.BlastTabIndexCases)
Test blast-tab indexing, BLAST 2.2.26+, custom columns, commented ... ok
test_blasttab_2226_tblastn_011 (test_SearchIO_blast_tab_index.BlastTabIndexCases)
Test blast-tab indexing, BLAST 2.2.26+, all columns, commented ... ok
test_blasttab_comment_sing (test_SearchIO_blast_tab_index.BlastTabIndexCases)
Test blast-tab indexing, BLAST 2.2.26+, single query, multiple hits, commented ... ok
test_blasttab_2226_multiple_first (test_SearchIO_blast_tab_index.BlastTabRawCases)
Test blast-tab raw string retrieval, BLAST 2.2.26+, multiple queries, first (tab_2226_tblastn_001.txt) ... ok
test_blasttab_2226_multiple_first_commented (test_SearchIO_blast_tab_index.BlastTabRawCases)
Test blast-tab raw string retrieval, BLAST 2.2.26+, multiple queries, first, commented (tab_2226_tblastn_005.txt) ... ok
test_blasttab_2226_multiple_last (test_SearchIO_blast_tab_index.BlastTabRawCases)
Test blast-tab raw string retrieval, BLAST 2.2.26+, multiple queries, last (tab_2226_tblastn_001.txt) ... ok
test_blasttab_2226_multiple_last_commented (test_SearchIO_blast_tab_index.BlastTabRawCases)
Test blast-tab raw string retrieval, BLAST 2.2.26+, multiple queries, last, commented (tab_2226_tblastn_005.txt) ... ok
test_blasttab_2226_multiple_middle_commented (test_SearchIO_blast_tab_index.BlastTabRawCases)
Test blast-tab raw string retrieval, BLAST 2.2.26+, multiple queries, middle, commented (tab_2226_tblastn_005.txt) ... ok
test_blasttab_2226_single (test_SearchIO_blast_tab_index.BlastTabRawCases)
Test blast-tab raw string retrieval, BLAST 2.2.26+, single query (tab_2226_tblastn_004.txt) ... ok
test_blasttab_2226_single_commented (test_SearchIO_blast_tab_index.BlastTabRawCases)
Test blast-tab raw string retrieval, BLAST 2.2.26+, single query, commented (tab_2226_tblastn_008.txt) ... ok
----------------------------------------------------------------------
Ran 1 test in 0.564 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_SearchIO_blast_text.py
test_SearchIO_blast_text ... ok
test_text_2226_blastn_001 (test_SearchIO_blast_text.BlastnCases)
Test parsing blastn output (text_2226_blastn_001.txt) ... ok
test_text_2226_blastn_002 (test_SearchIO_blast_text.BlastnCases)
Test parsing blastn output (text_2226_blastn_002.txt) ... ok
test_text_2226_blastn_003 (test_SearchIO_blast_text.BlastnCases)
Test parsing blastn output (text_2226_blastn_003.txt) ... ok
test_text_2226_blastn_004 (test_SearchIO_blast_text.BlastnCases)
Test parsing blastn output (text_2226_blastn_004.txt) ... ok
test_text_2226_blastp_001 (test_SearchIO_blast_text.BlastpCases)
Test parsing blastp output (text_2226_blastp_001.txt) ... ok
test_text_2226_blastp_002 (test_SearchIO_blast_text.BlastpCases)
Test parsing blastp output (text_2226_blastp_002.txt) ... ok
test_text_2226_blastp_003 (test_SearchIO_blast_text.BlastpCases)
Test parsing blastp output (text_2226_blastp_003.txt) ... ok
test_text_2226_blastp_004 (test_SearchIO_blast_text.BlastpCases)
Test parsing blastp output (text_2226_blastp_004.txt) ... ok
test_text_2226_blastx_001 (test_SearchIO_blast_text.BlastxCases)
Test parsing blastx output (text_2226_blastx_001.txt) ... ok
test_text_2226_blastx_002 (test_SearchIO_blast_text.BlastxCases)
Test parsing blastx output (text_2226_blastx_002.txt) ... ok
test_text_2226_blastx_003 (test_SearchIO_blast_text.BlastxCases)
Test parsing blastx output (text_2226_blastx_003.txt) ... ok
test_text_2226_blastx_004 (test_SearchIO_blast_text.BlastxCases)
Test parsing blastx output (text_2226_blastx_004.txt) ... ok
test_text_2226_tblastn_001 (test_SearchIO_blast_text.TblastnCases)
Test parsing tblastn output (text_2226_tblastn_001.txt) ... ok
test_text_2226_tblastn_002 (test_SearchIO_blast_text.TblastnCases)
Test parsing tblastn output (text_2226_tblastn_002.txt) ... ok
test_text_2226_tblastn_003 (test_SearchIO_blast_text.TblastnCases)
Test parsing tblastn output (text_2226_tblastn_003.txt) ... ok
test_text_2226_tblastn_004 (test_SearchIO_blast_text.TblastnCases)
Test parsing tblastn output (text_2226_tblastn_004.txt) ... ok
test_text_2226_tblastx_001 (test_SearchIO_blast_text.TblastxCases)
Test parsing tblastx output (text_2226_tblastx_001.txt) ... ok
test_text_2226_tblastx_002 (test_SearchIO_blast_text.TblastxCases)
Test parsing tblastx output (text_2226_tblastx_002.txt) ... ok
test_text_2226_tblastx_003 (test_SearchIO_blast_text.TblastxCases)
Test parsing tblastx output (text_2226_tblastx_003.txt) ... ok
test_text_2226_tblastx_004 (test_SearchIO_blast_text.TblastxCases)
Test parsing tblastx output (text_2226_tblastx_004.txt) ... ok
test_text_2230_blastp_001 (test_SearchIO_blast_text.TblastxCases)
Test parsing blastp output (text_2230_blastp_001.txt) ... ok
----------------------------------------------------------------------
Ran 1 test in 0.811 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_SearchIO_blast_xml.py
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
test_SearchIO_blast_xml ... ok
test_xml_2226_blastn_006 (test_SearchIO_blast_xml.BlastXmlSpecialCases) ... ok
test_xml_2226_blastn_006_use_raw_hit_ids (test_SearchIO_blast_xml.BlastXmlSpecialCases) ... ok
test_xml_2226_blastn_006_use_raw_query_ids (test_SearchIO_blast_xml.BlastXmlSpecialCases) ... ok
test_xml_2212L_blastn_001 (test_SearchIO_blast_xml.BlastnXmlCases) ... ok
test_xml_2226_blastn_001 (test_SearchIO_blast_xml.BlastnXmlCases) ... ok
test_xml_2226_blastn_002 (test_SearchIO_blast_xml.BlastnXmlCases) ... ok
test_xml_2226_blastn_003 (test_SearchIO_blast_xml.BlastnXmlCases) ... ok
test_xml_2226_blastn_004 (test_SearchIO_blast_xml.BlastnXmlCases) ... ok
test_xml_2226_blastn_005 (test_SearchIO_blast_xml.BlastnXmlCases) ... ok
test_xml_2212L_blastp_001 (test_SearchIO_blast_xml.BlastpXmlCases) ... ok
test_xml_2218L_blastp_001 (test_SearchIO_blast_xml.BlastpXmlCases) ... ok
test_xml_2218_blastp_001 (test_SearchIO_blast_xml.BlastpXmlCases) ... ok
test_xml_2218_blastp_002 (test_SearchIO_blast_xml.BlastpXmlCases) ... ok
test_xml_2222_blastp_001 (test_SearchIO_blast_xml.BlastpXmlCases) ... ok
test_xml_2226_blastp_001 (test_SearchIO_blast_xml.BlastpXmlCases) ... ok
test_xml_2226_blastp_002 (test_SearchIO_blast_xml.BlastpXmlCases) ... ok
test_xml_2226_blastp_003 (test_SearchIO_blast_xml.BlastpXmlCases) ... ok
test_xml_2226_blastp_004 (test_SearchIO_blast_xml.BlastpXmlCases) ... ok
test_xml_2226_blastp_005 (test_SearchIO_blast_xml.BlastpXmlCases) ... ok
test_xml_2212L_blastx_001 (test_SearchIO_blast_xml.BlastxXmlCases) ... ok
test_xml_2222_blastx_001 (test_SearchIO_blast_xml.BlastxXmlCases) ... ok
test_xml_2226_blastx_001 (test_SearchIO_blast_xml.BlastxXmlCases) ... ok
test_xml_2226_blastx_002 (test_SearchIO_blast_xml.BlastxXmlCases) ... ok
test_xml_2226_blastx_003 (test_SearchIO_blast_xml.BlastxXmlCases) ... ok
test_xml_2226_blastx_004 (test_SearchIO_blast_xml.BlastxXmlCases) ... ok
test_xml_2212L_tblastn_001 (test_SearchIO_blast_xml.TblastnXmlCases) ... ok
test_xml_2226_tblastn_001 (test_SearchIO_blast_xml.TblastnXmlCases) ... ok
test_xml_2226_tblastn_002 (test_SearchIO_blast_xml.TblastnXmlCases) ... ok
test_xml_2226_tblastn_003 (test_SearchIO_blast_xml.TblastnXmlCases) ... ok
test_xml_2226_tblastn_004 (test_SearchIO_blast_xml.TblastnXmlCases) ... ok
test_xml_2226_tblastn_005 (test_SearchIO_blast_xml.TblastnXmlCases) ... ok
test_xml_2212L_tblastx_001 (test_SearchIO_blast_xml.TblastxXmlCases) ... ok
test_xml_2226_tblastx_001 (test_SearchIO_blast_xml.TblastxXmlCases) ... ok
test_xml_2226_tblastx_002 (test_SearchIO_blast_xml.TblastxXmlCases) ... ok
test_xml_2226_tblastx_003 (test_SearchIO_blast_xml.TblastxXmlCases) ... ok
test_xml_2226_tblastx_004 (test_SearchIO_blast_xml.TblastxXmlCases) ... ok
----------------------------------------------------------------------
Ran 1 test in 1.330 seconds
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_SearchIO_blast_xml_index.py
test_SearchIO_blast_xml_index ... ok
test_blastxml_2212L_blastp_001 (test_SearchIO_blast_xml_index.BlastXmlIndexCases)
Test blast-xml indexing, BLAST 2.2.12 ... ok
test_blastxml_2218_blastp_001 (test_SearchIO_blast_xml_index.BlastXmlIndexCases)
Test blast-xml indexing, BLAST 2.2.18+ ... ok
test_blastxml_2222_blastx_001 (test_SearchIO_blast_xml_index.BlastXmlIndexCases)
Test blast-xml indexing, BLAST 2.2.22+ ... ok
test_blastxml_2226_tblastn_001 (test_SearchIO_blast_xml_index.BlastXmlIndexCases)
Test blast-xml indexing, BLAST 2.2.26+, multiple queries ... ok
test_blastxml_2226_tblastn_002 (test_SearchIO_blast_xml_index.BlastXmlIndexCases)
Test blast-xml indexing, BlAST 2.2.26+, single query, no hits ... ok
test_blastxml_2226_tblastn_004 (test_SearchIO_blast_xml_index.BlastXmlIndexCases)
Test blast-xml indexing, BLAST 2.2.26+, single query, multiple hits ... ok
test_blastxml_2226_multiple_first (test_SearchIO_blast_xml_index.BlastXmlRawCases)
Test blast-xml raw string retrieval, BLAST 2.2.26+, multiple queries, first (xml_2226_blastp_001.xml) ... ok
test_blastxml_2226_multiple_last (test_SearchIO_blast_xml_index.BlastXmlRawCases)
Test blast-xml raw string retrieval, BLAST 2.2.26+, multiple queries, last (xml_2226_blastp_001.xml) ... ok
test_blastxml_2226_multiple_middle (test_SearchIO_blast_xml_index.BlastXmlRawCases)
Test blast-xml raw string retrieval, BLAST 2.2.26+, multiple queries, middle (xml_2226_blastp_001.xml) ... ok
test_blastxml_2226_single (test_SearchIO_blast_xml_index.BlastXmlRawCases)
Test blast-xml raw string retrieval, BLAST 2.2.26+, single query (xml_2226_blastp_004.xml) ... ok
----------------------------------------------------------------------
Ran 1 test in 3.753 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_SearchIO_blat_psl.py
test_SearchIO_blat_psl ... ok
test_psl_34_001 (test_SearchIO_blat_psl.BlatPslCases)
Test parsing blat output (psl_34_001.psl) ... ok
test_psl_34_002 (test_SearchIO_blat_psl.BlatPslCases)
Test parsing blat output (psl_34_001.psl) ... ok
test_psl_34_003 (test_SearchIO_blat_psl.BlatPslCases)
Test parsing blat output (psl_34_003.psl) ... ok
test_psl_34_004 (test_SearchIO_blat_psl.BlatPslCases)
Test parsing blat output (psl_34_004.psl) ... ok
test_psl_34_005 (test_SearchIO_blat_psl.BlatPslCases)
Test parsing blat output (psl_34_005.psl) ... ok
test_psl_35_001 (test_SearchIO_blat_psl.BlatPslCases)
Test parsing blat output (psl_35_001.psl) ... ok
test_psl_35_002 (test_SearchIO_blat_psl.BlatPslCases)
Test parsing blat output (psl_35_002.psl) ... ok
test_psl_34_001 (test_SearchIO_blat_psl.BlatPslxCases)
Test parsing blat output (psl_34_001.psl) ... ok
test_psl_34_002 (test_SearchIO_blat_psl.BlatPslxCases)
Test parsing blat output (psl_34_001.psl) ... ok
test_psl_34_003 (test_SearchIO_blat_psl.BlatPslxCases)
Test parsing blat output (psl_34_003.psl) ... ok
test_psl_34_004 (test_SearchIO_blat_psl.BlatPslxCases)
Test parsing blat output (psl_34_004.psl) ... ok
test_psl_34_005 (test_SearchIO_blat_psl.BlatPslxCases)
Test parsing blat output (psl_34_005.psl) ... ok
test_psl_35_001 (test_SearchIO_blat_psl.BlatPslxCases)
Test parsing blat output (psl_35_001.psl) ... ok
test_psl_35_002 (test_SearchIO_blat_psl.BlatPslxCases)
Test parsing blat output (psl_35_002.psl) ... ok
test_pslx_34_001 (test_SearchIO_blat_psl.BlatPslxCases)
Test parsing blat output (pslx_34_001.pslx) ... ok
test_pslx_34_002 (test_SearchIO_blat_psl.BlatPslxCases)
Test parsing blat output (pslx_34_002.pslx) ... ok
test_pslx_34_003 (test_SearchIO_blat_psl.BlatPslxCases)
Test parsing blat output (pslx_34_003.pslx) ... ok
test_pslx_34_004 (test_SearchIO_blat_psl.BlatPslxCases)
Test parsing blat output (pslx_34_004.pslx) ... ok
test_pslx_34_005 (test_SearchIO_blat_psl.BlatPslxCases)
Test parsing blat output (pslx_34_005.pslx) ... ok
test_pslx_35_002 (test_SearchIO_blat_psl.BlatPslxCases)
Test parsing blat output (pslx_35_002.pslx) ... ok
----------------------------------------------------------------------
Ran 1 test in 0.561 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_SearchIO_blat_psl_index.py
test_SearchIO_blat_psl_index ... ok
test_psl_34_001 (test_SearchIO_blat_psl_index.BlatPslIndexCases)
Test blat-psl indexing, multiple queries ... ok
test_psl_34_002 (test_SearchIO_blat_psl_index.BlatPslIndexCases)
Test blat-psl indexing, single query, no hits ... ok
test_psl_34_003 (test_SearchIO_blat_psl_index.BlatPslIndexCases)
Test blat-psl indexing, single query, single hit ... ok
test_psl_34_004 (test_SearchIO_blat_psl_index.BlatPslIndexCases)
Test blat-psl indexing, single query, multiple hits with multiple hsps ... ok
test_psl_34_005 (test_SearchIO_blat_psl_index.BlatPslIndexCases)
Test blat-psl indexing, multiple queries, no header ... ok
test_psl_34_006 (test_SearchIO_blat_psl_index.BlatPslIndexCases)
Test blat-pslx indexing, multiple queries ... ok
test_psl_34_007 (test_SearchIO_blat_psl_index.BlatPslIndexCases)
Test blat-pslx indexing, single query, no hits ... ok
test_psl_34_008 (test_SearchIO_blat_psl_index.BlatPslIndexCases)
Test blat-pslx indexing, single query, single hit ... ok
test_psl_34_009 (test_SearchIO_blat_psl_index.BlatPslIndexCases)
