Mock Version: 1.3.4 Mock Version: 1.3.4 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target armv7hl --nodeps /builddir/build/SPECS/lagan.spec'], user='mockbuild'env={'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'SHELL': '/bin/bash', 'LANG': 'en_US.UTF-8', 'HOSTNAME': 'mock', 'TERM': 'vt100', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'HOME': '/builddir'}logger=timeout=172800chrootPath='/var/lib/mock/f27-build-9260937-771982/root'printOutput=Falsenspawn_args=[]shell=Falsegid=425uid=1000) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target armv7hl --nodeps /builddir/build/SPECS/lagan.spec'] with env {'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'SHELL': '/bin/bash', 'LANG': 'en_US.UTF-8', 'HOSTNAME': 'mock', 'TERM': 'vt100', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'HOME': '/builddir'} and shell False Building target platforms: armv7hl Building for target armv7hl Wrote: /builddir/build/SRPMS/lagan-2.0-21.fc27.src.rpm Child return code was: 0 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target armv7hl --nodeps /builddir/build/SPECS/lagan.spec'], user='mockbuild'env={'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'SHELL': '/bin/bash', 'LANG': 'en_US.UTF-8', 'HOSTNAME': 'mock', 'TERM': 'vt100', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'HOME': '/builddir'}logger=timeout=172800chrootPath='/var/lib/mock/f27-build-9260937-771982/root'printOutput=Falsenspawn_args=[]shell=Falsegid=425uid=1000) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target armv7hl --nodeps /builddir/build/SPECS/lagan.spec'] with env {'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'SHELL': '/bin/bash', 'LANG': 'en_US.UTF-8', 'HOSTNAME': 'mock', 'TERM': 'vt100', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'HOME': '/builddir'} and shell False Building target platforms: armv7hl Building for target armv7hl Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.qj5qSP + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf lagan20 + /usr/bin/gzip -dc /builddir/build/SOURCES/lagan20.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd lagan20 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + echo 'Patch #0 (lagan20-chris.patch):' Patch #0 (lagan20-chris.patch): + /usr/bin/patch --no-backup-if-mismatch -p1 -b --suffix .chris --fuzz=0 patching file Readmes/README.FIRST patching file Readmes/README.shuffle patching file Readmes/README.chaos patching file Readmes/README.lagan patching file src/utils/scorealign.c patching file src/utils/Glue.cpp patching file src/utils/mrun.pl patching file src/utils/mrunfile.pl patching file src/utils/mrunpairs.pl patching file src/utils/mviz.pl patching file src/mlagan.c patching file src/prolagan.c patching file src/slagan-mfa.pl patching file src/supermap.pl patching file src/xmfa2mfa.pl patching file utils/mrunpairs.pl patching file utils/draft.pl patching file utils/mrunfile.pl patching file utils/mviz.pl patching file utils/mrun.pl patching file slagan.pl patching file lagan.pl patching file rechaos.pl patching file slagan-mfa.pl patching file supermap.pl patching file xmfa2mfa.pl patching file src/glocal/rightinfluence.cpp patching file src/glocal/score.cpp + sed -i 's/^CC .*$/CC = gcc $(RPM_OPT_FLAGS)/; s/^CPP .*$/CPP = g++ $(RPM_OPT_FLAGS)/' Makefile + sed -i 's|getenv ("LAGAN_DIR")|"/usr/lib/lagan"|g' src/anchors.c src/diagmatrix.c src/fchaos.c src/filebuffer.c src/global.c src/mempage.c src/mlagan.c src/multial.c src/order.c src/prolagan.c src/skiplist.c src/sortlist.c src/thrtrie.c src/translate.c src/utils/bin2bl.c src/utils/bin2mf.c src/utils/cextract.c src/utils/contigorder.c src/utils/cstat.c src/utils/fa2xfa.c src/utils/getbounds.c src/utils/getcontigpos.c src/utils/getlength.c src/utils/getoverlap.c src/utils/overlay.c src/utils/rc.c src/utils/scorealign.c src/utils/scorecontigs.c src/utils/seqmerge.c + sed -i 's|getenv ("LAGAN_DIR")|"/usr/lib/lagan"|g' src/utils/Glue.cpp src/utils/dotplot.cpp + sed -i 's|$ENV{LAGAN_DIR}|"/usr/lib/lagan"|g' anal_gloc.pl lagan.pl rechaos.pl slagan-mfa.pl slagan.pl supermap.pl xmfa2mfa.pl src/anal_gloc.pl src/lagan.pl src/rechaos.pl src/slagan-mfa.pl src/slagan.pl src/supermap.pl src/xmfa2mfa.pl utils/cmerge2.pl utils/draft.pl utils/flipchaos.pl utils/mextract.pl utils/mf2bin.pl utils/mpretty.pl utils/mproject.pl utils/mrun.pl utils/mrunfile.pl utils/mrunpairs.pl utils/msplit.pl utils/mviz.pl src/utils/cmerge2.pl src/utils/draft.pl src/utils/mextract.pl src/utils/mf2bin.pl src/utils/mpretty.pl src/utils/mproject.pl src/utils/mrun.pl src/utils/mrunfile.pl src/utils/mrunpairs.pl src/utils/mviz.pl + sed -i 's|$LAGAN_DIR|/usr/lib/lagan|g' Readmes/README.shuffle src/anchors.c src/diagmatrix.c src/fchaos.c src/filebuffer.c src/global.c src/mempage.c src/mlagan.c src/multial.c src/order.c src/prolagan.c src/skiplist.c src/sortlist.c src/thrtrie.c src/translate.c + sed -i s/getline/GetLine/g src/anchors.c + rm prolagan + chmod -x src/glocal/Makefile src/glocal/default.score src/glocal/glocal src/glocal/glocal.cpp src/glocal/glocal.h src/glocal/io.cpp src/glocal/io.h src/glocal/leftinfluence.cpp src/glocal/leftinfluence.h src/glocal/rightinfluence.cpp src/glocal/rightinfluence.cpp.chris src/glocal/rightinfluence.h src/glocal/score.cpp src/glocal/score.cpp.chris src/glocal/score.h src/glocal/structs.h src/glocal/test.score + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.B1hZ71 + umask 022 + cd /builddir/build/BUILD + cd lagan20 + make -j4 'CFLAGS=-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard' 'CXXFLAGS=-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard' (cd src; make) make[1]: Entering directory '/builddir/build/BUILD/lagan20/src' gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -o ../anchors anchors.c skiplist.c gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -o ../chaos fchaos.c thrtrie.c skiplist.c global.c translate.c filebuffer.c -lm -DCHAOS__FLAG gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -o ../order order.c diagmatrix.c filebuffer.c gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -o ../mlagan mlagan.c multial.c diagmatrix.c skiplist.c filebuffer.c -lm -DMULTIAL__FLAG anchors.c: In function 'hptrcomp': anchors.c:49:7: warning: unused variable 'jt' [-Wunused-variable] int jt = ((hptr*)p2)->isstart; ^~ fchaos.c: In function 'removeDups': fchaos.c:302:24: warning: unused variable 'temp' [-Wunused-variable] hll *i, *j, *jprev, *temp; ^~~~ fchaos.c: In function 'readfile': anchors.c: In function 'doOutput': anchors.c:171:17: warning: unused variable 'bestscore' [-Wunused-variable] int chl=0, i, bestscore=-1; ^~~~~~~~~ anchors.c:171:14: warning: unused variable 'i' [-Wunused-variable] int chl=0, i, bestscore=-1; ^ anchors.c:168:7: warning: variable 'len' set but not used [-Wunused-but-set-variable] int len; ^~~ fchaos.c:357:18: warning: too many arguments for format [-Wformat-extra-args] fprintf(stderr, "WARNING %c converted to N\n", currchar, alpha); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fchaos.c: In function 'chain': anchors.c: In function 'GetLine': anchors.c:232:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(temp, 1024, infile); ^~~~~~~~~~~~~~~~~~~~~~~~~ fchaos.c:401:16: warning: unused variable 'd2' [-Wunused-variable] int i, d1=0, d2=0; ^~ fchaos.c:401:10: warning: unused variable 'd1' [-Wunused-variable] int i, d1=0, d2=0; ^~ fchaos.c:401:7: warning: unused variable 'i' [-Wunused-variable] int i, d1=0, d2=0; ^ fchaos.c: In function 'findPrev': fchaos.c:440:7: warning: unused variable 'doneset' [-Wunused-variable] int doneset = 0; ^~~~~~~ fchaos.c: In function 'doAlgo': fchaos.c:543:24: warning: unused variable 'bestdbaseloc' [-Wunused-variable] int bestqueryloc=-1, bestdbaseloc=-1, numhits; ^~~~~~~~~~~~ fchaos.c:543:7: warning: unused variable 'bestqueryloc' [-Wunused-variable] int bestqueryloc=-1, bestdbaseloc=-1, numhits; ^~~~~~~~~~~~ fchaos.c:542:9: warning: unused variable 'bestscore' [-Wunused-variable] float bestscore=-1, baseval; ^~~~~~~~~ fchaos.c: In function 'main': fchaos.c:885:7: warning: unused variable 'i' [-Wunused-variable] int i; ^ fchaos.c: In function 'saveScore': fchaos.c:970:7: warning: unused variable 'temp' [-Wunused-variable] int temp; ^~~~ fchaos.c: In function 'savenfreeLList': fchaos.c:1137:9: warning: variable 'j' set but not used [-Wunused-but-set-variable] int i,j; ^ fchaos.c: In function 'readfile': fchaos.c:344:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(temp, 255, input); ^~~~~~~~~~~~~~~~~~~~~~~ fchaos.c: In function 'readSubstMatrix': fchaos.c:622:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf (file, "%d", &(substmatrix[(unsigned char) symbs[i]][(unsigned char) symbs[j]])); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fchaos.c:627:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf (file, "%d", &gappenstart); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fchaos.c:628:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf (file, "%d", &gappenext); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mlagan.c: In function 'hptrcomp': mlagan.c:38:7: warning: unused variable 'jt' [-Wunused-variable] int jt = ((hptr*)p2)->isstart; ^~ mlagan.c: In function 'readfile': mlagan.c:93:25: warning: too many arguments for format [-Wformat-extra-args] fprintf(stderr, "Warning: %c converted to 'N'\n", currchar, alpha); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mlagan.c: In function 'getAnchsFromFile': mlagan.c:161:29: warning: unused variable 'first' [-Wunused-variable] hll *myres = 0, *tt = 0, *first = 0; ^~~~~ mlagan.c: In function 'generateAnchors': order.c: In function 'readAncFile': order.c:237:35: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if ((tt->seq1start >= s1start && tt->seq1end <= s1end || s1start == 0 && s1end == 0) && ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ order.c:238:28: warning: suggest parentheses around '&&' within '||' [-Wparentheses] (tt->seq2start >= s2start && tt->seq2end <= s2end || s2start == 0 && s2end == 0)){ ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ mlagan.c:213:8: warning: unused variable 'flip' [-Wunused-variable] char flip = 0; ^~~~ mlagan.c:211:10: warning: unused variable 'temp' [-Wunused-variable] align* temp; ^~~~ mlagan.c: In function 'remakeHLL': mlagan.c:310:10: warning: unused variable 'bestscore' [-Wunused-variable] int i, bestscore=-1; ^~~~~~~~~ mlagan.c:310:7: warning: unused variable 'i' [-Wunused-variable] int i, bestscore=-1; ^ mlagan.c:309:20: warning: unused variable 't3' [-Wunused-variable] hll *temp, *t2, *t3; ^~ mlagan.c:309:15: warning: unused variable 't2' [-Wunused-variable] hll *temp, *t2, *t3; ^~ mlagan.c:307:7: warning: unused variable 'len' [-Wunused-variable] int len; ^~~ mlagan.c: In function 'iterativeImprovement': mlagan.c:485:10: warning: unused variable 'readd' [-Wunused-variable] align *readd, *old, *new; ^~~~~ mlagan.c:483:12: warning: unused variable 'oldscore' [-Wunused-variable] int i=0, oldscore, cutoff; ^~~~~~~~ mlagan.c: In function 'treeToRPN': mlagan.c:528:16: warning: unused variable 'j' [-Wunused-variable] int i=0; int j, k; ^ order.c: In function 'mkBarrel': order.c:274:7: warning: unused variable 'incr' [-Wunused-variable] int incr; ^~~~ order.c: In function 'doAlign': order.c:409:5: warning: implicit declaration of function 'printMFAAlign'; did you mean 'printBinAlign'? [-Wimplicit-function-declaration] printMFAAlign(seq1->lets, seq2->lets, a, seq1->name, seq2->name); ^~~~~~~~~~~~~ printBinAlign anchors.c: In function 'findBestChain': anchors.c:164:10: warning: 'bestptr' may be used uninitialized in this function [-Wmaybe-uninitialized] return (hll*)bestptr->myelem; ^~~~~~~~~~~~~~~~~~~~~ order.c:411:5: warning: implicit declaration of function 'printXMFAAlign'; did you mean 'printTextAlign'? [-Wimplicit-function-declaration] printXMFAAlign(seq1->lets, seq2->lets, a, seq1->name, seq2->name); ^~~~~~~~~~~~~~ printTextAlign order.c: In function 'getChain': order.c:486:7: warning: unused variable 'temp' [-Wunused-variable] int temp; ^~~~ order.c: In function 'saveNeck': order.c:561:6: warning: unused variable 'second' [-Wunused-variable] *second = DMgetDiagStart(mydm, neckdiag, &size2, &x2, &y2); ^~~~~~ order.c:560:9: warning: unused variable 'first' [-Wunused-variable] alel *first = DMgetDiagStart(mydm, neckdiag-1, &size1, &x1, &y1), ^~~~~ order.c: In function 'joinAligns': order.c:586:10: warning: unused variable 'n' [-Wunused-variable] align *n = a->nextalign, *t; ^ order.c: In function 'printBinAlign': order.c:718:18: warning: array subscript has type 'char' [-Wchar-subscripts] left = lets[seq1[s1++]]; ^ order.c:720:19: warning: array subscript has type 'char' [-Wchar-subscripts] right = lets[seq2[s2++]]; ^ order.c: In function 'printMFAAlign': order.c:773:27: warning: unused variable 'nlets' [-Wunused-variable] int nm=0, nga=0, ngb=0, nlets=0; ^~~~~ order.c:773:7: warning: unused variable 'nm' [-Wunused-variable] int nm=0, nga=0, ngb=0, nlets=0; ^~ order.c: In function 'printXMFAAlign': order.c:805:27: warning: unused variable 'nlets' [-Wunused-variable] int nm=0, nga=0, ngb=0, nlets=0; ^~~~~ order.c:805:7: warning: unused variable 'nm' [-Wunused-variable] int nm=0, nga=0, ngb=0, nlets=0; ^~ order.c: In function 'readfile': order.c:61:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(temp, 255, input); ^~~~~~~~~~~~~~~~~~~~~~~ mlagan.c: In function 'main': mlagan.c:1067:5: warning: implicit declaration of function 'printXMFAAlign'; did you mean 'printFASTAAlign'? [-Wimplicit-function-declaration] printXMFAAlign(outfile, final); ^~~~~~~~~~~~~~ printFASTAAlign mlagan.c:942:8: warning: unused variable 'command' [-Wunused-variable] char command[256]; ^~~~~~~ mlagan.c:941:24: warning: unused variable 'y' [-Wunused-variable] int i = 1, j = 1, x, y; ^ mlagan.c:941:21: warning: unused variable 'x' [-Wunused-variable] int i = 1, j = 1, x, y; ^ mlagan.c:939:14: warning: unused variable 'seqfile' [-Wunused-variable] FileBuffer seqfile; ^~~~~~~ mlagan.c: In function 'readfile': mlagan.c:79:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(temp, 255, input); ^~~~~~~~~~~~~~~~~~~~~~~ order.c: In function 'readSubstMatrix': order.c:145:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf (file, "%d", &(substmatrix[(unsigned char) symbs[i]][(unsigned char) symbs[j]])); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ order.c:149:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf (file, "%d", &gapstart); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ order.c:150:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf (file, "%d", &gapcont); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ order.c: In function 'printBinAlign': order.c:725:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ order.c: In function 'printTextAlign': order.c:769:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ mlagan.c: In function 'treeToRPN': mlagan.c:565:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ order.c: In function 'printMFAAlign': order.c:801:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ order.c: In function 'printXMFAAlign': order.c:833:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ skiplist.c: In function 'printSLE': skiplist.c:12:19: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'void *' [-Wformat=] printf(" %d %x\n", tbp->index, tbp->myelem); ~^ ~~~~~~~~~~~ %p skiplist.c: In function 'makeSkLst': skiplist.c:33:7: warning: unused variable 'i' [-Wunused-variable] int i; ^ skiplist.c: In function 'SLinsert': skiplist.c:100:37: warning: unused variable 'tbe' [-Wunused-variable] sle* prev = SLfind(trgt, index), *tbe; ^~~ mlagan.c: In function 'buildTree': mlagan.c:623:53: warning: 'mlj' may be used uninitialized in this function [-Wmaybe-uninitialized] temp = (char*) malloc ((namelens[mli] + namelens[mlj] +4)* sizeof(char)); ~~~~~~~~^~~~~ mlagan.c:623:37: warning: 'mli' may be used uninitialized in this function [-Wmaybe-uninitialized] temp = (char*) malloc ((namelens[mli] + namelens[mlj] +4)* sizeof(char)); ~~~~~~~~^~~~~ gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -o ../prolagan prolagan.c multial.c diagmatrix.c skiplist.c filebuffer.c -lm -DMULTIAL__FLAG prolagan.c: In function 'hptrcomp': prolagan.c:41:7: warning: unused variable 'jt' [-Wunused-variable] int jt = ((hptr*)p2)->isstart; ^~ prolagan.c: In function 'readfile': prolagan.c:93:25: warning: too many arguments for format [-Wformat-extra-args] fprintf(stderr, "Warning: %c converted to 'N'\n", currchar, alpha); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ prolagan.c: In function 'appendAlignProfile': prolagan.c:163:9: warning: unused variable 'j' [-Wunused-variable] int i,j,k; ^ prolagan.c: In function 'readProfile': prolagan.c:198:11: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while ( myseq = FileRead( with_gaps,0,0,VER_MLAGAN )) { ^~~~~ prolagan.c: In function 'getAnchsFromFile': prolagan.c:246:29: warning: unused variable 'first' [-Wunused-variable] hll *myres = 0, *tt = 0, *first = 0; ^~~~~ prolagan.c: In function 'generateAnchors': prolagan.c:298:8: warning: unused variable 'flip' [-Wunused-variable] char flip = 0; ^~~~ prolagan.c:296:10: warning: unused variable 'temp' [-Wunused-variable] align* temp; ^~~~ prolagan.c: In function 'remakeHLL': prolagan.c:395:10: warning: unused variable 'bestscore' [-Wunused-variable] int i, bestscore=-1; ^~~~~~~~~ prolagan.c:395:7: warning: unused variable 'i' [-Wunused-variable] int i, bestscore=-1; ^ prolagan.c:394:20: warning: unused variable 't3' [-Wunused-variable] hll *temp, *t2, *t3; ^~ prolagan.c:394:15: warning: unused variable 't2' [-Wunused-variable] hll *temp, *t2, *t3; ^~ prolagan.c:392:7: warning: unused variable 'len' [-Wunused-variable] int len; ^~~ prolagan.c: In function 'processAnchors': prolagan.c:539:36: warning: unused variable 'uni' [-Wunused-variable] align *first, *second, *result, *uni; ^~~ prolagan.c: In function 'iterativeImprovement': prolagan.c:587:10: warning: unused variable 'readd' [-Wunused-variable] align *readd, *old, *new; ^~~~~ prolagan.c:585:12: warning: unused variable 'oldscore' [-Wunused-variable] int i=0, oldscore, cutoff; ^~~~~~~~ prolagan.c: In function 'treeToRPN': prolagan.c:630:16: warning: unused variable 'j' [-Wunused-variable] int i=0; int j, k; ^ prolagan.c: In function 'main': prolagan.c:1087:5: warning: implicit declaration of function 'printXMFAAlign'; did you mean 'printFASTAAlign'? [-Wimplicit-function-declaration] printXMFAAlign(outfile, final); ^~~~~~~~~~~~~~ printFASTAAlign prolagan.c:966:8: warning: unused variable 'table' [-Wunused-variable] hll* table[MAX_SEQ][MAX_SEQ]; ^~~~~ prolagan.c:960:8: warning: unused variable 'command' [-Wunused-variable] char command[256]; ^~~~~~~ prolagan.c:954:14: warning: unused