Test blat-pslx indexing, single query, multiple hits with multiple hsps ... ok
test_psl_34_010 (test_SearchIO_blat_psl_index.BlatPslIndexCases)
Test blat-pslx indexing, multiple queries, no header ... ok
----------------------------------------------------------------------
Ran 1 test in 0.706 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_SearchIO_exonerate.py
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
test_SearchIO_exonerate ... ok
test_exn_22_o_vulgar_cigar (test_SearchIO_exonerate.ExonerateCigarCases)
Test parsing exonerate output (exn_22_o_vulgar_cigar.exn) ... ok
test_vulgar_text_similar_c2c (test_SearchIO_exonerate.ExonerateSpcCases)
Compares vulgar-text coordinate parsing for the coding2coding model. ... ok
test_vulgar_text_similar_g2g (test_SearchIO_exonerate.ExonerateSpcCases)
Compares vulgar-text coordinate parsing for the genome2genome model. ... ok
test_vulgar_text_similar_p2d (test_SearchIO_exonerate.ExonerateSpcCases)
Compares vulgar-text coordinate parsing for the protein2dna model. ... ok
test_exn_22_m_affine_local (test_SearchIO_exonerate.ExonerateTextCases)
Test parsing exonerate output (exn_22_m_affine_local.exn) ... ok
test_exn_22_m_cdna2genome (test_SearchIO_exonerate.ExonerateTextCases)
Test parsing exonerate output (exn_22_m_cdna2genome.exn) ... ok
test_exn_22_m_coding2coding (test_SearchIO_exonerate.ExonerateTextCases)
Test parsing exonerate output (exn_22_m_coding2coding.exn) ... ok
test_exn_22_m_coding2coding_fshifts (test_SearchIO_exonerate.ExonerateTextCases)
Test parsing exonerate output (exn_22_m_coding2coding_fshifts.exn) ... ok
test_exn_22_m_coding2genome (test_SearchIO_exonerate.ExonerateTextCases)
Test parsing exonerate output (exn_22_m_coding2genome.exn) ... ok
test_exn_22_m_dna2protein (test_SearchIO_exonerate.ExonerateTextCases)
Test parsing exonerate output (exn_22_m_dna2protein.exn) ... ok
test_exn_22_m_est2genome (test_SearchIO_exonerate.ExonerateTextCases)
Test parsing exonerate output (exn_22_m_est2genome.exn) ... ok
test_exn_22_m_genome2genome (test_SearchIO_exonerate.ExonerateTextCases)
Test parsing exonerate output (exn_22_m_genome2genome.exn) ... ok
test_exn_22_m_ner (test_SearchIO_exonerate.ExonerateTextCases)
Test parsing exonerate output (exn_22_m_ner.exn) ... ok
test_exn_22_m_protein2dna_fshifts (test_SearchIO_exonerate.ExonerateTextCases)
Test parsing exonerate output (exn_22_m_protein2dna_fshifts.exn) ... ok
test_exn_22_m_protein2genome (test_SearchIO_exonerate.ExonerateTextCases)
Test parsing exonerate output (exn_22_m_protein2genome.exn) ... ok
test_exn_22_m_ungapped (test_SearchIO_exonerate.ExonerateTextCases)
Test parsing exonerate output (exn_22_m_ungapped.exn) ... ok
test_exn_22_m_ungapped_trans (test_SearchIO_exonerate.ExonerateTextCases)
Test parsing exonerate output (exn_22_m_ungapped_trans.exn) ... ok
test_exn_22_q_multiple (test_SearchIO_exonerate.ExonerateTextCases)
Test parsing exonerate output (exn_22_q_multiple.exn) ... ok
test_exn_22_q_none (test_SearchIO_exonerate.ExonerateTextCases)
Test parsing exonerate output (exn_22_q_none.exn) ... ok
test_exn_22_o_vulgar (test_SearchIO_exonerate.ExonerateVulgarCases)
Test parsing exonerate output (exn_22_o_vulgar.exn) ... ok
test_exn_22_o_vulgar_fshifts (test_SearchIO_exonerate.ExonerateVulgarCases)
Test parsing exonerate output (exn_22_o_vulgar_fshifts.exn) ... ok
----------------------------------------------------------------------
Ran 1 test in 0.705 seconds
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_SearchIO_exonerate_text_index.py
test_SearchIO_exonerate_text_index ... ok
test_exn_22_m_est2genome (test_SearchIO_exonerate_text_index.ExonerateTextIndexCases)
Test exonerate-text indexing, single ... ok
test_exn_22_q_multiple (test_SearchIO_exonerate_text_index.ExonerateTextIndexCases)
Test exonerate-text indexing, single ... ok
----------------------------------------------------------------------
Ran 1 test in 0.417 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_SearchIO_exonerate_vulgar_index.py
test_SearchIO_exonerate_vulgar_index ... ok
test_exn_22_m_est2genome (test_SearchIO_exonerate_vulgar_index.ExonerateVulgarIndexCases)
Test exonerate-vulgar indexing, single ... ok
test_exn_22_q_multiple (test_SearchIO_exonerate_vulgar_index.ExonerateVulgarIndexCases)
Test exonerate-vulgar indexing, single ... ok
----------------------------------------------------------------------
Ran 1 test in 0.355 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_SearchIO_fasta_m10.py
test_SearchIO_fasta_m10 ... ok
test_output002 (test_SearchIO_fasta_m10.Fasta34Cases)
Test parsing fasta34 output (output002.m10) ... ok
test_output003 (test_SearchIO_fasta_m10.Fasta34Cases)
Test parsing fasta34 output (output003.m10) ... ok
test_output001 (test_SearchIO_fasta_m10.Fasta35Cases)
Test parsing fasta35 output (output001.m10) ... ok
test_output004 (test_SearchIO_fasta_m10.Fasta35Cases)
Test parsing fasta35 output (output004.m10) ... ok
test_output005 (test_SearchIO_fasta_m10.Fasta35Cases)
Test parsing ssearch35 output (output005.m10) ... ok
test_output006 (test_SearchIO_fasta_m10.Fasta35Cases)
Test parsing fasta35 output (output006.m10) ... ok
test_output007 (test_SearchIO_fasta_m10.Fasta36Cases)
Test parsing fasta36 output (output007.m10) ... ok
test_output008 (test_SearchIO_fasta_m10.Fasta36Cases)
Test parsing tfastx36 output (output008.m10) ... ok
test_output009 (test_SearchIO_fasta_m10.Fasta36Cases)
Test parsing fasta36 output (output009.m10) ... ok
test_output010 (test_SearchIO_fasta_m10.Fasta36Cases)
Test parsing fasta36 output (output010.m10) ... ok
test_output011 (test_SearchIO_fasta_m10.Fasta36Cases)
Test parsing fasta36 output (output011.m10) ... ok
test_output012 (test_SearchIO_fasta_m10.Fasta36Cases)
Test parsing fasta36 output (output012.m10) ... ok
test_output013 (test_SearchIO_fasta_m10.Fasta36Cases)
Test parsing fasta36 output (output013.m10) ... ok
test_output014 (test_SearchIO_fasta_m10.Fasta36Cases)
Test parsing fasta36 output (output014.m10) ... ok
test_output015 (test_SearchIO_fasta_m10.Fasta36Cases)
Test parsing fasta36 output (output015.m10) ... ok
test_output016 (test_SearchIO_fasta_m10.Fasta36Cases)
Test parsing fasta36 output (output016.m10) ... ok
----------------------------------------------------------------------
Ran 1 test in 0.574 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_SearchIO_fasta_m10_index.py
test_SearchIO_fasta_m10_index ... ok
test_output_001 (test_SearchIO_fasta_m10_index.FastaM10IndexCases)
Test fasta-m10 indexing, fasta35, multiple queries ... ok
test_output_002 (test_SearchIO_fasta_m10_index.FastaM10IndexCases)
Test fasta-m10 indexing, fasta34, multiple queries ... ok
test_output_005 (test_SearchIO_fasta_m10_index.FastaM10IndexCases)
Test fasta-m10 indexing, ssearch35, multiple queries ... ok
test_output_008 (test_SearchIO_fasta_m10_index.FastaM10IndexCases)
Test fasta-m10 indexing, tfastx36, multiple queries ... ok
test_output_009 (test_SearchIO_fasta_m10_index.FastaM10IndexCases)
Test fasta-m10 indexing, fasta36, multiple queries ... ok
test_output_010 (test_SearchIO_fasta_m10_index.FastaM10IndexCases)
Test fasta-m10 indexing, fasta36, single query, no hits ... ok
test_output_011 (test_SearchIO_fasta_m10_index.FastaM10IndexCases)
Test fasta-m10 indexing, fasta36, single query, hits with single hsp ... ok
test_output_012 (test_SearchIO_fasta_m10_index.FastaM10IndexCases)
Test fasta-m10 indexing, fasta36, single query with multiple hsps ... ok
----------------------------------------------------------------------
Ran 1 test in 0.791 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_SearchIO_hmmer2_text.py
test_SearchIO_hmmer2_text ... ok
test_hmmpfam_21 (test_SearchIO_hmmer2_text.HmmpfamTests)
Test parsing hmmpfam 2.1 file (text_21_hmmpfam_001.out) ... ok
test_hmmpfam_22 (test_SearchIO_hmmer2_text.HmmpfamTests)
Test parsing hmmpfam 2.2 file (text_22_hmmpfam_001.out) ... ok
test_hmmpfam_23 (test_SearchIO_hmmer2_text.HmmpfamTests)
Test parsing hmmpfam 2.3 file (text_23_hmmpfam_001.out) ... ok
test_hmmpfam_23_missing_consensus (test_SearchIO_hmmer2_text.HmmpfamTests)
Test parsing hmmpfam 2.3 file (text_23_hmmpfam_003.out) ... ok
test_hmmpfam_23_no_match (test_SearchIO_hmmer2_text.HmmpfamTests)
Test parsing hmmpfam 2.3 file (text_23_hmmpfam_002.out) ... ok
test_hmmpfam_24 (test_SearchIO_hmmer2_text.HmmpfamTests)
Test parsing hmmpfam 2.4 file (text_24_hmmpfam_001.out) ... ok
test_hmmsearch_20 (test_SearchIO_hmmer2_text.HmmsearchTests)
Test parsing hmmsearch 2.0 file (text_20_hmmsearch_001.out) ... ok
test_hmmsearch_22 (test_SearchIO_hmmer2_text.HmmsearchTests)
Test parsing hmmsearch 2.2 file (text_22_hmmsearch_001.out) ... ok
----------------------------------------------------------------------
Ran 1 test in 1.216 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_SearchIO_hmmer2_text_index.py
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
test_SearchIO_hmmer2_text_index ... ok
test_hmmertext_text_21_hmmpfam_001 (test_SearchIO_hmmer2_text_index.Hmmer2TextIndexCases)
Test hmmer2-text indexing, HMMER 2.1 ... ok
test_hmmertext_text_22_hmmpfam_001 (test_SearchIO_hmmer2_text_index.Hmmer2TextIndexCases)
Test hmmer2-text indexing, HMMER 2.2 ... ok
test_hmmertext_text_22_hmmsearch_001 (test_SearchIO_hmmer2_text_index.Hmmer2TextIndexCases)
Test hmmer2-text indexing, HMMER 2.2 ... ok
test_hmmertext_text_23_hmmpfam_001 (test_SearchIO_hmmer2_text_index.Hmmer2TextIndexCases)
Test hmmer2-text indexing, HMMER 2.3 ... ok
test_hmmertext_text_24_hmmpfam_001 (test_SearchIO_hmmer2_text_index.Hmmer2TextIndexCases)
Test hmmer2-text indexing, HMMER 2.4 ... ok
test_hmmer2text_22_multiple_first_hmmpfam (test_SearchIO_hmmer2_text_index.Hmmer2TextRawCases)
Test hmmer2-text raw string retrieval, multiple queries, hmmpfam ... ok
test_hmmer2text_22_multiple_last_hmmpfam (test_SearchIO_hmmer2_text_index.Hmmer2TextRawCases)
Test hmmer2-text raw string retrieval, multiple queries, hmmpfam ... ok
test_hmmer2text_22_multiple_middle_hmmpfam (test_SearchIO_hmmer2_text_index.Hmmer2TextRawCases)
Test hmmer2-text raw string retrieval, multiple queries, hmmpfam ... ok
test_hmmer2text_22_single_hmmpfam (test_SearchIO_hmmer2_text_index.Hmmer2TextRawCases)
Test hmmer2-text raw string retrieval, single query, hmmpfam ... ok
test_hmmer2text_22_single_hmmsearch (test_SearchIO_hmmer2_text_index.Hmmer2TextRawCases)
Test hmmer2-text raw string retrieval, single query, hmmsearch ... ok
----------------------------------------------------------------------
Ran 1 test in 0.699 seconds
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_SearchIO_hmmer3_domtab.py
test_SearchIO_hmmer3_domtab ... ok
test_domtab_30_hmmsearch_001 (test_SearchIO_hmmer3_domtab.HmmersearchCases)
Test parsing hmmsearch-domtab, hmmsearch 3.0, multiple queries (domtab_30_hmmsearch_001) ... ok
test_domtab_31b1_hmmsearch_001 (test_SearchIO_hmmer3_domtab.HmmersearchCases)
Test parsing hmmsearch-domtab, hmmsearch 3.1b1, single query (domtab_31b1_hmmsearch_001) ... ok
test_domtab_30_hmmscan_001 (test_SearchIO_hmmer3_domtab.HmmscanCases)
Test parsing hmmscan-domtab, hmmscan 3.0, multiple queries (domtab_30_hmmscan_001) ... ok
test_domtab_30_hmmscan_002 (test_SearchIO_hmmer3_domtab.HmmscanCases)
Test parsing hmmscan-domtab, hmmscan 3.0, single query, no hits (domtab_30_hmmscan_002) ... ok
test_domtab_30_hmmscan_003 (test_SearchIO_hmmer3_domtab.HmmscanCases)
Test parsing hmmscan-domtab, hmmscan 3.0, multiple queries (domtab_30_hmmscan_003) ... ok
test_domtab_30_hmmscan_004 (test_SearchIO_hmmer3_domtab.HmmscanCases)
Test parsing hmmscan-domtab, hmmscan 3.0, multiple queries (domtab_30_hmmscan_004) ... ok
test_domtab_31b1_hmmscan_001 (test_SearchIO_hmmer3_domtab.HmmscanCases)
Test parsing hmmscan-domtab, hmmscan 3.1b1, multiple queries (domtab_31b1_hmmscan_001) ... ok
----------------------------------------------------------------------
Ran 1 test in 0.342 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_SearchIO_hmmer3_domtab_index.py
test_SearchIO_hmmer3_domtab_index ... ok
test_hmmerdomtab_30_hmmscan_001 (test_SearchIO_hmmer3_domtab_index.HmmerDomtabIndexCases)
Test hmmscan-domtab indexing, HMMER 3.0, multiple queries ... ok
test_hmmerdomtab_30_hmmscan_002 (test_SearchIO_hmmer3_domtab_index.HmmerDomtabIndexCases)
Test hmmscan-domtab indexing, HMMER 3.0, single query, no hits ... ok
test_hmmerdomtab_30_hmmscan_003 (test_SearchIO_hmmer3_domtab_index.HmmerDomtabIndexCases)
Test hmmscan-domtab indexing, HMMER 3.0, single query, multiple hits ... ok
test_hmmerdomtab_30_hmmscan_004 (test_SearchIO_hmmer3_domtab_index.HmmerDomtabIndexCases)
Test hmmscan-domtab indexing, HMMER 3.0, single query, no alignments ... ok
test_hmmerdomtab_30_hmmsearch_001 (test_SearchIO_hmmer3_domtab_index.HmmerDomtabIndexCases)
Test hmmsearch-domtab indexing, HMMER 3.0, single query, no alignments ... ok
test_hmmerdomtab_30_multiple_first (test_SearchIO_hmmer3_domtab_index.HmmerDomtabRawCases)
Test hmmscan-domtab raw string retrieval, HMMER 3.0, multiple queries, first (domtab_30_hmmscan_001.out) ... ok
test_hmmerdomtab_30_multiple_last (test_SearchIO_hmmer3_domtab_index.HmmerDomtabRawCases)
Test hmmscan-domtab raw string retrieval, HMMER 3.0, multiple queries, last (domtab_30_hmmscan_001.out) ... ok
test_hmmerdomtab_30_multiple_middle (test_SearchIO_hmmer3_domtab_index.HmmerDomtabRawCases)
Test hmmscan-domtab raw string retrieval, HMMER 3.0, multiple queries, middle (domtab_30_hmmscan_001.out) ... ok
test_hmmerdomtab_30_single (test_SearchIO_hmmer3_domtab_index.HmmerDomtabRawCases)
Test hmmscan-domtab raw string retrieval, HMMER 3.0, single query (domtab_30_hmmscan_004.out) ... ok
----------------------------------------------------------------------
Ran 1 test in 0.391 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ /usr/bin/python3 run_tests.py --offline -v test_SearchIO_hmmer3_tab.py
test_SearchIO_hmmer3_tab ... ok
test_30_hmmscan_001 (test_SearchIO_hmmer3_tab.HmmscanCases)
Test parsing hmmer3-tab, hmmscan 3.0, multiple queries (tab_30_hmmscan_001) ... ok
test_30_hmmscan_002 (test_SearchIO_hmmer3_tab.HmmscanCases)
Test parsing hmmer3-tab, hmmscan 3.0, single query, no hits (tab_30_hmmscan_002) ... ok
test_30_hmmscan_003 (test_SearchIO_hmmer3_tab.HmmscanCases)
Test parsing hmmer3-tab, hmmscan 3.0, single query, single hit, single hsp (tab_30_hmmscan_003) ... ok
test_30_hmmscan_004 (test_SearchIO_hmmer3_tab.HmmscanCases)
Test parsing hmmer3-tab, hmmscan 3.0, single query, multiple hits (tab_30_hmmscan_004) ... ok
test_31b1_hmmscan_001 (test_SearchIO_hmmer3_tab.HmmscanCases)
Test parsing hmmer3-tab, hmmscan 3.1b1, multiple queries (tab_31b1_hmmscan_001) ... ok
test_31b1_hmmsearch_001 (test_SearchIO_hmmer3_tab.HmmsearchCases)
Test parsing hmmer3-tab, hmmsearch 3.1b1, multiple queries (tab_31b1_hmmscan_001) ... ok
----------------------------------------------------------------------
Ran 1 test in 0.315 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_SearchIO_hmmer3_tab_index.py
test_SearchIO_hmmer3_tab_index ... ok
test_hmmer3tab_30_hmmscan_001 (test_SearchIO_hmmer3_tab_index.Hmmer3TabIndexCases)
Test hmmer3-tab indexing, HMMER 3.0, multiple queries ... ok
test_hmmer3tab_30_hmmscan_002 (test_SearchIO_hmmer3_tab_index.Hmmer3TabIndexCases)
Test hmmer3-tab indexing, HMMER 3.0, single query, no hits ... ok
test_hmmer3tab_30_hmmscan_003 (test_SearchIO_hmmer3_tab_index.Hmmer3TabIndexCases)
Test hmmer3-tab indexing, HMMER 3.0, single query, multiple hits ... ok
test_hmmer3tab_30_hmmscan_004 (test_SearchIO_hmmer3_tab_index.Hmmer3TabIndexCases)
Test hmmer3-tab indexing, HMMER 3.0, single query, no alignments ... ok
test_hmmer3tab_30_multiple_first (test_SearchIO_hmmer3_tab_index.Hmmer3TabRawCases)
Test hmmer3-tab raw string retrieval, HMMER 3.0, multiple queries, first (tab_30_hmmscan_001.out) ... ok
test_hmmer3tab_30_multiple_last (test_SearchIO_hmmer3_tab_index.Hmmer3TabRawCases)
Test hmmer3-tab raw string retrieval, HMMER 3.0, multiple queries, last (tab_30_hmmscan_001.out) ... ok
test_hmmer3tab_30_multiple_middle (test_SearchIO_hmmer3_tab_index.Hmmer3TabRawCases)
Test hmmer3-tab raw string retrieval, HMMER 3.0, multiple queries, middle (tab_30_hmmscan_001.out) ... ok
test_hmmer3tab_30_single (test_SearchIO_hmmer3_tab_index.Hmmer3TabRawCases)
Test hmmer3-tab raw string retrieval, HMMER 3.0, single query (tab_30_hmmscan_004.out) ... ok
----------------------------------------------------------------------
Ran 1 test in 0.348 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_SearchIO_hmmer3_text.py
test_SearchIO_hmmer3_text ... ok
test_30_hmmsearch_001 (test_SearchIO_hmmer3_text.HmmersearchCases)
Test parsing hmmersearch 3.0 (text_30_hmmsearch_001) ... ok
test_30_hmmsearch_002 (test_SearchIO_hmmer3_text.HmmersearchCases)
Test parsing hmmersearch 3.0 (text_30_hmmsearch_002) ... ok
test_30_hmmsearch_003 (test_SearchIO_hmmer3_text.HmmersearchCases)
Test parsing hmmersearch 3.0 (text_30_hmmsearch_003) ... ok
test_30_hmmsearch_004 (test_SearchIO_hmmer3_text.HmmersearchCases)
Test parsing hmmersearch 3.0 (text_30_hmmsearch_004) ... ok
test_30_hmmsearch_005 (test_SearchIO_hmmer3_text.HmmersearchCases)
Test parsing hmmersearch 3.0 (text_30_hmmsearch_005) ... ok
test_31b1_hmmsearch_001 (test_SearchIO_hmmer3_text.HmmersearchCases)
Test parsing hmmsearch 3.1b1 (text_31b1_hmmsearch_001) ... ok
test_31b2_hmmscan_001 (test_SearchIO_hmmer3_text.HmmersearchCases)
Test parsing hmmscan 3.1b2 (text_31b2_hmmscan_001) ... ok
test_31b2_hmmsearch_001 (test_SearchIO_hmmer3_text.HmmersearchCases)
Test parsing hmmsearch 3.1b2 (text_31b2_hmmsearch_001) ... ok
test_31b2_hmmsearch_002 (test_SearchIO_hmmer3_text.HmmersearchCases)
Test parsing hmmsearch 3.1b2 (text_31b2_hmmsearch_002) ... ok
test_30_hmmscan_001 (test_SearchIO_hmmer3_text.HmmscanCases)
Test parsing hmmscan 3.0 (text_30_hmmscan_001) ... ok
test_30_hmmscan_002 (test_SearchIO_hmmer3_text.HmmscanCases)
Test parsing hmmscan 3.0 (text_30_hmmscan_002) ... ok
test_30_hmmscan_003 (test_SearchIO_hmmer3_text.HmmscanCases)
Test parsing hmmscan 3.0 (text_30_hmmscan_003) ... ok
test_30_hmmscan_004 (test_SearchIO_hmmer3_text.HmmscanCases)
Test parsing hmmscan 3.0 (text_30_hmmscan_004) ... ok
test_30_hmmscan_005 (test_SearchIO_hmmer3_text.HmmscanCases)
Test parsing hmmscan 3.0 (text_30_hmmscan_005) ... ok
test_30_hmmscan_006 (test_SearchIO_hmmer3_text.HmmscanCases)
Test parsing hmmscan 3.0 (text_30_hmmscan_006) ... ok
test_30_hmmscan_007 (test_SearchIO_hmmer3_text.HmmscanCases)
Test parsing hmmscan 3.0 (text_30_hmmscan_007) ... ok
test_30_hmmscan_008 (test_SearchIO_hmmer3_text.HmmscanCases)
Test parsing hmmscan 3.0 (text_30_hmmscan_008) ... ok
test_30_hmmscan_009 (test_SearchIO_hmmer3_text.HmmscanCases)
Test parsing hmmscan 3.0 (text_30_hmmscan_009) ... ok
test_30_hmmscan_010 (test_SearchIO_hmmer3_text.HmmscanCases)
Test parsing hmmscan 3.0 (text_30_hmmscan_010) ... ok
test_31b1_hmmscan_001 (test_SearchIO_hmmer3_text.HmmscanCases)
Test parsing hmmscan 3.1b1 (text_31b1_hmmscan_001) ... ok
test_31b2_phmmer_001 (test_SearchIO_hmmer3_text.PhmmerCases)
Test parsing phmmer 3.1b2 (text_31b2_phmmer_001) ... ok
----------------------------------------------------------------------
Ran 1 test in 0.899 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ /usr/bin/python3 run_tests.py --offline -v test_SearchIO_hmmer3_text_index.py
test_SearchIO_hmmer3_text_index ... ok
test_hmmertext_text_30_hmmscan_001 (test_SearchIO_hmmer3_text_index.Hmmer3TextIndexCases)
Test hmmer3-text indexing, HMMER 3.0, multiple queries ... ok
test_hmmertext_text_30_hmmscan_002 (test_SearchIO_hmmer3_text_index.Hmmer3TextIndexCases)
Test hmmer3-text indexing, HMMER 3.0, single query, no hits ... ok
test_hmmertext_text_30_hmmscan_006 (test_SearchIO_hmmer3_text_index.Hmmer3TextIndexCases)
Test hmmer3-text indexing, HMMER 3.0, single query, multiple hits ... ok
test_hmmertext_text_30_hmmscan_007 (test_SearchIO_hmmer3_text_index.Hmmer3TextIndexCases)
Test hmmer3-text indexing, HMMER 3.0, single query, no alignments ... ok
test_hmmertext_text_30_hmmscan_008 (test_SearchIO_hmmer3_text_index.Hmmer3TextIndexCases)
Test hmmer3-text indexing, HMMER 3.0, single query, no alignment width ... ok
test_hmmertext_text_30_hmmsearch_005 (test_SearchIO_hmmer3_text_index.Hmmer3TextIndexCases)
Test hmmer3-text indexing, HMMER 3.0, multiple queries ... ok
test_hmmer3text_30_multiple_first (test_SearchIO_hmmer3_text_index.Hmmer3TextRawCases)
Test hmmer3-text raw string retrieval, HMMER 3.0, multiple queries, first (text_30_hmmscan_001.out) ... ok
test_hmmer3text_30_multiple_last (test_SearchIO_hmmer3_text_index.Hmmer3TextRawCases)
Test hmmer3-text raw string retrieval, HMMER 3.0, multiple queries, last (text_30_hmmscan_001.out) ... ok
test_hmmer3text_30_multiple_middle (test_SearchIO_hmmer3_text_index.Hmmer3TextRawCases)
Test hmmer3-text raw string retrieval, HMMER 3.0, multiple queries, middle (text_30_hmmscan_001.out) ... ok
test_hmmer3text_30_single (test_SearchIO_hmmer3_text_index.Hmmer3TextRawCases)
Test hmmer3-text raw string retrieval, HMMER 3.0, single query (text_30_hmmscan_003.out) ... ok
----------------------------------------------------------------------
Ran 1 test in 0.539 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_SearchIO_model.py
test_SearchIO_model ... ok
test_alphabet_no_seq (test_SearchIO_model.HSPFragmentCases)
Test HSPFragment alphabet property, query and hit sequences not present ... ok
test_alphabet_with_seq (test_SearchIO_model.HSPFragmentCases)
Test HSPFragment alphabet property, query or hit sequences present ... ok
test_coords_setters_getters (test_SearchIO_model.HSPFragmentCases)
Test HSPFragment query and hit coordinate-related setters and getters ... ok
test_coords_setters_readonly (test_SearchIO_model.HSPFragmentCases)
Test HSPFragment query and hit coordinate-related read-only getters ... ok
test_default_attrs (test_SearchIO_model.HSPFragmentCases)
Test HSPFragment attributes' default values ... ok
test_frame_set_error (test_SearchIO_model.HSPFragmentCases)
Test HSPFragment query and hit frame setters, invalid values ... ok
test_frame_set_ok (test_SearchIO_model.HSPFragmentCases)
Test HSPFragment query and hit frame setters ... ok
test_getitem (test_SearchIO_model.HSPFragmentCases)
Test HSPFragment.__getitem__ ... ok
test_getitem_alignment_annot (test_SearchIO_model.HSPFragmentCases)
Test HSPFragment.__getitem__, with alignment annotation ... ok
test_getitem_attrs (test_SearchIO_model.HSPFragmentCases)
Test HSPFragment.__getitem__, with attributes ... ok
test_id_desc_set (test_SearchIO_model.HSPFragmentCases)
Test HSPFragment query and hit id and description setters ... ok
test_init_with_seqrecord (test_SearchIO_model.HSPFragmentCases)
Test HSPFragment.__init__, with SeqRecord ... ok
test_init_wrong_seqtypes (test_SearchIO_model.HSPFragmentCases)
Test HSPFragment.__init__, wrong sequence argument types ... ok
test_len (test_SearchIO_model.HSPFragmentCases)
Test HSPFragment.__len__ ... ok
test_pickle (test_SearchIO_model.HSPFragmentCases)
Test pickling and unpickling of HSPFragment ... ok
test_repr (test_SearchIO_model.HSPFragmentCases)
Test HSPFragment.__repr__ ... ok
test_seq_unequal_hit_query_len (test_SearchIO_model.HSPFragmentCases)
Test HSPFragment sequence setter with unequal hit and query lengths ... ok
test_seqmodel (test_SearchIO_model.HSPFragmentCases)
Test HSPFragment sequence attribute types and default values ... ok
test_strand_set_error (test_SearchIO_model.HSPFragmentCases)
Test HSPFragment query and hit strand setters, invalid values ... ok
test_strand_set_from_minus_frame (test_SearchIO_model.HSPFragmentCases)
Test HSPFragment query and hit strand getters, from minus frame ... ok
test_strand_set_from_plus_frame (test_SearchIO_model.HSPFragmentCases)
Test HSPFragment query and hit strand getters, from plus frame ... ok
test_strand_set_from_zero_frame (test_SearchIO_model.HSPFragmentCases)
Test HSPFragment query and hit strand getters, from zero frame ... ok
test_strand_set_ok (test_SearchIO_model.HSPFragmentCases)
Test HSPFragment query and hit strand setters ... ok
test_getitem (test_SearchIO_model.HSPFragmentWithoutSeqCases)
Test HSPFragment.__getitem__, no alignments ... ok
test_getitem_only_hit (test_SearchIO_model.HSPFragmentWithoutSeqCases)
Test HSPFragment.__getitem__, only hit ... ok
test_getitem_only_query (test_SearchIO_model.HSPFragmentWithoutSeqCases)
Test HSPFragment.__getitem__, only query ... ok
test_init (test_SearchIO_model.HSPFragmentWithoutSeqCases)
Test HSPFragment.__init__ attributes ... ok
test_iter (test_SearchIO_model.HSPFragmentWithoutSeqCases)
Test HSP.__iter__, no alignments ... ok
test_len (test_SearchIO_model.HSPFragmentWithoutSeqCases)
Test HSPFragment.__len__, no alignments ... ok
test_repr (test_SearchIO_model.HSPFragmentWithoutSeqCases)
Test HSPFragment.__repr__, no alignments ... ok
test_seqmodel (test_SearchIO_model.HSPFragmentWithoutSeqCases)
Test HSPFragment sequence attributes, no alignments ... ok
test_alphabet (test_SearchIO_model.HSPMultipleFragmentCases)
Test HSP.alphabet getter ... ok
test_alphabet_set (test_SearchIO_model.HSPMultipleFragmentCases)
Test HSP.alphabet setter ... ok
test_contains (test_SearchIO_model.HSPMultipleFragmentCases)
Test HSP.__contains__ ... ok
test_delitem (test_SearchIO_model.HSPMultipleFragmentCases)
Test HSP.__delitem__ ... ok
test_fragments (test_SearchIO_model.HSPMultipleFragmentCases)
Test HSP.fragments property ... ok
test_getitem (test_SearchIO_model.HSPMultipleFragmentCases)
Test HSP.__getitem__ ... ok
test_id_desc_set (test_SearchIO_model.HSPMultipleFragmentCases)
Test HSP query and hit id and description setters ... ok
test_is_fragmented (test_SearchIO_model.HSPMultipleFragmentCases)
Test HSP.is_fragmented property ... ok
test_len (test_SearchIO_model.HSPMultipleFragmentCases)
Test HSP.__len__ ... ok
test_pickle (test_SearchIO_model.HSPMultipleFragmentCases)
Test pickling and unpickling of HSP ... ok
test_range (test_SearchIO_model.HSPMultipleFragmentCases)
Test HSP range properties ... ok