variable 'seqfile' [-Wunused-variable] FileBuffer seqfile; ^~~~~~~ prolagan.c: In function 'readfile': prolagan.c:79:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(temp, 255, input); ^~~~~~~~~~~~~~~~~~~~~~~ prolagan.c: In function 'treeToRPN': prolagan.c:667:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ diagmatrix.c: In function 'DMsetPtr': diagmatrix.c:155:8: warning: unused variable 'res' [-Wunused-variable] char res; ^~~ diagmatrix.c:154:19: warning: unused variable 'loc' [-Wunused-variable] int dn = x+y-1, loc; ^~~ fchaos.c: In function 'doTranslated': fchaos.c:865:7: warning: 'temp' may be used uninitialized in this function [-Wmaybe-uninitialized] procPairs(currquery, currdbase); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fchaos.c: In function 'main': fchaos.c:955:7: warning: 'temp' may be used uninitialized in this function [-Wmaybe-uninitialized] procPairs(currquery, currdbase); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ thrtrie.c: In function 'makeAlpha': thrtrie.c:33:14: warning: array subscript has type 'char' [-Wchar-subscripts] indeces[*alpha] = i; ^ thrtrie.c:35:18: warning: array subscript has type 'char' [-Wchar-subscripts] else indeces [*alpha] = i++; ^ thrtrie.c: In function 'lookup': thrtrie.c:42:17: warning: array subscript has type 'char' [-Wchar-subscripts] return indeces[c]; ^ thrtrie.c: In function 'insertString': thrtrie.c:174:10: warning: unused variable 'j' [-Wunused-variable] int i, j, wordlen = root->height, letprev, letcurr; ^ In file included from thrtrie.c:13:0: mempage.c: In function 'MPallfree': mempage.c:48:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ multial.c: In function 'getAnchsFromAlign': multial.c:104:9: warning: unused variable 'peakfrac' [-Wunused-variable] float peakfrac; ^~~~~~~~ multial.c:103:19: warning: unused variable 'isfrst' [-Wunused-variable] char ingap = 0, isfrst = 1; ^~~~~~ multial.c:99:30: warning: unused variable 'peakscore' [-Wunused-variable] int currscore=0, oldscore, peakscore; ^~~~~~~~~ multial.c:99:20: warning: unused variable 'oldscore' [-Wunused-variable] int currscore=0, oldscore, peakscore; ^~~~~~~~ multial.c: In function 'unifyAlign': multial.c:188:28: warning: unused variable 'tgc' [-Wunused-variable] int s1 = 0, s2 = 0, tgs, tgc; ^~~ multial.c:188:23: warning: unused variable 'tgs' [-Wunused-variable] int s1 = 0, s2 = 0, tgs, tgc; ^~~ multial.c:187:19: warning: unused variable 'brcount' [-Wunused-variable] int i,j,k, cbc, brcount; ^~~~~~~ multial.c:187:14: warning: unused variable 'cbc' [-Wunused-variable] int i,j,k, cbc, brcount; ^~~ multial.c: In function 'getChain': multial.c:247:7: warning: unused variable 'temp' [-Wunused-variable] int temp; ^~~~ multial.c: In function 'saveNeck': multial.c:358:6: warning: unused variable 'second' [-Wunused-variable] *second = DMgetDiagStart(mydm, neckdiag, &size2, &x2, &y2); ^~~~~~ multial.c:357:9: warning: unused variable 'first' [-Wunused-variable] alel *first = DMgetDiagStart(mydm, neckdiag-1, &size1, &x1, &y1), ^~~~~ multial.c: In function 'joinAligns': filebuffer.c: In function 'FileRead': multial.c:381:10: warning: unused variable 'n' [-Wunused-variable] align *n = a->nextalign, *t; ^ filebuffer.c:123:34: warning: implicit declaration of function 'toupper' [-Wimplicit-function-declaration] temp[i] = (strchr (alphabet, toupper ((char) i)) != 0) ? ^~~~~~~ multial.c: In function 'openGap': multial.c:594:25: warning: unused variable 'i' [-Wunused-variable] int alopen, pen, sav, i; ^ multial.c:594:15: warning: unused variable 'pen' [-Wunused-variable] int alopen, pen, sav, i; ^~~ multial.c: In function 'mkBarrel': multial.c:615:7: warning: unused variable 'incr' [-Wunused-variable] int incr; ^~~~ multial.c: In function 'doNW': multial.c:811:20: warning: variable 'oldneck' set but not used [-Wunused-but-set-variable] int numNecks =0, oldneck =0; ^~~~~~~ multial.c:808:8: warning: unused variable 'rh' [-Wunused-variable] char rh, ptr=0, isneck; ^~ multial.c:807:14: warning: unused variable 'b' [-Wunused-variable] align* a, *b; ^ multial.c:805:11: warning: unused variable 'prevgap' [-Wunused-variable] int tt, prevgap; ^~~~~~~ multial.c:805:7: warning: unused variable 'tt' [-Wunused-variable] int tt, prevgap; ^~ multial.c:804:7: warning: unused variable 'gapend' [-Wunused-variable] int gapend[3]; ^~~~~~ multial.c: In function 'removeSeqByName': multial.c:1062:8: warning: variable 'removed' set but not used [-Wunused-but-set-variable] seq *removed; ^~~~~~~ multial.c: In function 'getSeqNum': multial.c:1073:8: warning: unused variable 'removed' [-Wunused-variable] seq *removed; ^~~~~~~ multial.c: In function 'remapHLLs': multial.c:1262:17: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if (which == 0 && anchs->seq1end - anchs->seq1start < ANCHOR_LENGTH_CUTOFF || ^ multial.c:1104:43: warning: unused variable 'olen' [-Wunused-variable] int mybp, i, *searchint, stmybp, mylen, olen, osize; ^~~~ multial.c: In function 'hllJoin': multial.c:1352:10: warning: unused variable 'j' [-Wunused-variable] int i, j; ^ multial.c:1352:7: warning: unused variable 'i' [-Wunused-variable] int i, j; ^ multial.c: In function 'minHLL': multial.c:1368:10: warning: unused variable 'j' [-Wunused-variable] int i, j; ^ multial.c: In function 'mergeHLLs': multial.c:1408:10: warning: unused variable 'j' [-Wunused-variable] int i, j, mscore; ^ multial.c:1408:7: warning: unused variable 'i' [-Wunused-variable] int i, j, mscore; ^ multial.c: In function 'printTextAlign': multial.c:1466:7: warning: unused variable 'nlets' [-Wunused-variable] int nlets=0; ^~~~~ multial.c:1465:13: warning: unused variable 's2' [-Wunused-variable] int s1=0, s2=0, c, k, i; ^~ multial.c:1465:7: warning: unused variable 's1' [-Wunused-variable] int s1=0, s2=0, c, k, i; ^~ multial.c: In function 'printFASTAAlign': multial.c:1525:7: warning: unused variable 'nlets' [-Wunused-variable] int nlets=0; ^~~~~ multial.c:1524:13: warning: unused variable 's2' [-Wunused-variable] int s1=0, s2=0, c, k, i; ^~ multial.c:1524:7: warning: unused variable 's1' [-Wunused-variable] int s1=0, s2=0, c, k, i; ^~ multial.c: In function 'printXMFAAlign': multial.c:1553:7: warning: unused variable 'nlets' [-Wunused-variable] int nlets=0; ^~~~~ multial.c:1552:13: warning: unused variable 's2' [-Wunused-variable] int s1=0, s2=0, c, k, i; ^~ multial.c:1552:7: warning: unused variable 's1' [-Wunused-variable] int s1=0, s2=0, c, k, i; ^~ multial.c: At top level: multial.c:603:9: warning: 'gapcache' is static but used in inline function 'openGap' which is not static sav = gapcache[(v(ali->numseq - (alopen + ali->cnts[CNTS_CB][w]) + other->cnts[CNTS_GS][ow])) | ^~~~~~~~ multial.c:586:10: warning: 'gapcache' is static but used in inline function 'contGap' which is not static return gapcache[(v(other->cnts[CNTS_GS][ow])) | ^~~~~~~~ multial.c:581:10: warning: 'gapcache' is static but used in inline function 'endGap2' which is not static return gapcache[(v((a->numseq - a->cnts[CNTS_GS][ai] - a->cnts[CNTS_GC][ai]) + b->cnts[CNTS_GE][bi])<<12) | ^~~~~~~~ multial.c:576:10: warning: 'gapcache' is static but used in inline function 'endGap1' which is not static return gapcache[(v((b->numseq - b->cnts[CNTS_GS][bi] - b->cnts[CNTS_GC][bi]) + a->cnts[CNTS_GE][ai]) << 12) | ^~~~~~~~ multial.c:570:10: warning: 'gapcache' is static but used in inline function 'endGap0' which is not static return gapcache[(v(a->cnts[CNTS_GE][ai]+b->cnts[CNTS_GE][bi])<<12) | ^~~~~~~~ multial.c:563:10: warning: 'matchcache' is static but used in inline function 'scoreOpp' which is not static return matchcache[v(other->cnts[0][ow]) | ^~~~~~~~~~ multial.c:556:5: warning: 'gapcache' is static but used in inline function 'matchscore' which is not static gapcache[v(a->cnts[CNTS_GS][ai] + b->cnts[CNTS_GS][bi]) | ^~~~~~~~ multial.c:552:5: warning: 'matchcache' is static but used in inline function 'matchscore' which is not static matchcache[v(a->cnts[0][ai] + b->cnts[0][bi]) | ^~~~~~~~~~ multial.c: In function 'scoreLocal': multial.c:84:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ multial.c: In function 'readSubstMatrix': multial.c:478:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf (file, "%d", &k); ^~~~~~~~~~~~~~~~~~~~~~~ multial.c:486:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf (file, "%d", &gapstart); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ multial.c:487:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf (file, "%d", &gapcont); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ multial.c: In function 'removeSeqByName': multial.c:1068:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ multial.c: In function 'printTextAlign': multial.c:1521:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ multial.c: In function 'printFASTAAlign': multial.c:1549:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ multial.c: In function 'printXMFAAlign': multial.c:1579:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -o ../utils/bin2mf utils/bin2mf.c skiplist.c: In function 'printSLE': skiplist.c:12:19: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'void *' [-Wformat=] printf(" %d %x\n", tbp->index, tbp->myelem); ~^ ~~~~~~~~~~~ %p skiplist.c: In function 'makeSkLst': skiplist.c:33:7: warning: unused variable 'i' [-Wunused-variable] int i; ^ skiplist.c: In function 'SLinsert': skiplist.c:100:37: warning: unused variable 'tbe' [-Wunused-variable] sle* prev = SLfind(trgt, index), *tbe; ^~~ gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -o ../utils/bin2bl utils/bin2bl.c utils/bin2bl.c: In function 'main': utils/bin2bl.c:52:6: warning: suggest explicit braces to avoid ambiguous 'else' [-Wdangling-else] if (argv[1][0] == '-') ^ utils/bin2bl.c:22:7: warning: unused variable 'width' [-Wunused-variable] int width = 60; ^~~~~ global.c: In function 'ismatch': global.c:12:17: warning: array subscript has type 'char' [-Wchar-subscripts] return indeces[a] == indeces[b]; ^ global.c:12:31: warning: array subscript has type 'char' [-Wchar-subscripts] return indeces[a] == indeces[b]; ^ global.c: In function 'global': global.c:34:31: warning: unused variable 'score' [-Wunused-variable] int mm = end2 - start2 + 1, score; ^~~~~ global.c: In function 'printalign': global.c:172:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ multial.c: In function 'getAnchsFromAlign': multial.c:104:9: warning: unused variable 'peakfrac' [-Wunused-variable] float peakfrac; ^~~~~~~~ multial.c:103:19: warning: unused variable 'isfrst' [-Wunused-variable] char ingap = 0, isfrst = 1; ^~~~~~ multial.c:99:30: warning: unused variable 'peakscore' [-Wunused-variable] int currscore=0, oldscore, peakscore; ^~~~~~~~~ multial.c:99:20: warning: unused variable 'oldscore' [-Wunused-variable] int currscore=0, oldscore, peakscore; ^~~~~~~~ multial.c: In function 'unifyAlign': multial.c:188:28: warning: unused variable 'tgc' [-Wunused-variable] int s1 = 0, s2 = 0, tgs, tgc; ^~~ multial.c:188:23: warning: unused variable 'tgs' [-Wunused-variable] int s1 = 0, s2 = 0, tgs, tgc; ^~~ multial.c:187:19: warning: unused variable 'brcount' [-Wunused-variable] int i,j,k, cbc, brcount; ^~~~~~~ multial.c:187:14: warning: unused variable 'cbc' [-Wunused-variable] int i,j,k, cbc, brcount; ^~~ multial.c: In function 'getChain': multial.c:247:7: warning: unused variable 'temp' [-Wunused-variable] int temp; ^~~~ multial.c: In function 'saveNeck': multial.c:358:6: warning: unused variable 'second' [-Wunused-variable] *second = DMgetDiagStart(mydm, neckdiag, &size2, &x2, &y2); ^~~~~~ multial.c:357:9: warning: unused variable 'first' [-Wunused-variable] alel *first = DMgetDiagStart(mydm, neckdiag-1, &size1, &x1, &y1), ^~~~~ multial.c: In function 'joinAligns': multial.c:381:10: warning: unused variable 'n' [-Wunused-variable] align *n = a->nextalign, *t; ^ multial.c: In function 'openGap': multial.c:594:25: warning: unused variable 'i' [-Wunused-variable] int alopen, pen, sav, i; ^ multial.c:594:15: warning: unused variable 'pen' [-Wunused-variable] int alopen, pen, sav, i; ^~~ multial.c: In function 'mkBarrel': multial.c:615:7: warning: unused variable 'incr' [-Wunused-variable] int incr; ^~~~ multial.c: In function 'doNW': multial.c:811:20: warning: variable 'oldneck' set but not used [-Wunused-but-set-variable] int numNecks =0, oldneck =0; ^~~~~~~ multial.c:808:8: warning: unused variable 'rh' [-Wunused-variable] char rh, ptr=0, isneck; ^~ multial.c:807:14: warning: unused variable 'b' [-Wunused-variable] align* a, *b; ^ multial.c:805:11: warning: unused variable 'prevgap' [-Wunused-variable] int tt, prevgap; ^~~~~~~ multial.c:805:7: warning: unused variable 'tt' [-Wunused-variable] int tt, prevgap; ^~ multial.c:804:7: warning: unused variable 'gapend' [-Wunused-variable] int gapend[3]; ^~~~~~ multial.c: In function 'removeSeqByName': multial.c:1062:8: warning: variable 'removed' set but not used [-Wunused-but-set-variable] seq *removed; ^~~~~~~ multial.c: In function 'getSeqNum': multial.c:1073:8: warning: unused variable 'removed' [-Wunused-variable] seq *removed; ^~~~~~~ multial.c: In function 'remapHLLs': multial.c:1262:17: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if (which == 0 && anchs->seq1end - anchs->seq1start < ANCHOR_LENGTH_CUTOFF || ^ multial.c:1104:43: warning: unused variable 'olen' [-Wunused-variable] int mybp, i, *searchint, stmybp, mylen, olen, osize; ^~~~ multial.c: In function 'hllJoin': multial.c:1352:10: warning: unused variable 'j' [-Wunused-variable] int i, j; ^ multial.c:1352:7: warning: unused variable 'i' [-Wunused-variable] int i, j; ^ multial.c: In function 'minHLL': multial.c:1368:10: warning: unused variable 'j' [-Wunused-variable] int i, j; ^ multial.c: In function 'mergeHLLs': multial.c:1408:10: warning: unused variable 'j' [-Wunused-variable] int i, j, mscore; ^ multial.c:1408:7: warning: unused variable 'i' [-Wunused-variable] int i, j, mscore; ^ multial.c: In function 'printTextAlign': multial.c:1466:7: warning: unused variable 'nlets' [-Wunused-variable] int nlets=0; ^~~~~ multial.c:1465:13: warning: unused variable 's2' [-Wunused-variable] int s1=0, s2=0, c, k, i; ^~ multial.c:1465:7: warning: unused variable 's1' [-Wunused-variable] int s1=0, s2=0, c, k, i; ^~ multial.c: In function 'printFASTAAlign': multial.c:1525:7: warning: unused variable 'nlets' [-Wunused-variable] int nlets=0; ^~~~~ multial.c:1524:13: warning: unused variable 's2' [-Wunused-variable] int s1=0, s2=0, c, k, i; ^~ multial.c:1524:7: warning: unused variable 's1' [-Wunused-variable] int s1=0, s2=0, c, k, i; ^~ multial.c: In function 'printXMFAAlign': multial.c:1553:7: warning: unused variable 'nlets' [-Wunused-variable] int nlets=0; ^~~~~ multial.c:1552:13: warning: unused variable 's2' [-Wunused-variable] int s1=0, s2=0, c, k, i; ^~ multial.c:1552:7: warning: unused variable 's1' [-Wunused-variable] int s1=0, s2=0, c, k, i; ^~ multial.c: At top level: multial.c:603:9: warning: 'gapcache' is static but used in inline function 'openGap' which is not static sav = gapcache[(v(ali->numseq - (alopen + ali->cnts[CNTS_CB][w]) + other->cnts[CNTS_GS][ow])) | ^~~~~~~~ multial.c:586:10: warning: 'gapcache' is static but used in inline function 'contGap' which is not static return gapcache[(v(other->cnts[CNTS_GS][ow])) | ^~~~~~~~ multial.c:581:10: warning: 'gapcache' is static but used in inline function 'endGap2' which is not static return gapcache[(v((a->numseq - a->cnts[CNTS_GS][ai] - a->cnts[CNTS_GC][ai]) + b->cnts[CNTS_GE][bi])<<12) | ^~~~~~~~ multial.c:576:10: warning: 'gapcache' is static but used in inline function 'endGap1' which is not static return gapcache[(v((b->numseq - b->cnts[CNTS_GS][bi] - b->cnts[CNTS_GC][bi]) + a->cnts[CNTS_GE][ai]) << 12) | ^~~~~~~~ multial.c:570:10: warning: 'gapcache' is static but used in inline function 'endGap0' which is not static return gapcache[(v(a->cnts[CNTS_GE][ai]+b->cnts[CNTS_GE][bi])<<12) | ^~~~~~~~ multial.c:563:10: warning: 'matchcache' is static but used in inline function 'scoreOpp' which is not static return matchcache[v(other->cnts[0][ow]) | ^~~~~~~~~~ multial.c:556:5: warning: 'gapcache' is static but used in inline function 'matchscore' which is not static gapcache[v(a->cnts[CNTS_GS][ai] + b->cnts[CNTS_GS][bi]) | ^~~~~~~~ multial.c:552:5: warning: 'matchcache' is static but used in inline function 'matchscore' which is not static matchcache[v(a->cnts[0][ai] + b->cnts[0][bi]) | ^~~~~~~~~~ multial.c: In function 'scoreLocal': multial.c:84:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ multial.c: In function 'readSubstMatrix': multial.c:478:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf (file, "%d", &k); ^~~~~~~~~~~~~~~~~~~~~~~ multial.c:486:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf (file, "%d", &gapstart); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ multial.c:487:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf (file, "%d", &gapcont); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ multial.c: In function 'removeSeqByName': multial.c:1068:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -o ../utils/cextract utils/cextract.c multial.c: In function 'printTextAlign': multial.c:1521:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ multial.c: In function 'printFASTAAlign': multial.c:1549:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ multial.c: In function 'printXMFAAlign': multial.c:1579:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ utils/cextract.c: In function 'getLength': utils/cextract.c:16:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets (buffer, 1024, file); ^~~~~~~~~~~~~~~~~~~~~~~~~~ utils/cextract.c: In function 'readfile': utils/cextract.c:41:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets (buffer, 1024, file); ^~~~~~~~~~~~~~~~~~~~~~~~~~ translate.c: In function 'toPeptide': translate.c:9:10: warning: unused variable 'j' [-Wunused-variable] int i, j, sum=0, mask = 0; ^ utils/cextract.c:59:8: warning: 'ch' may be used uninitialized in this function [-Wmaybe-uninitialized] if (ch == '>') ungetc (ch, file); ^ filebuffer.c: In function 'FileRead': filebuffer.c:123:34: warning: implicit declaration of function 'toupper' [-Wimplicit-function-declaration] temp[i] = (strchr (alphabet, toupper ((char) i)) != 0) ? ^~~~~~~ gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -o ../utils/cstat utils/cstat.c utils/cstat.c: In function 'cntlets': utils/cstat.c:51:10: warning: implicit declaration of function 'isspace' [-Wimplicit-function-declaration] if (!isspace(currchar)) { ^~~~~~~ utils/cstat.c:52:18: warning: implicit declaration of function 'toupper' [-Wimplicit-function-declaration] currchar = toupper(currchar); ^~~~~~~ utils/cstat.c: In function 'main': utils/cstat.c:234:7: warning: unused variable 'i' [-Wunused-variable] int i; ^ utils/cstat.c: In