test_ranges (test_SearchIO_model.HSPMultipleFragmentCases)
Test HSP ranges properties ... ok
test_seqs (test_SearchIO_model.HSPMultipleFragmentCases)
Test HSP sequence properties ... ok
test_setitem_multiple (test_SearchIO_model.HSPMultipleFragmentCases)
Test HSP.__setitem__, multiple items ... ok
test_setitem_single (test_SearchIO_model.HSPMultipleFragmentCases)
Test HSP.__setitem___, single item ... ok
test_setters_readonly (test_SearchIO_model.HSPMultipleFragmentCases)
Test HSP read-only properties ... ok
test_span (test_SearchIO_model.HSPMultipleFragmentCases)
Test HSP span properties ... ok
test_alignment (test_SearchIO_model.HSPSingleFragmentCases)
Test HSP.alignment property ... ok
test_aln_span (test_SearchIO_model.HSPSingleFragmentCases)
Test HSP.aln_span property ... ok
test_fragment (test_SearchIO_model.HSPSingleFragmentCases)
Test HSP.fragment property ... ok
test_init_no_fragment (test_SearchIO_model.HSPSingleFragmentCases)
Test HSP.__init__ without fragments ... ok
test_is_fragmented (test_SearchIO_model.HSPSingleFragmentCases)
Test HSP.is_fragmented property ... ok
test_len (test_SearchIO_model.HSPSingleFragmentCases)
Test HSP.__len__ ... ok
test_range (test_SearchIO_model.HSPSingleFragmentCases)
Test HSP range properties ... ok
test_seq (test_SearchIO_model.HSPSingleFragmentCases)
Test HSP sequence properties ... ok
test_setters_readonly (test_SearchIO_model.HSPSingleFragmentCases)
Test HSP read-only properties ... ok
test_span (test_SearchIO_model.HSPSingleFragmentCases)
Test HSP span properties ... ok
test_append (test_SearchIO_model.HitCases)
Test Hit.append ... ok
test_delitem (test_SearchIO_model.HitCases)
Test Hit.__delitem__ ... ok
test_desc_set (test_SearchIO_model.HitCases)
Test Hit.description setter ... ok
test_desc_set_no_seqrecord (test_SearchIO_model.HitCases)
Test Hit.description setter, without HSP SeqRecords ... ok
test_filter (test_SearchIO_model.HitCases)
Test Hit.filter ... ok
test_filter_no_filtered (test_SearchIO_model.HitCases)
Test Hit.hit_filter, all hits filtered out ... ok
test_filter_no_func (test_SearchIO_model.HitCases)
Test Hit.filter, without arguments ... ok
test_fragments (test_SearchIO_model.HitCases)
Test Hit.fragments ... ok
test_getitem_multiple (test_SearchIO_model.HitCases)
Test Hit.__getitem__, multiple items ... ok
test_getitem_single (test_SearchIO_model.HitCases)
Test Hit.__getitem__, single item ... ok
test_hsp_map_no_func (test_SearchIO_model.HitCases)
Test Hit.map, without arguments ... ok
test_hsps (test_SearchIO_model.HitCases)
Test Hit.hsps ... ok
test_id_set (test_SearchIO_model.HitCases)
Test Hit.id setter ... ok
test_index (test_SearchIO_model.HitCases)
Test Hit.index ... ok
test_index_not_present (test_SearchIO_model.HitCases)
Test Hit.index, when index is not present ... ok
test_init_hsps_only (test_SearchIO_model.HitCases)
Test Hit.__init__, with hsps only ... ok
test_init_id_only (test_SearchIO_model.HitCases)
Test Hit.__init__, with ID only ... ok
test_init_none (test_SearchIO_model.HitCases)
Test Hit.__init__, no arguments ... ok
test_item_multiple (test_SearchIO_model.HitCases)
Test Hit.__setitem__, multiple items ... ok
test_iter (test_SearchIO_model.HitCases)
Test Hit.__iter__ ... ok
test_len (test_SearchIO_model.HitCases)
Test Hit.__len__ ... ok
test_map (test_SearchIO_model.HitCases)
Test Hit.hsp_map ... ok
test_nonzero (test_SearchIO_model.HitCases)
Test Hit.__nonzero__ ... ok
test_pickle (test_SearchIO_model.HitCases)
Test pickling and unpickling of Hit ... ok
test_pop (test_SearchIO_model.HitCases)
Test Hit.pop ... ok
test_repr (test_SearchIO_model.HitCases)
Test Hit.__repr__ ... ok
test_setitem_single (test_SearchIO_model.HitCases)
Test Hit.__setitem__, single item ... ok
test_sort (test_SearchIO_model.HitCases)
Test Hit.sort ... ok
test_sort_not_in_place (test_SearchIO_model.HitCases)
Test Hit.sort, not in place ... ok
test_validate_hsp_ok (test_SearchIO_model.HitCases)
Test Hit._validate_hsp ... ok
test_validate_hsp_wrong_hit_id (test_SearchIO_model.HitCases)
Test Hit._validate_hsp, wrong hit ID ... ok
test_validate_hsp_wrong_query_id (test_SearchIO_model.HitCases)
Test Hit._validate_hsp, wrong query ID ... ok
test_validate_hsp_wrong_type (test_SearchIO_model.HitCases)
Test Hit._validate_hsp, wrong type ... ok
test_absorb_hit_does_not_exist (test_SearchIO_model.QueryResultCases)
Test QueryResult.absorb, hit does not exist ... ok
test_absorb_hit_exists (test_SearchIO_model.QueryResultCases)
Test QueryResult.absorb, hit with the same ID exists ... ok
test_append_alt_id_exists (test_SearchIO_model.QueryResultCases)
Test QueryResult.append, when alt ID exists ... ok
test_append_alt_id_exists_alt (test_SearchIO_model.QueryResultCases)
Test QueryResult.append, when alt ID exists as primary ... ok
test_append_custom_hit_key_function_ok (test_SearchIO_model.QueryResultCases)
Test QueryResult.append, with custom hit key function ... ok
test_append_id_exists (test_SearchIO_model.QueryResultCases)
Test QueryResult.append, when ID exists ... ok
test_append_ok (test_SearchIO_model.QueryResultCases)
Test QueryResult.append ... ok
test_contains (test_SearchIO_model.QueryResultCases)
Test QueryResult.__contains__ ... ok
test_contains_alt (test_SearchIO_model.QueryResultCases)
Test QueryResult.__contains__, with alternative IDs ... ok
test_delitem_alt_ok (test_SearchIO_model.QueryResultCases)
Test QueryResult.__delitem__, with alt ID ... ok
test_delitem_int_ok (test_SearchIO_model.QueryResultCases)
Test QueryResult.__delitem__ ... ok
test_delitem_slice_ok (test_SearchIO_model.QueryResultCases)
Test QueryResult.__delitem__, with slice ... ok
test_delitem_string_ok (test_SearchIO_model.QueryResultCases)
Test QueryResult.__getitem__, with string ... ok
test_description_set (test_SearchIO_model.QueryResultCases)
Test QueryResult.description setter ... ok
test_description_set_no_seqrecord (test_SearchIO_model.QueryResultCases)
Test QueryResult.description setter, without HSP SeqRecords ... ok
test_fragments (test_SearchIO_model.QueryResultCases)
Test QueryResult.fragments ... ok
test_getitem_alt_ok (test_SearchIO_model.QueryResultCases)
Test QueryResult.__getitem__, single item with alternative ID ... ok
test_getitem_default_ok (test_SearchIO_model.QueryResultCases)
Test QueryResult.__getitem__ ... ok
test_getitem_int_ok (test_SearchIO_model.QueryResultCases)
Test QueryResult.__getitem__, with integer ... ok
test_getitem_slice_ok (test_SearchIO_model.QueryResultCases)
Test QueryResult.__getitem__, with slice ... ok
test_getitm_slice_alt_ok (test_SearchIO_model.QueryResultCases)
Test QueryResult.__getitem__, with slice and alt IDs ... ok
test_hit_filter (test_SearchIO_model.QueryResultCases)
Test QueryResult.hit_filter ... ok
test_hit_filter_no_filtered (test_SearchIO_model.QueryResultCases)
Test QueryResult.hit_filter, all hits filtered out ... ok
test_hit_filter_no_func (test_SearchIO_model.QueryResultCases)
Test QueryResult.hit_filter, without arguments ... ok
test_hit_keys (test_SearchIO_model.QueryResultCases)
Test QueryResult.hit_keys ... ok
test_hit_map (test_SearchIO_model.QueryResultCases)
Test QueryResult.hit_map ... ok
test_hit_map_no_func (test_SearchIO_model.QueryResultCases)
Test QueryResult.hit_map, without arguments ... ok
test_hits (test_SearchIO_model.QueryResultCases)
Test QueryResult.hits ... ok
test_hsp_filter (test_SearchIO_model.QueryResultCases)
Test QueryResult.hsp_filter ... ok
test_hsp_filter_no_filtered (test_SearchIO_model.QueryResultCases)
Test QueryResult.hsp_filter, all hits filtered out ... ok
test_hsp_filter_no_func (test_SearchIO_model.QueryResultCases)
Test QueryResult.hsp_filter, no arguments ... ok
test_hsp_map (test_SearchIO_model.QueryResultCases)
Test QueryResult.hsp_map ... ok
test_hsp_map_no_func (test_SearchIO_model.QueryResultCases)
Test QueryResult.hsp_map, without arguments ... ok
test_hsps (test_SearchIO_model.QueryResultCases)
Test QueryResult.hsps ... ok
test_id_set (test_SearchIO_model.QueryResultCases)
Test QueryResult.id setter ... ok
test_index (test_SearchIO_model.QueryResultCases)
Test QueryResult.index ... ok
test_index_alt (test_SearchIO_model.QueryResultCases)
Test QueryResult.index, with alt ID ... ok
test_index_not_present (test_SearchIO_model.QueryResultCases)
Test QueryResult.index, when index is not present ... ok
test_init_hits_only (test_SearchIO_model.QueryResultCases)
Test QueryResult.__init__, with hits only ... ok
test_init_id_only (test_SearchIO_model.QueryResultCases)
Test QueryResult.__init__, with ID only ... ok
test_init_none (test_SearchIO_model.QueryResultCases)
Test QueryResult.__init__, no arguments ... ok
test_items (test_SearchIO_model.QueryResultCases)
Test QueryResult.items ... ok
test_iter (test_SearchIO_model.QueryResultCases)
Test QueryResult.__iter__ ... ok
test_len (test_SearchIO_model.QueryResultCases)
Test QueryResult.__len__ ... ok
test_nonzero (test_SearchIO_model.QueryResultCases)
Test QueryResult.__nonzero__ ... ok
test_order (test_SearchIO_model.QueryResultCases) ... ok
test_pickle (test_SearchIO_model.QueryResultCases)
Test pickling and unpickling of QueryResult ... ok
test_pop_int_index_ok (test_SearchIO_model.QueryResultCases)
Test QueryResult.pop, with integer index ... ok
test_pop_ok (test_SearchIO_model.QueryResultCases)
Test QueryResult.pop ... ok
test_pop_string_alt_ok (test_SearchIO_model.QueryResultCases)
Test QueryResult.pop, with alternative ID ... ok
test_pop_string_index_ok (test_SearchIO_model.QueryResultCases)
Test QueryResult.pop, with string index ... ok
test_repr (test_SearchIO_model.QueryResultCases)
Test QueryResult.__repr__ ... ok
test_setitem_from_empty (test_SearchIO_model.QueryResultCases)
Test QueryResult.__setitem__, from empty container ... ok
test_setitem_ok (test_SearchIO_model.QueryResultCases)
Test QueryResult.__setitem__ ... ok
test_setitem_ok_alt (test_SearchIO_model.QueryResultCases)
Test QueryResult.__setitem__, checking alt hit IDs ... ok
test_setitem_ok_alt_existing (test_SearchIO_model.QueryResultCases)
Test QueryResult.__setitem__, existing key ... ok
test_setitem_ok_alt_ok_promote (test_SearchIO_model.QueryResultCases)
Test QueryResult.__setitem__, previously alt ID ... ok
test_setitem_wrong_key_type (test_SearchIO_model.QueryResultCases)
Test QueryResult.__setitem__, wrong key type ... ok
test_setitem_wrong_query_id (test_SearchIO_model.QueryResultCases)
Test QueryResult.__setitem__, wrong query ID ... ok
test_setitem_wrong_type (test_SearchIO_model.QueryResultCases)
Test QueryResult.__setitem__, wrong type ... ok
test_sort_key_not_in_place_ok (test_SearchIO_model.QueryResultCases)
Test QueryResult.sort, with custom key, not in place ... ok
test_sort_key_ok (test_SearchIO_model.QueryResultCases)
Test QueryResult.sort, with custom key ... ok
test_sort_not_in_place_ok (test_SearchIO_model.QueryResultCases)
Test QueryResult.sort, not in place ... ok
test_sort_ok (test_SearchIO_model.QueryResultCases)
Test QueryResult.sort ... ok
test_sort_reverse_not_in_place_ok (test_SearchIO_model.QueryResultCases)
Test QueryResult.sort, reverse, not in place ... ok
test_sort_reverse_ok (test_SearchIO_model.QueryResultCases)
Test QueryResult.sort, reverse ... ok
----------------------------------------------------------------------
Ran 1 test in 0.525 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_SearchIO_write.py
test_SearchIO_write ... ok
test_write_multiple_from_blasttab (test_SearchIO_write.BlastTabWriteCases)
Test blast-tab writing from blast-tab, BLAST 2.2.26+, multiple queries (tab_2226_tblastn_001.txt) ... ok
test_write_multiple_from_blasttabc (test_SearchIO_write.BlastTabWriteCases)
Test blast-tabc writing from blast-tabc, BLAST 2.2.26+, multiple queries (tab_2226_tblastn_005.txt) ... ok
test_write_multiple_from_blasttabc_allfields (test_SearchIO_write.BlastTabWriteCases)
Test blast-tabc writing from blast-tabc, BLAST 2.2.28+, multiple queries (tab_2228_tblastx_001.txt) ... ok
test_write_single_from_blasttab (test_SearchIO_write.BlastTabWriteCases)
Test blast-tab writing from blast-tab, BLAST 2.2.26+, single query (tab_2226_tblastn_004.txt) ... ok
test_write_single_from_blasttabc (test_SearchIO_write.BlastTabWriteCases)
Test blast-tabc writing from blast-tabc, BLAST 2.2.26+, single query (tab_2226_tblastn_008.txt) ... ok
test_write_multiple_from_blastxml (test_SearchIO_write.BlastXmlWriteCases)
Test blast-xml writing from blast-xml, BLAST 2.2.26+, multiple queries (xml_2226_blastp_001.xml) ... ok
test_write_single_from_blastxml (test_SearchIO_write.BlastXmlWriteCases)
Test blast-xml writing from blast-xml, BLAST 2.2.26+, single query (xml_2226_blastp_004.xml) ... ok
test_write_multiple_from_blatpsl (test_SearchIO_write.BlatPslWriteCases)
Test blat-psl writing from blat-psl, multiple queries (psl_34_001.psl) ... ok
test_write_multiple_from_blatpslx (test_SearchIO_write.BlatPslWriteCases)
Test blat-pslx writing from blat-pslx, multiple queries (pslx_34_001.pslx) ... ok
test_write_single_from_blatpsl (test_SearchIO_write.BlatPslWriteCases)