function 'cntlets': utils/cstat.c:44:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(temp, 255, input); ^~~~~~~~~~~~~~~~~~~~~~~ utils/cstat.c: In function 'readseq': utils/cstat.c:67:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(temp, 255, input); ^~~~~~~~~~~~~~~~~~~~~~~ gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -o ../utils/contigorder utils/contigorder.c utils/contigorder.c: In function 'getFileInfo': utils/contigorder.c:15:57: warning: format '%s' expects a matching 'char *' argument [-Wformat=] fprintf (stderr, "contigorder: Error opening file: %s\n"); ~^ utils/contigorder.c:26:18: warning: unknown conversion type character '&' in format [-Wformat=] fscanf (file, "%&d", &dummy); ^ utils/contigorder.c:26:16: warning: too many arguments for format [-Wformat-extra-args] fscanf (file, "%&d", &dummy); ^~~~~ utils/contigorder.c: In function 'getScores': utils/contigorder.c:52:57: warning: format '%s' expects a matching 'char *' argument [-Wformat=] fprintf (stderr, "contigorder: Error opening file: %s\n"); ~^ utils/contigorder.c: In function 'solveOrder': utils/contigorder.c:176:30: warning: unused variable 'ptr' [-Wunused-variable] int **best, *first, *last, ptr, newScore, **scoreOf; ^~~ utils/contigorder.c: In function 'getFileInfo': utils/contigorder.c:19:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf (file, "numContigs = %d\n", numContigs); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ utils/contigorder.c:20:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf (file, "seqLen = %d\n", seqLen); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ utils/contigorder.c:26:2: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf (file, "%&d", &dummy); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ utils/contigorder.c: In function 'getScores': utils/contigorder.c:56:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf (file, "numContigs = %*d\n"); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ utils/contigorder.c:57:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf (file, "seqLen = %*d\n"); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ utils/contigorder.c:63:2: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf (file, "%d", &((*score)[i][j])); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -o ../utils/getbounds utils/getbounds.c utils/contigorder.c: In function 'solveOrder': utils/contigorder.c:253:17: warning: 'bestRange' may be used uninitialized in this function [-Wmaybe-uninitialized] rangeList[l] = bestRange; ~~~~~~~~~~~~~^~~~~~~~~~~ utils/contigorder.c:251:22: warning: 'bestState' may be used uninitialized in this function [-Wmaybe-uninitialized] if (newScore == best[bestState][bestRange]){ ^ utils/getbounds.c: In function 'main': utils/getbounds.c:32:27: warning: unused variable 'ext' [-Wunused-variable] int S1B, S1E, S2B, S2E, ext, len1, len2; ^~~ utils/getbounds.c: In function 'getLength': utils/getbounds.c:18:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets (buffer, 1024, file); ^~~~~~~~~~~~~~~~~~~~~~~~~~ diagmatrix.c: In function 'DMsetPtr': diagmatrix.c:155:8: warning: unused variable 'res' [-Wunused-variable] char res; ^~~ diagmatrix.c:154:19: warning: unused variable 'loc' [-Wunused-variable] int dn = x+y-1, loc; ^~~ gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -o ../utils/getlength utils/getlength.c utils/getlength.c: In function 'main': utils/getlength.c:20:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets (buffer, BUF_SIZE, file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -o ../utils/getoverlap utils/getoverlap.c gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -o ../utils/rc utils/rc.c skiplist.c: In function 'printSLE': skiplist.c:12:19: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'void *' [-Wformat=] printf(" %d %x\n", tbp->index, tbp->myelem); ~^ ~~~~~~~~~~~ %p skiplist.c: In function 'makeSkLst': skiplist.c:33:7: warning: unused variable 'i' [-Wunused-variable] int i; ^ skiplist.c: In function 'SLinsert': skiplist.c:100:37: warning: unused variable 'tbe' [-Wunused-variable] sle* prev = SLfind(trgt, index), *tbe; ^~~ utils/rc.c: In function 'main': utils/rc.c:39:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(temp, 255, stdin); ^~~~~~~~~~~~~~~~~~~~~~~ gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -o ../utils/seqmerge utils/seqmerge.c utils/seqmerge.c: In function 'main': utils/seqmerge.c:33:15: warning: suggest parentheses around comparison in operand of '^' [-Wparentheses] if (written ^ 60 != 0) printf ("\n"); ^ utils/seqmerge.c:19:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets (buffer, 1024, file); ^~~~~~~~~~~~~~~~~~~~~~~~~~ filebuffer.c: In function 'FileRead': filebuffer.c:123:34: warning: implicit declaration of function 'toupper' [-Wimplicit-function-declaration] temp[i] = (strchr (alphabet, toupper ((char) i)) != 0) ? ^~~~~~~ gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -o ../utils/scorealign utils/scorealign.c -lm gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -o ../utils/scorecontigs utils/scorecontigs.c -lm utils/scorealign.c: In function 'getSequence': utils/scorealign.c:262:8: warning: variable 'prevch' set but not used [-Wunused-but-set-variable] char prevch = '~'; ^~~~~~ utils/scorealign.c: In function 'getSequences': utils/scorealign.c:322:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while (newseq = getSequence (file, &si, &ss, &se, &sd, &sc)){ ^~~~~~ utils/scorealign.c:310:7: warning: unused variable 'i' [-Wunused-variable] int i, si, ss, se; ^ utils/scorealign.c: In function 'processSequences': utils/scorealign.c:353:10: warning: unused variable 'j' [-Wunused-variable] int i, j; ^ utils/scorealign.c: In function 'getSequence': utils/scorealign.c:266:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets (line, 1024, file); ^~~~~~~~~~~~~~~~~~~~~~~~ utils/scorealign.c: In function 'readScoreMatrix': utils/scorealign.c:411:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets (line, 1024, file); ^~~~~~~~~~~~~~~~~~~~~~~~ utils/scorealign.c:419:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf (file, "%1s", &(line[0])); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ utils/scorealign.c:421:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf (file, "%d", &k); ^~~~~~~~~~~~~~~~~~~~~~~ utils/scorealign.c:426:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf (file, "%d%d", &gapopen, &gapcont); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ diagmatrix.c: In function 'DMsetPtr': diagmatrix.c:155:8: warning: unused variable 'res' [-Wunused-variable] char res; ^~~ diagmatrix.c:154:19: warning: unused variable 'loc' [-Wunused-variable] int dn = x+y-1, loc; ^~~ gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -o ../utils/getcontigpos utils/getcontigpos.c utils/scorecontigs.c: In function 'cntlets': utils/scorecontigs.c:63:10: warning: implicit declaration of function 'isspace' [-Wimplicit-function-declaration] if (!isspace(currchar)) { ^~~~~~~ utils/scorecontigs.c:64:18: warning: implicit declaration of function 'toupper' [-Wimplicit-function-declaration] currchar = toupper(currchar); ^~~~~~~ utils/scorecontigs.c:65:27: warning: implicit declaration of function 'isalpha' [-Wimplicit-function-declaration] if (!lettersonly || isalpha (currchar)){ ^~~~~~~ utils/scorecontigs.c: In function 'analyze': utils/scorecontigs.c:344:13: warning: unused variable 'k' [-Wunused-variable] int i, j, k; ^ utils/scorecontigs.c: In function 'main': utils/scorecontigs.c:384:38: warning: format '%s' expects argument of type 'char *', but argument 6 has type 'char (*)[1024]' [-Wformat=] if (fscanf (filelist, "%d %d %d %s\n", &(num[numseqs]), &(offs1[numseqs]), &(offs2[numseqs]), &(contignames[numseqs])) == 4){ ~^ ~~~~~~~~~~~~~~~~~~~~~~~ utils/getcontigpos.c: In function 'print': utils/scorecontigs.c: In function 'cntlets': utils/scorecontigs.c:55:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(temp, 1024, input); ^~~~~~~~~~~~~~~~~~~~~~~~ utils/getcontigpos.c:66:46: warning: unused variable 'j' [-Wunused-variable] int i = 0, pos = 0, pos2 = 0, written = 0, j = 0; ^ utils/scorecontigs.c: In function 'readseq': utils/scorecontigs.c:81:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets (temp, 1024, input); ^~~~~~~~~~~~~~~~~~~~~~~~~ utils/getcontigpos.c:66:33: warning: unused variable 'written' [-Wunused-variable] int i = 0, pos = 0, pos2 = 0, written = 0, j = 0; ^~~~~~~ utils/getcontigpos.c: In function 'getLength': utils/getcontigpos.c:16:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets (buffer, 1024, file); ^~~~~~~~~~~~~~~~~~~~~~~~~~ utils/getcontigpos.c: In function 'readfile': utils/getcontigpos.c:41:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets (buffer, 1024, file); ^~~~~~~~~~~~~~~~~~~~~~~~~~ utils/getcontigpos.c:59:8: warning: 'ch' may be used uninitialized in this function [-Wmaybe-uninitialized] if (ch == '>') ungetc (ch, file); ^ gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -o ../utils/fa2xfa utils/fa2xfa.c utils/fa2xfa.c: In function 'print': utils/fa2xfa.c:81:36: warning: unused variable 'j' [-Wunused-variable] int i = 0, pos = 0, written = 0, j = 0; ^ utils/fa2xfa.c:81:14: warning: unused variable 'pos' [-Wunused-variable] int i = 0, pos = 0, written = 0, j = 0; ^~~ utils/fa2xfa.c: In function 'getLength': utils/fa2xfa.c:30:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets (buffer, 1024, file); ^~~~~~~~~~~~~~~~~~~~~~~~~~ utils/fa2xfa.c: In function 'readfile': utils/fa2xfa.c:55:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets (buffer, 1024, file); ^~~~~~~~~~~~~~~~~~~~~~~~~~ skiplist.c: In function 'printSLE': skiplist.c:12:19: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'void *' [-Wformat=] printf(" %d %x\n", tbp->index, tbp->myelem); ~^ ~~~~~~~~~~~ %p skiplist.c: In function 'makeSkLst': skiplist.c:33:7: warning: unused variable 'i' [-Wunused-variable] int i; ^ skiplist.c: In function 'SLinsert': skiplist.c:100:37: warning: unused variable 'tbe' [-Wunused-variable] sle* prev = SLfind(trgt, index), *tbe; ^~~ utils/fa2xfa.c:74:8: warning: 'ch' may be used uninitialized in this function [-Wmaybe-uninitialized] if (ch == '>') ungetc (ch, file); ^ filebuffer.c: In function 'FileRead': filebuffer.c:123:34: warning: implicit declaration of function 'toupper' [-Wimplicit-function-declaration] temp[i] = (strchr (alphabet, toupper ((char) i)) != 0) ? ^~~~~~~ g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -o ../utils/Glue utils/Glue.cpp g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -o ../utils/dotplot utils/dotplot.cpp gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -o ../utils/overlay utils/overlay.c utils/overlay.c: In function 'read_align': utils/overlay.c:119:10: warning: implicit declaration of function 'isspace' [-Wimplicit-function-declaration] if (!isspace(currchar)) { ^~~~~~~ utils/overlay.c:120:19: warning: implicit declaration of function 'toupper' [-Wimplicit-function-declaration] checkchar = toupper(currchar); ^~~~~~~ utils/overlay.c:101:30: warning: unused variable 'tt' [-Wunused-variable] char currchar, checkchar, *tt; ^~ utils/overlay.c: In function 'read_sequences': utils/overlay.c:176:19: warning: unused variable 'breaker' [-Wunused-variable] int i, j, kmer, breaker; ^~~~~~~ utils/overlay.c:176:13: warning: unused variable 'kmer' [-Wunused-variable] int i, j, kmer, breaker; ^~~~ utils/overlay.c:176:10: warning: unused variable 'j' [-Wunused-variable] int i, j, kmer, breaker; ^ utils/overlay.c: In function 'main': utils/overlay.c:232:16: warning: unused variable 'test' [-Wunused-variable] float ttree, test; ^~~~ utils/overlay.c:232:9: warning: unused variable 'ttree' [-Wunused-variable] float ttree, test; ^~~~~ utils/overlay.c:231:7: warning: unused variable 'moved' [-Wunused-variable] int moved, i; ^~~~~ utils/overlay.c:230:8: warning: unused variable 'string_tree' [-Wunused-variable] char string_tree[16537]; //noone will ever need more :))) ^~~~~~~~~~~ utils/overlay.c: In function 'read_align': utils/overlay.c:109:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(temp, 255, input); ^~~~~~~~~~~~~~~~~~~~~~~ utils/dotplot.cpp: In function 'int main(int, char**)': utils/dotplot.cpp:6:27: warning: variable 'pa' set but not used [-Wunused-but-set-variable] int s1b, s1e, s2b, s2e, pa, pb, maxa = 0, maxb = 0; ^~ utils/dotplot.cpp:6:31: warning: variable 'pb' set but not used [-Wunused-but-set-variable] int s1b, s1e, s2b, s2e, pa, pb, maxa = 0, maxb = 0; ^~ utils/dotplot.cpp:37:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets (buffer, 105, file); ~~~~~~^~~~~~~~~~~~~~~~~~~ utils/dotplot.cpp:74:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets (buffer, 105, file); ~~~~~~^~~~~~~~~~~~~~~~~~~ utils/dotplot.cpp:97:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets (buffer, 105, file); ~~~~~~^~~~~~~~~~~~~~~~~~~ utils/Glue.cpp: In function 'void readScoreMatrix(char*)': utils/Glue.cpp:33:15: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] lagan_dir = "/usr/lib/lagan"; ^~~~~~~~~~~~~~~~ utils/Glue.cpp: In function 'void calculateScoreMatrix(int)': utils/Glue.cpp:60:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] char *alpha = "ATCG"; ^~~~~~ utils/Glue.cpp:68:44: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] readScoreMatrix (NUCLEOTIDE_MATRIX_FILE); ^ utils/Glue.cpp: In function 'int countLets(SafeVector&)': utils/Glue.cpp:228:24: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if (data[i] >= 'A' && data[i] <= 'Z' || data[i] >= 'a' && data[i] <= 'z') utils/Glue.cpp: In function 'int main(int, char**)': utils/Glue.cpp:372:19: warning: variable 'end1' set but not used [-Wunused-but-set-variable] int begin1 = 1, end1 = 1; ^~~~ utils/Glue.cpp: In function 'void readScoreMatrix(char*)': utils/Glue.cpp:40:9: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets (line, 1024, file); ~~~~~~^~~~~~~~~~~~~~~~~~ utils/Glue.cpp:48:12: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf (file, "%1s", &(line[0])); ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ utils/Glue.cpp:50:14: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf (file, "%d", &k); ~~~~~~~^~~~~~~~~~~~~~~~ utils/Glue.cpp:55:10: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf (file, "%d%d", &gapopen, &gapcont); ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (cd glocal; make) make[2]: Entering directory '/builddir/build/BUILD/lagan20/src/glocal' g++ -Wno-deprecated -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -I./ -c glocal.cpp g++ -Wno-deprecated -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -I./ -c io.cpp g++ -Wno-deprecated -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -I./ -c rightinfluence.cpp g++ -Wno-deprecated -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -I./ -c leftinfluence.cpp In file included from ./score.h:4:0, from glocal.cpp:1: glocal.cpp: In function 'int main(int, char**)': ./structs.h:31:50: warning: suggest parentheses around '+' inside '<<' [-Wparentheses] #define TOTALSHIFT UPSTRANDBITS + DOWNSTRANDBITS + RELPOSBITS ^ glocal.cpp:64:16: note: in expansion of macro 'TOTALSHIFT' for (i=0;i<1<>' [-Wparentheses] #define RELPOSSHIFT UPSTRANDBITS + DOWNSTRANDBITS ^ leftinfluence.cpp:135:22: note: in expansion of macro 'RELPOSSHIFT' if (((scoreIndex >> RELPOSSHIFT) & 1) == LEFT) { ^~~~~~~~~~~ In file included from ./rightinfluence.h:4:0, from rightinfluence.cpp:1: rightinfluence.cpp: In function 'void initRI(RI*, long long int)': ./structs.h:30:34: warning: suggest parentheses around '+' inside '>>' [-Wparentheses] #define RELPOSSHIFT UPSTRANDBITS + DOWNSTRANDBITS ^ rightinfluence.cpp:9:22: note: in expansion of macro 'RELPOSSHIFT' if (((scoreIndex >> RELPOSSHIFT) & 1) == LEFT) { ^~~~~~~~~~~ rightinfluence.cpp: In function 'long long int RICommitEndPoint(RI*, Fragment*)': ./structs.h:30:34: warning: suggest parentheses around '+' inside '<<' [-Wparentheses] #define RELPOSSHIFT UPSTRANDBITS + DOWNSTRANDBITS ^ rightinfluence.cpp:119:85: note: in expansion of macro 'RELPOSSHIFT' int possibleCase = NEGATIVE << DOWNSTRANDSHIFT | NEGATIVE <::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Point&}; _Tp = Point; _Alloc = std::allocator]': /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector::iterator {aka __gnu_cxx::__normal_iterator >}' changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Fragment}; _Tp = Fragment; _Alloc = std::allocator]': /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector::iterator {aka __gnu_cxx::__normal_iterator >}' changed in GCC 7.1 /usr/include/c++/7/bits/vector.tcc: In function 'long long int readInput(char*)': /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wno-deprecated -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -I./ -c score.cpp In file included from /usr/include/c++/7/algorithm:62:0, from io.cpp:4: /usr/include/c++/7/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]': /usr/include/c++/7/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/7/bits/stl_algo.h: In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/include/c++/7/bits/stl_algo.h:1880:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __final_insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_algo.h:1880:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/7/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_algo.h:61:0, from /usr/include/c++/7/algorithm:62, from io.cpp:4: /usr/include/c++/7/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = Point; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/include/c++/7/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/7/algorithm:62:0, from io.cpp:4: /usr/include/c++/7/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/7/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from ./structs.h:6, from io.cpp:1: /usr/include/c++/7/bits/stl_vector.h: In function 'void createPointLists(long long int)': /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/7/algorithm:62:0, from io.cpp:4: /usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/7/bits/stl_algo.h:1971:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__final_insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/7/bits/stl_algo.h:1971:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__final_insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/map:60:0, from ./structs.h:7, from ./leftinfluence.h:4, from leftinfluence.cpp:1: /usr/include/c++/7/bits/stl_tree.h: In member function 'void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_erase_aux(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator) [with _Key = Point; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = paircomp; _Alloc = std::allocator >]': /usr/include/c++/7/bits/stl_tree.h:2470:5: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, paircomp, std::allocator > >::const_iterator {aka std::_Rb_tree_const_iterator >}' changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_tree.h: In function 'void DeleteIntersectionPoint(std::multimap::iterator, std::map >, longlongCompare2>::iterator, std::map >, longlongCompare2>::iterator)': /usr/include/c++/7/bits/stl_tree.h:1125:14: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, paircomp, std::allocator > >::const_iterator {aka std::_Rb_tree_const_iterator >}' changed in GCC 7.1 _M_erase_aux(__position); ~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_tree.h: In function 'void HandleOneIntersectionPoint()': /usr/include/c++/7/bits/stl_tree.h:1125:14: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, paircomp, std::allocator > >::const_iterator {aka std::_Rb_tree_const_iterator >}' changed in GCC 7.1 _M_erase_aux(__position); ~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long int; _Val = std::pair > >; _KeyOfValue = std::_Select1st > > >; _Compare = longlongCompare2; _Alloc = std::allocator > > >]': /usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree > >, std::_Select1st > > >, longlongCompare2, std::allocator > > > >::const_iterator {aka std::_Rb_tree_const_iterator > > >}' changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/map:61:0, from ./structs.h:7, from ./leftinfluence.h:4, from leftinfluence.cpp:1: /usr/include/c++/7/bits/stl_map.h: In function 'long long int LI_CommitDiagonalOwner(LI*, Fragment*, Fragment*)': /usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree > >, std::_Select1st > > >, longlongCompare2, std::allocator > > > >::const_iterator {aka std::_Rb_tree_const_iterator > > >}' changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree > >, std::_Select1st > > >, longlongCompare2, std::allocator > > > >::const_iterator {aka std::_Rb_tree_const_iterator > > >}' changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ In file included from /usr/include/c++/7/map:60:0, from ./structs.h:7, from ./leftinfluence.h:4, from leftinfluence.cpp:1: /usr/include/c++/7/bits/stl_tree.h:1125:14: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, paircomp, std::allocator > >::const_iterator {aka std::_Rb_tree_const_iterator >}' changed in GCC 7.1 _M_erase_aux(__position); ~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/7/map:61:0, from ./structs.h:7, from ./leftinfluence.h:4, from leftinfluence.cpp:1: /usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree > >, std::_Select1st > > >, longlongCompare2, std::allocator > > > >::const_iterator {aka std::_Rb_tree_const_iterator > > >}' changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree > >, std::_Select1st > > >, longlongCompare2, std::allocator > > > >::const_iterator {aka std::_Rb_tree_const_iterator > > >}' changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ In file included from score.cpp:1:0: score.cpp: In function 'void createScoreFunctionObjects(char*)': ./structs.h:30:34: warning: suggest parentheses around '+' inside '<<' [-Wparentheses] #define RELPOSSHIFT UPSTRANDBITS + DOWNSTRANDBITS ^ score.cpp:92:106: note: in expansion of macro 'RELPOSSHIFT' cases[i]= charToCase(updir)<>' [-Wparentheses] #define RELPOSSHIFT UPSTRANDBITS + DOWNSTRANDBITS ^ score.cpp:143:19: note: in expansion of macro 'RELPOSSHIFT' if (ret_case >> RELPOSSHIFT != UNRELATED) { ^~~~~~~~~~~ score.cpp: In function 'float fragmentSetScore(Fragment*, Fragment*, LI*, RI*, long long int)': ./structs.h:30:34: warning: suggest parentheses around '+' inside '<<' [-Wparentheses] #define RELPOSSHIFT UPSTRANDBITS + DOWNSTRANDBITS ^ score.cpp:185:120: note: in expansion of macro 'RELPOSSHIFT' tempScore = scoreAll(owner,current, current->strand << DOWNSTRANDSHIFT | owner->strand < > >, std::_Select1st > > >, longlongCompare2, std::allocator > > > >::const_iterator {aka std::_Rb_tree_const_iterator > > >}' changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree > >, std::_Select1st > > >, longlongCompare2, std::allocator > > > >::const_iterator {aka std::_Rb_tree_const_iterator > > >}' changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree > >, std::_Select1st > > >, longlongCompare2, std::allocator > > > >::const_iterator {aka std::_Rb_tree_const_iterator > > >}' changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree > >, std::_Select1st > > >, longlongCompare2, std::allocator > > > >::const_iterator {aka std::_Rb_tree_const_iterator > > >}' changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree > >, std::_Select1st > > >, longlongCompare2, std::allocator > > > >::const_iterator {aka std::_Rb_tree_const_iterator > > >}' changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ g++ glocal.o io.o rightinfluence.o leftinfluence.o score.o -o ../../glocal -lm make[2]: Leaving directory '/builddir/build/BUILD/lagan20/src/glocal' make[1]: Leaving directory '/builddir/build/BUILD/lagan20/src' + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.0nX7V7 + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm '!=' / ']' + rm -rf /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm ++ dirname /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm + cd lagan20 + rm -rf /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm + mkdir -p /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm//usr/bin /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm//usr/lib/lagan/utils + install -m755 chaos /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm/usr/bin + install -m755 mlagan /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm/usr/bin + install -m755 prolagan /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm/usr/bin + install -m755 lagan.pl /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm/usr/bin/lagan + install -m755 slagan.pl /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm/usr/bin/slagan + for f in anal_gloc.pl anchors glocal order rechaos.pl supermap.pl xmfa2mfa.pl + install -m755 anal_gloc.pl /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm//usr/lib/lagan + for f in anal_gloc.pl anchors glocal order rechaos.pl supermap.pl xmfa2mfa.pl + install -m755 anchors /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm//usr/lib/lagan + for f in anal_gloc.pl anchors glocal order rechaos.pl supermap.pl xmfa2mfa.pl + install -m755 glocal /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm//usr/lib/lagan + for f in anal_gloc.pl anchors glocal order rechaos.pl supermap.pl xmfa2mfa.pl + install -m755 order /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm//usr/lib/lagan + for f in anal_gloc.pl anchors glocal order rechaos.pl supermap.pl xmfa2mfa.pl + install -m755 rechaos.pl /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm//usr/lib/lagan + for f in anal_gloc.pl anchors glocal order rechaos.pl supermap.pl xmfa2mfa.pl + install -m755 supermap.pl /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm//usr/lib/lagan + for f in anal_gloc.pl anchors glocal order rechaos.pl supermap.pl xmfa2mfa.pl + install -m755 xmfa2mfa.pl /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm//usr/lib/lagan + for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay + install -m755 utils/bin2bl /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm//usr/lib/lagan/utils + for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay + install -m755 utils/bin2mf /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm//usr/lib/lagan/utils + for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay + install -m755 utils/cextract /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm//usr/lib/lagan/utils + for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay + install -m755 utils/cmerge2.pl /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm//usr/lib/lagan/utils + for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay + install -m755 utils/contigorder /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm//usr/lib/lagan/utils + for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay + install -m755 utils/cstat /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm//usr/lib/lagan/utils + for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay + install -m755 utils/dotplot /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm//usr/lib/lagan/utils + for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay + install -m755 utils/draft.pl /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm//usr/lib/lagan/utils + for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay + install -m755 utils/fa2xfa /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm//usr/lib/lagan/utils + for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay + install -m755 utils/getbounds /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm//usr/lib/lagan/utils + for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay + install -m755 utils/getcontigpos /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm//usr/lib/lagan/utils + for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay + install -m755 utils/getlength /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm//usr/lib/lagan/utils + for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay + install -m755 utils/getoverlap /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm//usr/lib/lagan/utils + for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay + install -m755 