Test blat-psl writing from blat-psl, single query (psl_34_004.psl) ... ok
test_write_single_from_blatpsl_protein_query (test_SearchIO_write.BlatPslWriteCases)
Test blat-psl writing from blat-psl, single query (psl_35_002.psl) ... ok
test_write_single_from_blatpslx (test_SearchIO_write.BlatPslWriteCases)
Test blat-pslx writing from blat-pslx, single query (pslx_34_004.pslx) ... ok
test_write_single_from_blatpslx_protein_query (test_SearchIO_write.BlatPslWriteCases)
Test blat-pslx writing from blat-pslx, single query (pslx_35_002.pslx) ... ok
test_write_multiple_from_hmmscandomtab (test_SearchIO_write.HmmerDomtabWriteCases)
Test hmmscan-domtab writing from hmmscan-domtab, HMMER 3.0, multiple queries (tab_30_hmmscan_001.out) ... ok
test_write_single_from_hmmscandomtab (test_SearchIO_write.HmmerDomtabWriteCases)
Test hmmscan-domtab writing from hmmscan-domtab, HMMER 3.0, single query (tab_30_hmmscan_004.out) ... ok
test_write_single_from_hmmsearchdomtab (test_SearchIO_write.HmmerDomtabWriteCases)
Test hmmsearch-domtab writing from hmmsearch-domtab, HMMER 3.0, single query (tab_30_hmmscan_004.out) ... ok
test_write_multiple_from_hmmertab (test_SearchIO_write.HmmerTabWriteCases)
Test hmmer3-tab writing from hmmer3-tab, HMMER 3.0, multiple queries (tab_30_hmmscan_001.out) ... ok
test_write_single_from_hmmertab (test_SearchIO_write.HmmerTabWriteCases)
Test hmmer3-tab writing from hmmer3-tab, HMMER 3.0, single query (tab_30_hmmscan_004.out) ... ok
----------------------------------------------------------------------
Ran 1 test in 1.666 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ /usr/bin/python3 run_tests.py --offline -v test_SeqFeature.py
test_SeqFeature ... ok
test_eq_identical (test_SeqFeature.TestCompoundLocation)
Test two identical locations are equal ... ok
test_eq_not_identical (test_SeqFeature.TestCompoundLocation)
Test two different locations are not equal ... ok
test_eq_identical (test_SeqFeature.TestFeatureLocation)
Test two identical locations are equal ... ok
test_eq_not_identical (test_SeqFeature.TestFeatureLocation)
Test two different locations are not equal ... ok
test_eq_identical (test_SeqFeature.TestReference)
Test two identical references eq() to True ... ok
----------------------------------------------------------------------
Ran 1 test in 0.374 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_SeqRecord.py
test_SeqRecord ... ok
test_annotations (test_SeqRecord.SeqRecordCreation)
Pass in annotations to SeqRecords ... ok
test_letter_annotations (test_SeqRecord.SeqRecordCreation)
Pass in letter annotations to SeqRecords ... ok
test_replacing_seq (test_SeqRecord.SeqRecordCreation)
Replacing .seq if .letter_annotation present. ... ok
test_valid_annotations (test_SeqRecord.SeqRecordCreation) ... ok
test_valid_dbxrefs (test_SeqRecord.SeqRecordCreation) ... ok
test_valid_description (test_SeqRecord.SeqRecordCreation) ... ok
test_valid_features (test_SeqRecord.SeqRecordCreation) ... ok
test_valid_id (test_SeqRecord.SeqRecordCreation) ... ok
test_valid_name (test_SeqRecord.SeqRecordCreation) ... ok
test_add_seq (test_SeqRecord.SeqRecordMethods)
Simple addition of Seq or string ... ok
test_add_seq_left (test_SeqRecord.SeqRecordMethods)
Simple left addition of Seq or string ... ok
test_add_seqrecord (test_SeqRecord.SeqRecordMethods)
Simple left addition of SeqRecord from genbank file. ... ok
test_add_simple (test_SeqRecord.SeqRecordMethods)
Simple addition ... ok
test_contains (test_SeqRecord.SeqRecordMethods) ... ok
test_eq_exception (test_SeqRecord.SeqRecordMethods) ... ok
test_format (test_SeqRecord.SeqRecordMethods) ... ok
test_ge_exception (test_SeqRecord.SeqRecordMethods) ... ok
test_gt_exception (test_SeqRecord.SeqRecordMethods) ... ok
test_iter (test_SeqRecord.SeqRecordMethods) ... ok
test_le_exception (test_SeqRecord.SeqRecordMethods) ... ok
test_lower (test_SeqRecord.SeqRecordMethods) ... ok
test_lt_exception (test_SeqRecord.SeqRecordMethods) ... ok
test_ne_exception (test_SeqRecord.SeqRecordMethods) ... ok
test_repr (test_SeqRecord.SeqRecordMethods) ... ok
test_reverse_complement_mutable_seq (test_SeqRecord.SeqRecordMethods) ... ok
test_reverse_complement_seq (test_SeqRecord.SeqRecordMethods) ... ok
test_slice_add_shift (test_SeqRecord.SeqRecordMethods)
Simple slice and add to shift ... ok
test_slice_add_simple (test_SeqRecord.SeqRecordMethods)
Simple slice and add ... ok
test_slice_simple (test_SeqRecord.SeqRecordMethods)
Simple slice ... ok
test_slice_variants (test_SeqRecord.SeqRecordMethods)
Simple slices using different start/end values ... ok
test_slice_zero (test_SeqRecord.SeqRecordMethods)
Zero slice ... ok
test_slicing (test_SeqRecord.SeqRecordMethods) ... ok
test_str (test_SeqRecord.SeqRecordMethods) ... ok
test_upper (test_SeqRecord.SeqRecordMethods) ... ok
----------------------------------------------------------------------
Ran 1 test in 0.939 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ /usr/bin/python3 run_tests.py --offline -v test_SeqUtils.py
test_SeqUtils ... ok
test_GC (test_SeqUtils.SeqUtilsTests) ... ok
test_GC_skew (test_SeqUtils.SeqUtilsTests) ... ok
test_checksum1 (test_SeqUtils.SeqUtilsTests) ... ok
test_checksum2 (test_SeqUtils.SeqUtilsTests) ... ok
test_checksum3 (test_SeqUtils.SeqUtilsTests) ... ok
test_codon_usage_custom (test_SeqUtils.SeqUtilsTests)
Test Codon Adaptation Index (CAI) using FASTA file for background. ... ok
test_codon_usage_ecoli (test_SeqUtils.SeqUtilsTests)
Test Codon Adaptation Index (CAI) using default E. coli data. ... ok
test_crc_checksum_collision (test_SeqUtils.SeqUtilsTests) ... ok
test_seq1_seq3 (test_SeqUtils.SeqUtilsTests) ... ok
----------------------------------------------------------------------
Ran 1 test in 0.422 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_Seq_objs.py
test_Seq_objs ... ok
test_count_overlap_start_end_GG (test_Seq_objs.StringMethodTests)
Check our count_overlap method using GG with variable ends and starts. ... ok
test_count_overlap_start_end_NN (test_Seq_objs.StringMethodTests)
Check our count_overlap method using NN with variable ends and starts. ... ok
test_init_typeerror (test_Seq_objs.StringMethodTests)
Check Seq __init__ gives TypeError exceptions. ... ok
test_str_comparison (test_Seq_objs.StringMethodTests) ... ok
test_str_count (test_Seq_objs.StringMethodTests)
Check matches the python string count method. ... ok
test_str_count_overlap_GG (test_Seq_objs.StringMethodTests)
Check our count_overlap method using GG. ... ok
test_str_count_overlap_NN (test_Seq_objs.StringMethodTests)
Check our count_overlap method using NN. ... ok
test_str_endswith (test_Seq_objs.StringMethodTests)
Check matches the python string endswith method. ... ok
test_str_find (test_Seq_objs.StringMethodTests)
Check matches the python string find method. ... ok
test_str_getitem (test_Seq_objs.StringMethodTests)
Check slicing and indexing works like a string. ... ok
test_str_hash (test_Seq_objs.StringMethodTests) ... ok
test_str_length (test_Seq_objs.StringMethodTests)
Check matches the python string __len__ method. ... ok
test_str_lower (test_Seq_objs.StringMethodTests)
Check matches the python string lower method. ... ok
test_str_lsplit (test_Seq_objs.StringMethodTests)
Check matches the python string rstrip method. ... ok
test_str_rfind (test_Seq_objs.StringMethodTests)
Check matches the python string rfind method. ... ok
test_str_rsplit (test_Seq_objs.StringMethodTests)
Check matches the python string rstrip method. ... ok
test_str_rstrip (test_Seq_objs.StringMethodTests)
Check matches the python string rstrip method. ... ok
test_str_split (test_Seq_objs.StringMethodTests)
Check matches the python string rstrip method. ... ok
test_str_startswith (test_Seq_objs.StringMethodTests)
Check matches the python string startswith method. ... ok
test_str_strip (test_Seq_objs.StringMethodTests)
Check matches the python string strip method. ... ok
test_str_upper (test_Seq_objs.StringMethodTests)
Check matches the python string upper method. ... ok
test_the_back_transcription (test_Seq_objs.StringMethodTests)
Check obj.back_transcribe() method. ... ok
test_the_complement (test_Seq_objs.StringMethodTests)
Check obj.complement() method. ... ok
test_the_reverse_complement (test_Seq_objs.StringMethodTests)
Check obj.reverse_complement() method. ... ok
test_the_transcription (test_Seq_objs.StringMethodTests)
Check obj.transcribe() method. ... ok
test_the_translate (test_Seq_objs.StringMethodTests)
Check obj.translate() method. ... ok
test_the_translation_of_ambig_codons (test_Seq_objs.StringMethodTests)
Check obj.translate() method with ambiguous codons. ... ok
test_the_translation_of_invalid_codons (test_Seq_objs.StringMethodTests)
Check obj.translate() method with invalid codons. ... ok
test_the_translation_of_stops (test_Seq_objs.StringMethodTests)
Check obj.translate() method with stop codons. ... ok
test_tomutable (test_Seq_objs.StringMethodTests)
Check obj.tomutable() method. ... ok
test_toseq (test_Seq_objs.StringMethodTests)
Check obj.toseq() method. ... ok
----------------------------------------------------------------------
Ran 1 test in 9.218 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_SffIO.py
test_SffIO ... ok
test_alt_index_at_end (test_SffIO.TestAlternativeIndexes) ... ok
test_alt_index_at_start (test_SffIO.TestAlternativeIndexes) ... ok
test_alt_index_in_middle (test_SffIO.TestAlternativeIndexes) ... ok
test_index_at_start (test_SffIO.TestAlternativeIndexes) ... ok
test_index_in_middle (test_SffIO.TestAlternativeIndexes) ... ok
test_trim (test_SffIO.TestAlternativeIndexes) ... ok
test_index1 (test_SffIO.TestConcatenated) ... ok
test_index2 (test_SffIO.TestConcatenated) ... ok
test_parse1 (test_SffIO.TestConcatenated) ... ok
test_parse2 (test_SffIO.TestConcatenated) ... ok
test_parses_gzipped_stream (test_SffIO.TestConcatenated) ... ok
test_30bytes (test_SffIO.TestErrors) ... ok
test_31bytes (test_SffIO.TestErrors) ... ok
test_31bytes_bad_flowgram (test_SffIO.TestErrors) ... ok
test_31bytes_bad_ver (test_SffIO.TestErrors) ... ok
test_31bytes_index_header (test_SffIO.TestErrors) ... ok
test_bad_index_eof (test_SffIO.TestErrors) ... ok
test_bad_index_length (test_SffIO.TestErrors) ... ok
test_bad_index_offset (test_SffIO.TestErrors) ... ok
test_empty (test_SffIO.TestErrors) ... ok
test_index_lengths (test_SffIO.TestErrors) ... ok
test_index_mft_data_size (test_SffIO.TestErrors) ... ok
test_index_mft_version (test_SffIO.TestErrors) ... ok
test_index_name_no_null (test_SffIO.TestErrors) ... ok
test_no_index (test_SffIO.TestErrors) ... ok
test_no_manifest_xml (test_SffIO.TestErrors) ... ok
test_premature_end_of_index (test_SffIO.TestErrors) ... ok
test_unknown_index (test_SffIO.TestErrors) ... ok
test_both_ways (test_SffIO.TestIndex) ... ok
test_manifest (test_SffIO.TestIndex) ... ok
test_index (test_SffIO.TestSelf) ... ok
test_read (test_SffIO.TestSelf) ... ok
test_read_wrong (test_SffIO.TestSelf) ... ok
test_write (test_SffIO.TestSelf) ... ok
test_coords (test_SffIO.TestUAN) ... ok
test_region (test_SffIO.TestUAN) ... ok
test_time (test_SffIO.TestUAN) ... ok
----------------------------------------------------------------------
Ran 1 test in 0.484 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_SubsMat.py
test_SubsMat ... ok
runTest (__main__.ComparisonTestCase)
test_SubsMat ... ok
----------------------------------------------------------------------
Ran 1 test in 0.131 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ /usr/bin/python3 run_tests.py --offline -v test_SwissProt.py
test_SwissProt ... ok
test_sp001 (test_SwissProt.TestSwissProt)
Parsing SwissProt file sp001. ... ok
test_sp002 (test_SwissProt.TestSwissProt)
Parsing SwissProt file sp002. ... ok
test_sp003 (test_SwissProt.TestSwissProt)
Parsing SwissProt file sp003. ... ok
test_sp004 (test_SwissProt.TestSwissProt)
Parsing SwissProt file sp004. ... ok
test_sp005 (test_SwissProt.TestSwissProt)
Parsing SwissProt file sp005. ... ok
test_sp006 (test_SwissProt.TestSwissProt)
Parsing SwissProt file sp006. ... ok
test_sp007 (test_SwissProt.TestSwissProt)
Parsing SwissProt file sp007. ... ok
test_sp008 (test_SwissProt.TestSwissProt)
Parsing SwissProt file sp008. ... ok
test_sp009 (test_SwissProt.TestSwissProt)
Parsing SwissProt file sp009. ... ok
test_sp010 (test_SwissProt.TestSwissProt)
Parsing SwissProt file sp010. ... ok
test_sp011 (test_SwissProt.TestSwissProt)
Parsing SwissProt file sp011. ... ok
test_sp012 (test_SwissProt.TestSwissProt)
Parsing SwissProt file sp012. ... ok
test_sp013 (test_SwissProt.TestSwissProt)
Parsing SwissProt file sp013. ... ok
test_sp014 (test_SwissProt.TestSwissProt)
Parsing SwissProt file sp014. ... ok
test_sp015 (test_SwissProt.TestSwissProt)
Parsing SwissProt file sp015. ... ok
----------------------------------------------------------------------
Ran 1 test in 0.552 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_TCoffee_tool.py
test_TCoffee_tool ... skipping. Install TCOFFEE if you want to use the Bio.Align.Applications wrapper.
----------------------------------------------------------------------
Ran 1 test in 0.390 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_TogoWS.py
test_TogoWS ... skipping. internet not available
----------------------------------------------------------------------
Ran 1 test in 0.117 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ /usr/bin/python3 run_tests.py --offline -v test_TreeConstruction.py
test_TreeConstruction ... ok
test_known_matrices (test_TreeConstruction.DistanceCalculatorTest) ... ok
test_nonmatching_seqs (test_TreeConstruction.DistanceCalculatorTest) ... ok
test_bad_construction (test_TreeConstruction.DistanceMatrixTest) ... ok
test_bad_manipulation (test_TreeConstruction.DistanceMatrixTest) ... ok
test_format_phylip (test_TreeConstruction.DistanceMatrixTest) ... ok
test_good_construction (test_TreeConstruction.DistanceMatrixTest) ... ok
test_good_manipulation (test_TreeConstruction.DistanceMatrixTest) ... ok
test_built_tree (test_TreeConstruction.DistanceTreeConstructorTest) ... ok
test_nj (test_TreeConstruction.DistanceTreeConstructorTest) ... ok
test_upgma (test_TreeConstruction.DistanceTreeConstructorTest) ... ok
test_get_neighbors (test_TreeConstruction.NNITreeSearcherTest) ... ok
test_get_score (test_TreeConstruction.ParsimonyScorerTest) ... ok
test_build_tree (test_TreeConstruction.ParsimonyTreeConstructorTest) ... ok
----------------------------------------------------------------------
Ran 1 test in 2.278 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_UniGene.py
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
test_UniGene ... ok
test_parse (test_UniGene.TestUniGene) ... ok
test_read (test_UniGene.TestUniGene) ... ok
----------------------------------------------------------------------
Ran 1 test in 0.081 seconds
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_Uniprot.py
test_Uniprot ... ok
test_F2CXE6 (test_Uniprot.TestUniprot)
Compare SwissProt text and uniprot XML versions of F2CXE6. ... ok
test_H2CNN8 (test_Uniprot.TestUniprot)
Compare SwissProt text and uniprot XML versions of H2CNN8. ... ok
test_P84001 (test_Uniprot.TestUniprot)
Parse mass spec structured comment with unknown loc ... ok
test_Q13639 (test_Uniprot.TestUniprot)
Compare SwissProt text and uniprot XML versions of Q13639. ... ok
test_multi_ex (test_Uniprot.TestUniprot)
Compare SwissProt text and uniprot XML versions of several examples. ... ok
test_multi_ex_index (test_Uniprot.TestUniprot)
Index SwissProt text and uniprot XML versions of several examples. ... ok
test_sp002 (test_Uniprot.TestUniprot)
Parsing SwissProt file sp002 ... ok
test_sp016 (test_Uniprot.TestUniprot)
Parsing SwissProt file sp016 ... ok
test_submittedName_allowed (test_Uniprot.TestUniprot)
Checks if parser supports new XML Element (submittedName). ... ok
test_uni001 (test_Uniprot.TestUniprot)
Parsing Uniprot file uni001 ... ok
test_uni003 (test_Uniprot.TestUniprot)
Parsing Uniprot file uni003 ... ok
----------------------------------------------------------------------
Ran 1 test in 0.911 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_Wise.py
test_Wise ... ok
test_align (test_Wise.TestWise)
Call dnal with optional arguments, and do a trivial check on the output. ... ok
test_dnal (test_Wise.TestWiseDryRun)
Call dnal, and do a trivial check on its output. ... ok
test_psw (test_Wise.TestWiseDryRun)
Call psw, and do a trivial check on its output. ... ok
----------------------------------------------------------------------
Ran 1 test in 0.416 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ /usr/bin/python3 run_tests.py --offline -v test_XXmotif_tool.py
test_XXmotif_tool ... skipping. Install XXmotif if you want to use XXmotif from Biopython.
----------------------------------------------------------------------
Ran 1 test in 0.375 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_align.py
test_align ... ok
runTest (__main__.ComparisonTestCase)
test_align ... ok
----------------------------------------------------------------------
Ran 1 test in 0.871 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ /usr/bin/python3 run_tests.py --offline -v test_bgzf.py
test_bgzf ... ok
test_bam_ex1 (test_bgzf.BgzfTests)
Reproduce BGZF compression for BAM file ... ok
test_example_cor6 (test_bgzf.BgzfTests)
Reproduce BGZF compression for cor6_6.gb GenBank file ... ok
test_example_fastq (test_bgzf.BgzfTests)
Reproduce BGZF compression for a FASTQ file ... ok
test_example_gb (test_bgzf.BgzfTests)
Reproduce BGZF compression for NC_000932 GenBank file ... ok
test_example_wnts_xml (test_bgzf.BgzfTests)
Reproduce BGZF compression for wnts.xml BLAST file ... ok
test_iter_bam_ex1 (test_bgzf.BgzfTests)
Check iteration over SamBam/ex1.bam ... ok
test_iter_example_cor6 (test_bgzf.BgzfTests)
Check iteration over GenBank/cor6_6.gb.bgz ... ok
test_iter_example_fastq (test_bgzf.BgzfTests)
Check iteration over Quality/example.fastq.bgz ... ok
test_iter_example_gb (test_bgzf.BgzfTests)
Check iteration over GenBank/NC_000932.gb.bgz ... ok
test_iter_wnts_xml (test_bgzf.BgzfTests)
Check iteration over Blast/wnts.xml.bgz ... ok
test_random_bam_ex1 (test_bgzf.BgzfTests)
Check random access to SamBam/ex1.bam ... ok
test_random_bam_ex1_header (test_bgzf.BgzfTests)
Check random access to SamBam/ex1_header.bam ... ok
test_random_bam_ex1_refresh (test_bgzf.BgzfTests)
Check random access to SamBam/ex1_refresh.bam ... ok
test_random_example_cor6 (test_bgzf.BgzfTests)
Check random access to GenBank/cor6_6.gb.bgz ... ok
test_random_example_dos_fastq (test_bgzf.BgzfTests)
Check random access to Quality/example_dos.fastq.bgz (DOS newlines) ... ok
test_random_example_fastq (test_bgzf.BgzfTests)
Check random access to Quality/example.fastq.bgz (Unix newlines) ... ok
test_random_wnts_xml (test_bgzf.BgzfTests)
Check random access to Blast/wnts.xml.bgz ... ok
test_text_example_fastq (test_bgzf.BgzfTests)
Check text mode access to Quality/example.fastq.bgz ... ok
test_text_wnts_xml (test_bgzf.BgzfTests)
Check text mode access to Blast/wnts.xml.bgz ... ok
test_write_tell (test_bgzf.BgzfTests)
Check offset works during BGZF writing ... ok
----------------------------------------------------------------------
Ran 1 test in 23.147 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_cellosaurus.py
test_cellosaurus ... ok
test__str__ (test_cellosaurus.TestCellosaurus)
Test string function ... ok
test_parse (test_cellosaurus.TestCellosaurus)
Test parsing function ... ok
test_read (test_cellosaurus.TestCellosaurus)
Test read function ... ok
----------------------------------------------------------------------
Ran 1 test in 0.121 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_codonalign.py
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
test_codonalign ... ok
test_IO (test_codonalign.TestBuildAndIO) ... ok
test_align (test_codonalign.TestCodonAlignment) ... ok
test_seq (test_codonalign.TestCodonSeq) ... ok
test_mk (test_codonalign.Test_MK) ... ok
test_build (test_codonalign.Test_build) ... ok
test_dn_ds (test_codonalign.Test_dn_ds) ... ok
test_dn_ds_matrix (test_codonalign.Test_dn_ds) ... ok
----------------------------------------------------------------------
Ran 1 test in 22.574 seconds
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_geo.py
test_geo ... ok
runTest (__main__.ComparisonTestCase)
test_geo ... ok
----------------------------------------------------------------------
Ran 1 test in 0.072 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_kNN.py
test_kNN ... ok
test_calculate_model (test_kNN.TestKNN) ... ok
test_calculate_probability (test_kNN.TestKNN) ... ok
test_classify (test_kNN.TestKNN) ... ok
test_leave_one_out (test_kNN.TestKNN) ... ok
test_model_accuracy (test_kNN.TestKNN) ... ok
----------------------------------------------------------------------
Ran 1 test in 0.040 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ /usr/bin/python3 run_tests.py --offline -v test_lowess.py
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
test_lowess ... ok
test_Precomputed (test_lowess.test_lowess) ... ok
----------------------------------------------------------------------
Ran 1 test in 0.119 seconds
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_mmtf.py
test_mmtf ... skipping. Error: Install mmtf to use Bio.PDB.mmtf (e.g. pip install mmtf-python)
----------------------------------------------------------------------
Ran 1 test in 0.296 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_mmtf_online.py
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
test_mmtf_online ... skipping. Error: Install mmtf to use Bio.PDB.mmtf (e.g. pip install mmtf-python)
----------------------------------------------------------------------
Ran 1 test in 0.293 seconds
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_motifs.py
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
test_motifs ... ok
test_mixed_alphabets (test_motifs.MotifTestPWM)
Test creating motif with mixed alphabets. ... ok
test_simple (test_motifs.MotifTestPWM)
Test if Bio.motifs PWM scoring works. ... ok
test_with_alt_alphabet (test_motifs.MotifTestPWM)
Test motif search using alternative instance of alphabet. ... ok
test_with_bad_char (test_motifs.MotifTestPWM)
Test if Bio.motifs PWM scoring works with unexpected letters like N. ... ok
test_with_mixed_case (test_motifs.MotifTestPWM)
Test if Bio.motifs PWM scoring works with mixed case. ... ok
test_TFoutput (test_motifs.MotifTestsBasic)
Ensure that we can write proper TransFac output files. ... ok
test_alignace_parsing (test_motifs.MotifTestsBasic)
Test if Bio.motifs can parse AlignAce output files. ... ok
test_format (test_motifs.MotifTestsBasic) ... ok
test_pfm_parsing (test_motifs.MotifTestsBasic)
Test if Bio.motifs can parse JASPAR-style pfm files. ... ok
test_sites_parsing (test_motifs.MotifTestsBasic)
Test if Bio.motifs can parse JASPAR-style sites files. ... ok
test_mast_parser_1 (test_motifs.TestMAST)
Parse motifs/mast.dna.oops.txt file. ... ok
test_mast_parser_2 (test_motifs.TestMAST)
Parse motifs/mast.protein.oops.txt file. ... ok
test_mast_parser_3 (test_motifs.TestMAST)
Parse motifs/mast.protein.tcm.txt file. ... ok
test_meme_parser_1 (test_motifs.TestMEME)
Parsing motifs/meme.out file. ... ok
test_meme_parser_2 (test_motifs.TestMEME)
Parse motifs/meme.dna.oops.txt file. ... ok
test_meme_parser_3 (test_motifs.TestMEME)
Parse motifs/meme.protein.oops.txt file. ... ok
test_meme_parser_4 (test_motifs.TestMEME)
Parse motifs/meme.protein.tcm.txt file. ... ok
test_meme_parser_4_11_4 (test_motifs.TestMEME)
Parse motifs/meme_v_4_11_4.txt file. ... ok
test_transfac_parser (test_motifs.TestTransfac)
Parse motifs/transfac.dat file. ... ok
----------------------------------------------------------------------
Ran 1 test in 0.445 seconds
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_motifs_online.py
test_motifs_online ... skipping. internet not available
----------------------------------------------------------------------
Ran 1 test in 0.254 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_pairwise2.py
test_pairwise2 ... ok
test_clean_alignments (test_pairwise2.TestOtherFunctions)
``_clean_alignments`` removes redundant alignments. ... ok
test_print_matrix (test_pairwise2.TestOtherFunctions)
``print_matrix`` prints nested lists as nice matrices. ... ok
test_function_name (test_pairwise2.TestPairwiseErrorConditions)
Test for wrong function names. ... ok
test_function_parameters (test_pairwise2.TestPairwiseErrorConditions)
Test for number of parameters. ... ok
test_warnings (test_pairwise2.TestPairwiseErrorConditions)
Test for warnings. ... ok
test_extend_penalty1 (test_pairwise2.TestPairwiseExtendPenalty) ... ok
test_extend_penalty2 (test_pairwise2.TestPairwiseExtendPenalty) ... ok
test_globalxx_simple (test_pairwise2.TestPairwiseGlobal) ... ok
test_globalxx_simple2 (test_pairwise2.TestPairwiseGlobal)
Do the same test with sequence order reversed. ... ok
test_list_input (test_pairwise2.TestPairwiseGlobal)
Do a global aligment with sequences supplied as lists. ... ok
test_blosum62 (test_pairwise2.TestPairwiseLocal)
Test localds with blosum62. ... ok
test_localms (test_pairwise2.TestPairwiseLocal)
Two different local alignments. ... ok
test_localxs (test_pairwise2.TestPairwiseLocal) ... ok
test_match_dictionary1 (test_pairwise2.TestPairwiseMatchDictionary) ... ok
test_match_dictionary2 (test_pairwise2.TestPairwiseMatchDictionary) ... ok
test_match_dictionary3 (test_pairwise2.TestPairwiseMatchDictionary) ... ok
test_align_one_char1 (test_pairwise2.TestPairwiseOneCharacter) ... ok
test_align_one_char2 (test_pairwise2.TestPairwiseOneCharacter) ... ok
test_align_one_char3 (test_pairwise2.TestPairwiseOneCharacter) ... ok
test_match_score_open_penalty1 (test_pairwise2.TestPairwiseOpenPenalty) ... ok
test_match_score_open_penalty2 (test_pairwise2.TestPairwiseOpenPenalty) ... ok
test_match_score_open_penalty3 (test_pairwise2.TestPairwiseOpenPenalty) ... ok
test_match_score_open_penalty4 (test_pairwise2.TestPairwiseOpenPenalty) ... ok
test_penalize_end_gaps (test_pairwise2.TestPairwisePenalizeEndgaps) ... ok
test_penalize_end_gaps2 (test_pairwise2.TestPairwisePenalizeEndgaps)
Do the same, but use the generic method (with the same result). ... ok
test_penalize_extend_when_opening (test_pairwise2.TestPairwisePenalizeExtendWhenOpening) ... ok
test_separate_gap_penalties1 (test_pairwise2.TestPairwiseSeparateGapPenalties) ... ok
test_separate_gap_penalties2 (test_pairwise2.TestPairwiseSeparateGapPenalties) ... ok
test_separate_gap_penalties_with_extension (test_pairwise2.TestPairwiseSeparateGapPenaltiesWithExtension) ... ok
test_gap_here_only_1 (test_pairwise2.TestPersiteGapPenalties) ... ok
test_gap_here_only_2 (test_pairwise2.TestPersiteGapPenalties)
Force a bad alignment. ... ok
test_score_only_global (test_pairwise2.TestScoreOnly)
Test ``score_only`` in a global alignment. ... ok
test_score_only_local (test_pairwise2.TestScoreOnly)
Test ``score_only`` in a local alignment. ... ok
----------------------------------------------------------------------
Ran 1 test in 0.228 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_phenotype.py
test_phenotype ... ok
test_PlateRecord (test_phenotype.TestPhenoMicro)
Test basic functionalities of PlateRecord objects ... ok
test_PlateRecord_errors (test_phenotype.TestPhenoMicro)
Test bad arguments with PlateRecord objects ... ok
test_WellRecord (test_phenotype.TestPhenoMicro)
Test basic functionalities of WellRecord objects ... ok
test_bad_fit_args (test_phenotype.TestPhenoMicro)
Test error handling of the fit method. ... ok
test_phenotype_IO (test_phenotype.TestPhenoMicro)
Test basic functionalities of phenotype IO methods ... ok
test_phenotype_IO_errors (test_phenotype.TestPhenoMicro)
Test bad arguments to phenotype IO methods ... ok
----------------------------------------------------------------------
Ran 1 test in 30.342 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_phenotype_fit.py
test_phenotype_fit ... skipping. Install SciPy if you want to use Bio.phenotype fit functionality.