utils/Glue /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm//usr/lib/lagan/utils + for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay + install -m755 utils/mextract.pl /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm//usr/lib/lagan/utils + for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay + install -m755 utils/mf2bin.pl /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm//usr/lib/lagan/utils + for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay + install -m755 utils/mpretty.pl /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm//usr/lib/lagan/utils + for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay + install -m755 utils/mproject.pl /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm//usr/lib/lagan/utils + for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay + install -m755 utils/mrunfile.pl /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm//usr/lib/lagan/utils + for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay + install -m755 utils/mrunpairs.pl /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm//usr/lib/lagan/utils + for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay + install -m755 utils/mrun.pl /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm//usr/lib/lagan/utils + for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay + install -m755 utils/mviz.pl /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm//usr/lib/lagan/utils + for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay + install -m755 utils/rc /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm//usr/lib/lagan/utils + for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay + install -m755 utils/scorealign /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm//usr/lib/lagan/utils + for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay + install -m755 utils/scorecontigs /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm//usr/lib/lagan/utils + for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay + install -m755 utils/seqmerge /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm//usr/lib/lagan/utils + for f in bin2bl bin2mf cextract cmerge2.pl contigorder cstat dotplot draft.pl fa2xfa getbounds getcontigpos getlength getoverlap Glue mextract.pl mf2bin.pl mpretty.pl mproject.pl mrunfile.pl mrunpairs.pl mrun.pl mviz.pl rc scorealign scorecontigs seqmerge overlay + install -m755 utils/overlay /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm//usr/lib/lagan/utils + install -m644 blosum62.txt blosum62s.txt nucmatrix.txt test.score /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm//usr/lib/lagan + rm -f Readmes/README.FIRST.chris Readmes/README.chaos.chris Readmes/README.lagan.chris Readmes/README.shuffle.chris + /usr/lib/rpm/find-debuginfo.sh -j4 --strict-build-id -m --build-id-seed 2.0-21.fc27 --unique-debug-suffix -2.0-21.fc27.arm --unique-debug-src-base lagan-2.0-21.fc27.arm --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S /builddir/build/BUILD/lagan20/debugsourcefiles.list /builddir/build/BUILD/lagan20 extracting debug info from /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm/usr/lib/lagan/anchors extracting debug info from /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm/usr/lib/lagan/utils/cstat extracting debug info from /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm/usr/lib/lagan/order extracting debug info from /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm/usr/lib/lagan/utils/overlay extracting debug info from /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm/usr/lib/lagan/utils/getcontigpos extracting debug info from /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm/usr/lib/lagan/utils/getbounds extracting debug info from /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm/usr/lib/lagan/utils/bin2mf extracting debug info from /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm/usr/lib/lagan/utils/getoverlap extracting debug info from /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm/usr/lib/lagan/utils/Glue extracting debug info from /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm/usr/lib/lagan/utils/bin2bl extracting debug info from /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm/usr/lib/lagan/utils/dotplot extracting debug info from /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm/usr/lib/lagan/utils/getlength extracting debug info from /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm/usr/lib/lagan/utils/scorealign extracting debug info from /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm/usr/lib/lagan/utils/seqmerge extracting debug info from /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm/usr/lib/lagan/utils/fa2xfa extracting debug info from /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm/usr/lib/lagan/utils/contigorder extracting debug info from /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm/usr/lib/lagan/utils/cextract extracting debug info from /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm/usr/lib/lagan/utils/scorecontigs extracting debug info from /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm/usr/lib/lagan/utils/rc extracting debug info from /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm/usr/lib/lagan/glocal extracting debug info from /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm/usr/bin/prolagan extracting debug info from /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm/usr/bin/mlagan extracting debug info from /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm/usr/bin/chaos /usr/lib/rpm/sepdebugcrcfix: Updated 23 CRC32s, 0 CRC32s did match. 675 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 + /usr/lib/rpm/brp-python-hardlink Processing files: lagan-2.0-21.fc27.armv7hl Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.2Y62uF + umask 022 + cd /builddir/build/BUILD + cd lagan20 + DOCDIR=/builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm/usr/share/doc/lagan + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm/usr/share/doc/lagan + cp -pr Readmes/LICENSE Readmes/README.FIRST Readmes/README.chaos Readmes/README.lagan Readmes/README.mlagan Readmes/README.shuffle Readmes/README.tools /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm/usr/share/doc/lagan + cp -pr sample.fasta sample.params /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm/usr/share/doc/lagan + exit 0 Provides: lagan = 2.0-21.fc27 lagan(armv7hl-32) = 2.0-21.fc27 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/env /usr/bin/perl ld-linux-armhf.so.3 ld-linux-armhf.so.3(GLIBC_2.4) libc.so.6 libc.so.6(GLIBC_2.4) libc.so.6(GLIBC_2.7) libgcc_s.so.1 libgcc_s.so.1(GCC_3.5) libm.so.6 libm.so.6(GLIBC_2.4) libstdc++.so.6 libstdc++.so.6(CXXABI_1.3) libstdc++.so.6(CXXABI_ARM_1.3.3) libstdc++.so.6(GLIBCXX_3.4) libstdc++.so.6(GLIBCXX_3.4.11) libstdc++.so.6(GLIBCXX_3.4.15) libstdc++.so.6(GLIBCXX_3.4.20) libstdc++.so.6(GLIBCXX_3.4.21) libstdc++.so.6(GLIBCXX_3.4.9) perl(:VERSION) >= 5.5.0 perl(Cwd) perl(File::Basename) perl(File::Copy) perl(File::Path) perl(Getopt::Long) perl(IO::Handle) perl(IPC::Open2) perl(constant) perl(strict) perl(warnings) rtld(GNU_HASH) Processing files: lagan-debugsource-2.0-21.fc27.armv7hl Provides: lagan-debugsource = 2.0-21.fc27 lagan-debugsource(armv7hl-32) = 2.0-21.fc27 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: lagan-debuginfo-2.0-21.fc27.armv7hl Provides: debuginfo(build-id) = 007d4378b4082b728e78d180603518f322b588a4 debuginfo(build-id) = 03af930ceee98b414cf0b4a6a4fe43ec680700c1 debuginfo(build-id) = 2d56c17b4b2ca0c4ed3ee970d80115c83ad55cc1 debuginfo(build-id) = 4a1b825302e7c76f21a1d6c6482f3033bc1dcca4 debuginfo(build-id) = 522c39093b5d4ee3b90aa0eb040ac2003eabbf0e debuginfo(build-id) = 55bd5866c431cb7a451a1cfe84dc1969b7369cf8 debuginfo(build-id) = 59ec66d590698b59146e2a30e7ed31013f6ce9be debuginfo(build-id) = 6098bb110e2fc85bf9f20a6e7fe89d9c11b611d9 debuginfo(build-id) = 6742c866628662872e48d648ca7505a6eca8c0e0 debuginfo(build-id) = 6b866b8ccab97b728f1108e5779a47a348d3ac64 debuginfo(build-id) = 6cf040a5957f697fce17bdf9016f20268a1e8322 debuginfo(build-id) = 75310af77726db21552ffe9e20feb6bfd4562343 debuginfo(build-id) = 834f7a31f4ef01b38483579b8560ba2afcb57452 debuginfo(build-id) = 8c6ad4aa51ed2e35241d102018c149328db92254 debuginfo(build-id) = 9f348e51e06c8e3055b646b5901352f6324acd9d debuginfo(build-id) = bdf49bd86071767bb33e467b27b5867336b1e104 debuginfo(build-id) = c7ae77bfa4dc2b95dd29adfa733f2839f0c8834b debuginfo(build-id) = c83271dd0ed0377f1872bc422d76c7f606b2bba1 debuginfo(build-id) = c97ebc91104ca7e7f6af15a0c75ae6e8e6c023fd debuginfo(build-id) = cd9213fa101053c49cc4e244848131faa80935a2 debuginfo(build-id) = d4d72285461ada06d76b91d2cf341abbf3b8a97e debuginfo(build-id) = ed11f3eb84311c4716d07ca5ab2ad15301f9c1b3 debuginfo(build-id) = fcb5ce4ca99ebf6dffb8f0808d1f3e48c3d5bcee lagan-debuginfo = 2.0-21.fc27 lagan-debuginfo(armv7hl-32) = 2.0-21.fc27 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm Wrote: /builddir/build/RPMS/lagan-2.0-21.fc27.armv7hl.rpm Wrote: /builddir/build/RPMS/lagan-debugsource-2.0-21.fc27.armv7hl.rpm Wrote: /builddir/build/RPMS/lagan-debuginfo-2.0-21.fc27.armv7hl.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.bubnJf + umask 022 + cd /builddir/build/BUILD + cd lagan20 + rm -rf /builddir/build/BUILDROOT/lagan-2.0-21.fc27.arm + exit 0 Child return code was: 0