----------------------------------------------------------------------
Ran 1 test in 0.018 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ /usr/bin/python3 run_tests.py --offline -v test_phyml_tool.py
test_phyml_tool ... skipping. Install PhyML 3.0 or later if you want to use the Bio.Phylo.Applications wrapper.
----------------------------------------------------------------------
Ran 1 test in 0.719 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_prodoc.py
test_prodoc ... ok
test_parse_pdoc (test_prodoc.TestProdocParse)
Parsing an excerpt of prosite.doc ... ok
test_read_pdoc00100 (test_prodoc.TestProdocRead)
Reading Prodoc record PDOC00100 ... ok
test_read_pdoc00113 (test_prodoc.TestProdocRead)
Reading Prodoc record PDOC00113 ... ok
test_read_pdoc00144 (test_prodoc.TestProdocRead)
Reading Prodoc record PDOC00144 ... ok
test_read_pdoc00149 (test_prodoc.TestProdocRead)
Reading Prodoc record PDOC00149 ... ok
test_read_pdoc00340 (test_prodoc.TestProdocRead)
Reading Prodoc record PDOC00340 ... ok
test_read_pdoc00424 (test_prodoc.TestProdocRead)
Reading Prodoc record PDOC00424 ... ok
test_read_pdoc00472 (test_prodoc.TestProdocRead)
Reading Prodoc record PDOC00472 ... ok
test_read_pdoc00640 (test_prodoc.TestProdocRead)
Reading Prodoc record PDOC00640 ... ok
test_read_pdoc00787 (test_prodoc.TestProdocRead)
Reading Prodoc record PDOC00787 ... ok
test_read_pdoc0933 (test_prodoc.TestProdocRead)
Reading Prodoc record PDOC00933 ... ok
----------------------------------------------------------------------
Ran 1 test in 0.140 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_prosite1.py
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
test_prosite1 ... ok
test_read1 (test_prosite1.TestPrositeRead)
Parsing Prosite record ps00107.txt ... ok
test_read2 (test_prosite1.TestPrositeRead)
Parsing Prosite record ps00159.txt ... ok
test_read3 (test_prosite1.TestPrositeRead)
Parsing Prosite record ps00165.txt ... ok
----------------------------------------------------------------------
Ran 1 test in 0.300 seconds
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_prosite2.py
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
test_prosite2 ... ok
test_read4 (test_prosite2.TestPrositeRead)
Parsing Prosite record ps00432.txt ... ok
test_read5 (test_prosite2.TestPrositeRead)
Parsing Prosite record ps00488.txt ... ok
test_read6 (test_prosite2.TestPrositeRead)
Parsing Prosite record ps00546.txt ... ok
----------------------------------------------------------------------
Ran 1 test in 0.163 seconds
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_psw.py
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
test_psw ... ok
test_AlignmentColumn_assertions (test_psw.TestPSW) ... ok
test_AlignmentColumn_full (test_psw.TestPSW) ... ok
test_AlignmentColumn_kinds (test_psw.TestPSW) ... ok
test_AlignmentColumn_repr (test_psw.TestPSW) ... ok
test_Alignment_assertions (test_psw.TestPSW) ... ok
test_Alignment_normal (test_psw.TestPSW) ... ok
test_ColumnUnit (test_psw.TestPSW) ... ok
----------------------------------------------------------------------
Ran 1 test in 0.369 seconds
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_raxml_tool.py
test_raxml_tool ... skipping. Install RAxML (binary raxmlHPC) if you want to test the Bio.Phylo.Applications wrapper.
----------------------------------------------------------------------
Ran 1 test in 0.711 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ /usr/bin/python3 run_tests.py --offline -v test_samtools_tool.py
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
test_samtools_tool ... skipping. Install samtools and correctly set the file path to the program
        if you want to use it from Biopython
----------------------------------------------------------------------
Ran 1 test in 0.135 seconds
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ /usr/bin/python3 run_tests.py --offline -v test_seq.py
test_seq ... ok
test_ambiguous_values (test_seq.TestAmbiguousComplements)
Test that other tests do not introduce characters to our values ... ok
test_complement_ambiguous_dna_values (test_seq.TestComplement) ... ok
test_complement_ambiguous_rna_values (test_seq.TestComplement) ... ok
test_complement_incompatible_alphabets (test_seq.TestComplement) ... ok
test_complement_of_dna (test_seq.TestComplement) ... ok
test_complement_of_mixed_dna_rna (test_seq.TestComplement) ... ok
test_complement_of_rna (test_seq.TestComplement) ... ok
test_complement_on_proteins (test_seq.TestComplement)
Test complement shouldn't work on a protein! ... ok
test_reverse_complements (test_seq.TestDoubleReverseComplement)
Test double reverse complement preserves the sequence ... ok
test_add_method (test_seq.TestMutableSeq)
Test adding wrong type to MutableSeq ... ok
test_appending (test_seq.TestMutableSeq) ... ok
test_as_string (test_seq.TestMutableSeq) ... ok
test_complement (test_seq.TestMutableSeq) ... ok
test_complement_dna_string (test_seq.TestMutableSeq) ... ok
test_complement_mixed_aphabets (test_seq.TestMutableSeq) ... ok
test_complement_rna (test_seq.TestMutableSeq) ... ok
test_complement_rna_string (test_seq.TestMutableSeq) ... ok
test_converting_to_immutable (test_seq.TestMutableSeq) ... ok
test_count (test_seq.TestMutableSeq) ... ok
test_delete_stride_slice (test_seq.TestMutableSeq) ... ok
test_deleting_item (test_seq.TestMutableSeq) ... ok
test_deleting_slice (test_seq.TestMutableSeq) ... ok
test_equal_comparison (test_seq.TestMutableSeq)
Test __eq__ comparison method ... ok
test_equal_comparison_of_incompatible_alphabets (test_seq.TestMutableSeq) ... ok
test_extend_method (test_seq.TestMutableSeq) ... ok
test_extend_with_mutable_seq (test_seq.TestMutableSeq) ... ok
test_extract_third_nucleotide (test_seq.TestMutableSeq)
Test extracting every third nucleotide (slicing with stride 3) ... ok
test_first_nucleotide (test_seq.TestMutableSeq) ... ok
test_index (test_seq.TestMutableSeq) ... ok
test_inserting (test_seq.TestMutableSeq) ... ok
test_length (test_seq.TestMutableSeq) ... ok
test_less_than_comparison (test_seq.TestMutableSeq)
Test __lt__ comparison method ... ok
test_less_than_comparison_of_incompatible_alphabets (test_seq.TestMutableSeq) ... ok
test_less_than_comparison_without_alphabet (test_seq.TestMutableSeq) ... ok
test_less_than_or_equal_comparison (test_seq.TestMutableSeq)
Test __le__ comparison method ... ok
test_less_than_or_equal_comparison_of_incompatible_alphabets (test_seq.TestMutableSeq) ... ok
test_less_than_or_equal_comparison_without_alphabet (test_seq.TestMutableSeq) ... ok
test_mutableseq_creation (test_seq.TestMutableSeq)
Test creating MutableSeqs in multiple ways ... ok
test_not_equal_comparison (test_seq.TestMutableSeq)
Test __ne__ comparison method ... ok
test_popping_last_item (test_seq.TestMutableSeq) ... ok
test_radd_method (test_seq.TestMutableSeq) ... ok
test_radd_method_incompatible_alphabets (test_seq.TestMutableSeq) ... ok
test_radd_method_using_seq_object (test_seq.TestMutableSeq) ... ok
test_radd_method_wrong_type (test_seq.TestMutableSeq) ... ok
test_remove_items (test_seq.TestMutableSeq) ... ok
test_repr (test_seq.TestMutableSeq) ... ok
test_reverse (test_seq.TestMutableSeq)
Test using reverse method ... ok
test_reverse_complement (test_seq.TestMutableSeq) ... ok
test_reverse_complement_of_protein (test_seq.TestMutableSeq) ... ok
test_reverse_with_stride (test_seq.TestMutableSeq)
Test reverse using -1 stride ... ok
test_set_wobble_codon_to_n (test_seq.TestMutableSeq)
Test setting wobble codon to N (set slice with stride 3) ... ok
test_setting_item (test_seq.TestMutableSeq) ... ok
test_setting_slices (test_seq.TestMutableSeq) ... ok
test_to_string_method (test_seq.TestMutableSeq) ... ok
test_truncated_repr (test_seq.TestMutableSeq) ... ok
test_reverse_complement (test_seq.TestReverseComplement) ... ok
test_reverse_complement_of_dna (test_seq.TestReverseComplement) ... ok
test_reverse_complement_of_mixed_dna_rna (test_seq.TestReverseComplement) ... ok
test_reverse_complement_of_rna (test_seq.TestReverseComplement) ... ok
test_reverse_complement_on_proteins (test_seq.TestReverseComplement)
Test reverse complement shouldn't work on a protein! ... ok
test_alphabet (test_seq.TestSeq)
Test alphabet of derived Seq object ... ok
test_alphabet_letters (test_seq.TestSeq)
Test nucleotides in DNA Seq ... ok
test_as_string (test_seq.TestSeq)
Test converting Seq to string ... ok
test_concatenation_error (test_seq.TestSeq)
DNA Seq objects cannot be concatenated with Protein Seq objects. ... ok
test_concatenation_of_ambiguous_and_unambiguous_dna (test_seq.TestSeq)
Concatenate Seq object with ambiguous and unambiguous DNA returns ambiguous Seq. ... ok
test_concatenation_of_seq (test_seq.TestSeq) ... ok
test_construction_using_a_seq_object (test_seq.TestSeq)
Test using a Seq object to initialize another Seq object ... ok
test_extract_third_nucleotide (test_seq.TestSeq)
Test extracting every third nucleotide (slicing with stride 3) ... ok
test_first_nucleotide (test_seq.TestSeq)
Test getting first nucleotide of Seq ... ok
test_last_nucleotide (test_seq.TestSeq)
Test getting last nucleotide of Seq ... ok
test_length (test_seq.TestSeq)
Test len method on Seq object ... ok
test_length_concatenated_unambiguous_seq (test_seq.TestSeq)
Test length of concatenated Seq object with unambiguous DNA ... ok
test_repr (test_seq.TestSeq)
Test representation of Seq object ... ok
test_reverse (test_seq.TestSeq)
Test reverse using -1 stride ... ok
test_slicing (test_seq.TestSeq)
Test slicing of Seq ... ok
test_truncated_repr (test_seq.TestSeq) ... ok
test_ungap (test_seq.TestSeq) ... ok
test_adding_generic_nucleotide_with_other_nucleotides (test_seq.TestSeqAddition) ... ok
test_addition_dna_rna_with_generic_nucleotides (test_seq.TestSeqAddition) ... ok
test_addition_dna_with_dna (test_seq.TestSeqAddition) ... ok
test_addition_dna_with_rna (test_seq.TestSeqAddition) ... ok
test_addition_proteins (test_seq.TestSeqAddition) ... ok
test_addition_rna_with_rna (test_seq.TestSeqAddition) ... ok
test_exception_when_added_protein_has_more_than_one_gap_type (test_seq.TestSeqAddition)
Test resulting protein has gap types '-' and '.' ... ok
test_exception_when_added_protein_has_several_stop_codon_types (test_seq.TestSeqAddition)
Test resulting protein has stop codon types '*' and '@' ... ok
test_exception_when_added_rna_has_more_than_one_gap_type (test_seq.TestSeqAddition)
Test resulting sequence has gap types '-' and '.' ... ok
test_exception_when_adding_protein_with_nucleotides (test_seq.TestSeqAddition) ... ok
test_add_method_using_wrong_object (test_seq.TestSeqStringMethods) ... ok
test_append_nucleotides (test_seq.TestSeqStringMethods) ... ok
test_append_proteins (test_seq.TestSeqStringMethods) ... ok
test_contains_method (test_seq.TestSeqStringMethods) ... ok
test_counting_characters (test_seq.TestSeqStringMethods) ... ok
test_endswith (test_seq.TestSeqStringMethods) ... ok
test_equal_comparison_of_incompatible_alphabets (test_seq.TestSeqStringMethods)
Test __eq__ comparison method ... ok
test_exception_when_clashing_alphabets (test_seq.TestSeqStringMethods)
Test by setting up clashing alphabet sequences ... ok
test_finding_characters (test_seq.TestSeqStringMethods) ... ok
test_hash (test_seq.TestSeqStringMethods) ... ok
test_less_than_comparison_of_incompatible_alphabets (test_seq.TestSeqStringMethods)
Test __lt__ comparison method ... ok
test_less_than_or_equal_comparison_of_incompatible_alphabets (test_seq.TestSeqStringMethods)
Test __lt__ comparison method ... ok
test_not_equal_comparsion (test_seq.TestSeqStringMethods)
Test __ne__ comparison method ... ok
test_radd_method (test_seq.TestSeqStringMethods) ... ok
test_radd_method_using_incompatible_alphabets (test_seq.TestSeqStringMethods) ... ok
test_radd_method_using_wrong_object (test_seq.TestSeqStringMethods) ... ok
test_splits (test_seq.TestSeqStringMethods) ... ok
test_startswith (test_seq.TestSeqStringMethods) ... ok
test_string_methods (test_seq.TestSeqStringMethods) ... ok
test_stripping_characters (test_seq.TestSeqStringMethods) ... ok
test_to_string_deprecated_method (test_seq.TestSeqStringMethods) ... ok
test_sequence_alphabets (test_seq.TestSequenceAlphabets)
Sanity test on the test sequence alphabets. ... ok
test_stops (test_seq.TestStopCodons) ... ok
test_translation_of_stops (test_seq.TestStopCodons) ... ok
test_back_transcribe_rna_into_dna (test_seq.TestTranscription) ... ok
test_back_transcribe_rna_string_into_dna (test_seq.TestTranscription) ... ok
test_back_transcription_of_dna (test_seq.TestTranscription)
Test back-transcription shouldn't work on DNA! ... ok
test_back_transcription_of_proteins (test_seq.TestTranscription)
Test back-transcription shouldn't work on a protein! ... ok
test_seq_object_back_transcription_method (test_seq.TestTranscription) ... ok
test_seq_object_transcription_method (test_seq.TestTranscription) ... ok
test_transcription_dna_into_rna (test_seq.TestTranscription) ... ok
test_transcription_dna_string_into_rna (test_seq.TestTranscription) ... ok
test_transcription_of_proteins (test_seq.TestTranscription)
Test transcription shouldn't work on a protein! ... ok
test_transcription_of_rna (test_seq.TestTranscription)
Test transcription shouldn't work on RNA! ... ok
test_alphabet_of_translated_gapped_seq (test_seq.TestTranslating) ... ok
test_alphabets_of_translated_seqs (test_seq.TestTranslating) ... ok
test_gapped_seq_no_gap_char_given (test_seq.TestTranslating) ... ok
test_gapped_seq_no_gap_char_given_and_inferred_from_alphabet (test_seq.TestTranslating) ... ok
test_gapped_seq_with_gap_char_given (test_seq.TestTranslating) ... ok
test_gapped_seq_with_gap_char_given_and_inferred_from_alphabet (test_seq.TestTranslating) ... ok
test_gapped_seq_with_gap_char_given_and_inferred_from_alphabet2 (test_seq.TestTranslating)
Test using stop codon in sequence ... ok
test_gapped_seq_with_stop_codon_and_gap_char_given (test_seq.TestTranslating) ... ok
test_translation (test_seq.TestTranslating) ... ok
test_translation_extra_stop_codon (test_seq.TestTranslating) ... ok
test_translation_incomplete_codon (test_seq.TestTranslating) ... ok
test_translation_of_asparagine (test_seq.TestTranslating) ... ok
test_translation_of_gapped_string_no_gap_char_given (test_seq.TestTranslating) ... ok
test_translation_of_gapped_string_with_gap_char_given (test_seq.TestTranslating) ... ok
test_translation_of_glutamine (test_seq.TestTranslating) ... ok
test_translation_of_invalid_codon (test_seq.TestTranslating) ... ok
test_translation_of_leucine (test_seq.TestTranslating) ... ok
test_translation_of_string (test_seq.TestTranslating) ... ok
test_translation_on_proteins (test_seq.TestTranslating)
Test translation shouldn't work on a protein! ... ok
test_translation_to_stop (test_seq.TestTranslating) ... ok
test_translation_using_cds (test_seq.TestTranslating) ... ok
test_translation_with_bad_table_argument (test_seq.TestTranslating) ... ok
test_translation_with_codon_table_as_table_argument (test_seq.TestTranslating) ... ok
test_translation_wrong_type (test_seq.TestTranslating)
Test translation table cannot be CodonTable ... ok
test_add_method (test_seq.TestUnknownSeq) ... ok
test_back_transcribe (test_seq.TestUnknownSeq) ... ok
test_complement (test_seq.TestUnknownSeq) ... ok
test_complement_of_protein (test_seq.TestUnknownSeq)
Test reverse complement shouldn't work on a protein! ... ok
test_construction (test_seq.TestUnknownSeq) ... ok
test_count (test_seq.TestUnknownSeq) ... ok
test_getitem_method (test_seq.TestUnknownSeq) ... ok
test_length (test_seq.TestUnknownSeq) ... ok
test_lower (test_seq.TestUnknownSeq) ... ok
test_repr (test_seq.TestUnknownSeq) ... ok
test_reverse_complement (test_seq.TestUnknownSeq) ... ok
test_reverse_complement_of_protein (test_seq.TestUnknownSeq) ... ok
test_transcribe (test_seq.TestUnknownSeq) ... ok
test_translation (test_seq.TestUnknownSeq) ... ok
test_translation_of_proteins (test_seq.TestUnknownSeq) ... ok
test_ungap (test_seq.TestUnknownSeq) ... ok
test_upper (test_seq.TestUnknownSeq) ... ok
----------------------------------------------------------------------
Ran 1 test in 0.425 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
C
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_translate.py
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
test_translate ... ok
runTest (__main__.ComparisonTestCase)
test_translate ... ok
----------------------------------------------------------------------
Ran 1 test in 0.260 seconds
+ for test in `ls test_*.py | grep -v chapter | grep -v NCBIXML | grep -v Nexus | grep -v Phylo | grep -v SeqIO | grep -v Tutorial`
+ echo C
C
+ export PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/lib64/python3.6/site-packages
+ /usr/bin/python3 run_tests.py --offline -v test_trie.py
test_trie ... ok
test_get_approximate (test_trie.TestTrie) ... ok
test_get_set (test_trie.TestTrie) ... ok
test_large_save_load (test_trie.TestTrie)
Generate random key/val pairs in three length categories. ... ok
test_prefix (test_trie.TestTrie) ... ok
test_save (test_trie.TestTrie) ... ok
test_with_prefix (test_trie.TestTrie) ... ok
test_find (test_trie.TestTrieFind) ... ok
----------------------------------------------------------------------
Ran 1 test in 110.770 seconds
Skipping any tests requiring internet access
Python version: 3.6.4 (default, Feb  1 2018, 10:33:17) 
[GCC 7.2.1 20170915 (Red Hat 7.2.1-2)]
Operating system: posix linux
+ popd
~/build/BUILD/python-biopython-1.70
+ exit 0
Processing files: python2-biopython-1.70-10.fc27.aarch64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.HRTmJb
+ umask 022
+ cd /builddir/build/BUILD
+ cd python-biopython-1.70
+ DOCDIR=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/share/doc/python2-biopython
+ export LC_ALL=C
+ LC_ALL=C
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/share/doc/python2-biopython
+ cp -pr python2/Scripts /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/share/doc/python2-biopython
+ cp -pr python2/CONTRIB /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/share/doc/python2-biopython
+ cp -pr python2/DEPRECATED /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/share/doc/python2-biopython
+ cp -pr python2/NEWS /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/share/doc/python2-biopython
+ cp -pr python2/README /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/share/doc/python2-biopython
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.MOh3Br
+ umask 022
+ cd /builddir/build/BUILD
+ cd python-biopython-1.70
+ LICENSEDIR=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/share/licenses/python2-biopython
+ export LC_ALL=C
+ LC_ALL=C
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/share/licenses/python2-biopython
+ cp -pr python2/LICENSE /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/share/licenses/python2-biopython
+ exit 0
Provides: python-biopython = 1.70-10.fc27 python-biopython(aarch-64) = 1.70-10.fc27 python2-biopython = 1.70-10.fc27 python2-biopython(aarch-64) = 1.70-10.fc27 python2.7dist(biopython) = 1.70 python2dist(biopython) = 1.70
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libpthread.so.0()(64bit) libpython2.7.so.1.0()(64bit) python(abi) = 2.7 rtld(GNU_HASH)
Obsoletes: python-biopython < 1.70-10.fc27
Processing files: python3-biopython-1.70-10.fc27.aarch64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.2IYTys
+ umask 022
+ cd /builddir/build/BUILD
+ cd python-biopython-1.70
+ DOCDIR=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/share/doc/python3-biopython
+ export LC_ALL=C
+ LC_ALL=C
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/share/doc/python3-biopython
+ cp -pr python3/Scripts /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/share/doc/python3-biopython
+ cp -pr python3/CONTRIB /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/share/doc/python3-biopython
+ cp -pr python3/DEPRECATED /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/share/doc/python3-biopython
+ cp -pr python3/NEWS /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/share/doc/python3-biopython
+ cp -pr python3/README /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/share/doc/python3-biopython
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.KL0Cbw
+ umask 022
+ cd /builddir/build/BUILD
+ cd python-biopython-1.70
+ LICENSEDIR=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/share/licenses/python3-biopython
+ export LC_ALL=C
+ LC_ALL=C
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/share/licenses/python3-biopython
+ cp -pr python3/LICENSE /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/share/licenses/python3-biopython
+ exit 0
Provides: python3-biopython = 1.70-10.fc27 python3-biopython(aarch-64) = 1.70-10.fc27 python3.6dist(biopython) = 1.70 python3dist(biopython) = 1.70
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libpthread.so.0()(64bit) libpython3.6m.so.1.0()(64bit) python(abi) = 3.6 rtld(GNU_HASH)
Processing files: python-biopython-doc-1.70-10.fc27.noarch
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.VsVdk4
+ umask 022
+ cd /builddir/build/BUILD
+ cd python-biopython-1.70
+ DOCDIR=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/share/doc/python-biopython-doc
+ export LC_ALL=C
+ LC_ALL=C
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/share/doc/python-biopython-doc
+ cp -pr python2/Doc /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/share/doc/python-biopython-doc
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.QZ4YrF
+ umask 022
+ cd /builddir/build/BUILD
+ cd python-biopython-1.70
+ LICENSEDIR=/builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/share/licenses/python-biopython-doc
+ export LC_ALL=C
+ LC_ALL=C
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/share/licenses/python-biopython-doc
+ cp -pr python2/LICENSE /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64/usr/share/licenses/python-biopython-doc
+ exit 0
Provides: python-biopython-doc = 1.70-10.fc27
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: python-biopython-debugsource-1.70-10.fc27.aarch64
Provides: python-biopython-debugsource = 1.70-10.fc27 python-biopython-debugsource(aarch-64) = 1.70-10.fc27
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: python-biopython-debuginfo-1.70-10.fc27.aarch64
Provides: python-biopython-debuginfo = 1.70-10.fc27 python-biopython-debuginfo(aarch-64) = 1.70-10.fc27
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: python-biopython-debugsource(aarch-64) = 1.70-10.fc27
Processing files: python2-biopython-debuginfo-1.70-10.fc27.aarch64
Provides: debuginfo(build-id) = 2e6a496049e29a220bba376dd26f903bc04789b0 debuginfo(build-id) = 35b685c6a921610111199d224afb4758cae687fc debuginfo(build-id) = 665ccd991ca4217ada290ee4bb3755392f009a49 debuginfo(build-id) = 77ffb2211775875db8812714088a1276cc4ed948 debuginfo(build-id) = 7e1d21d04c1206aa5b8435a020253745ab8e0d64 debuginfo(build-id) = bd2beb5450983ae40833f6711773f4faf3664b07 debuginfo(build-id) = da076d592b8d2e5262978b7823c2e9804eae2f4a python2-biopython-debuginfo = 1.70-10.fc27 python2-biopython-debuginfo(aarch-64) = 1.70-10.fc27
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: python-biopython-debugsource(aarch-64) = 1.70-10.fc27
Processing files: python3-biopython-debuginfo-1.70-10.fc27.aarch64
Provides: debuginfo(build-id) = 338bdfbae14918ebed0361d6c6f9d96c70dad0e9 debuginfo(build-id) = 6930b78fe4ebeb250ef75cbf405cf3fc72b515f2 debuginfo(build-id) = 8fe0d63a1651f054e06197dbf63f01f6b313a7eb debuginfo(build-id) = c0ff010328a9decb06d1e414eeb433175d43438d debuginfo(build-id) = c217ce8ca9344b4ffdf7ee87b977536d58c9b9dd debuginfo(build-id) = d170c91feba923a87b7aa1f5a9f25be7daa470c7 debuginfo(build-id) = e349db9cff17b54f51092119341693f38b21834d python3-biopython-debuginfo = 1.70-10.fc27 python3-biopython-debuginfo(aarch-64) = 1.70-10.fc27
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: python-biopython-debugsource(aarch-64) = 1.70-10.fc27
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64
Wrote: /builddir/build/RPMS/python2-biopython-1.70-10.fc27.aarch64.rpm
Wrote: /builddir/build/RPMS/python3-biopython-1.70-10.fc27.aarch64.rpm
Wrote: /builddir/build/RPMS/python-biopython-doc-1.70-10.fc27.noarch.rpm
Wrote: /builddir/build/RPMS/python-biopython-debugsource-1.70-10.fc27.aarch64.rpm
Wrote: /builddir/build/RPMS/python-biopython-debuginfo-1.70-10.fc27.aarch64.rpm
Wrote: /builddir/build/RPMS/python2-biopython-debuginfo-1.70-10.fc27.aarch64.rpm
Wrote: /builddir/build/RPMS/python3-biopython-debuginfo-1.70-10.fc27.aarch64.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.YGjORC
+ umask 022
+ cd /builddir/build/BUILD
+ cd python-biopython-1.70
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/python-biopython-1.70-10.fc27.aarch64
+ exit 0
Child return code was: 0